jwortman's library 68 articles Export

	Chromosomal translocation and segmental duplication in Cryptococcus neoformans. [My Copy] Eukaryot Cell, Vol. 4, No. 2. (February 2005), pp. 401-406. by J. A. Fraser, J. C. Huang, R. Pukkila-Worley, J. A. Alspaugh, T. G. Mitchell, J. Heitman posted to cryptococcus evolution by jwortman on 2005-11-28 17:51:58 as along with 1 person stajich
	Causes and effects of nuclear genome reduction. [My Copy] Curr Opin Genet Dev, Vol. 15, No. 6. (December 2005), pp. 601-608. by P. J. Keeling, C. H. Slamovits posted to evolution genome by jwortman on 2005-11-22 04:08:19 as along with 1 person operon
	Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes. [My Copy] Science, Vol. 309, No. 5731. (1 July 2005), pp. 134-137. by M. J. Gardner, R. Bishop, T. Shah, et al.E. P. de Villiers, J. M. Carlton, N. Hall, Q. Ren, I. T. Paulsen, A. Pain, M. Berriman, R. J. Wilson, S. Sato, S. A. Ralph, D. J. Mann, Z. Xiong, S. J. Shallom, J. Weidman, L. Jiang, J. Lynn, B. Weaver, A. Shoaibi, A. R. Domingo, D. Wasawo, J. Crabtree, J. R. Wortman, B. Haas, S. V. Angiuoli, T. H. Creasy, C. Lu, B. Suh, J. C. Silva, T. R. Utterback, T. V. Feldblyum, M. Pertea, J. Allen, W. C. Nierman, E. L. Taracha, S. L. Salzberg, O. R. White, H. A. Fitzhugh, S. Morzaria, J. C. Venter, C. M. Fraser, V. Nene posted to annotation genome by jwortman on 2005-11-21 02:41:42 as along with 2 people Cortel shung
	Initial sequencing and comparative analysis of the mouse genome. [My Copy] Nature, Vol. 420, No. 6915. (5 December 2002), pp. 520-562. by Mouse Genome Sequencing Consortium, Robert H. Waterston, Kerstin Lindblad-Toh, et al.Ewan Birney, Jane Rogers, Josep F. Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An, Stylianos E. Antonarakis, John Attwood, Robert Baertsch, Jonathon Bailey, Karen Barlow, Stephan Beck, Eric Berry, Bruce Birren, Toby Bloom, Peer Bork, Marc Botcherby, Nicolas Bray, Michael R. Brent, Daniel G. Brown, Stephen D. Brown, Carol Bult, John Burton, Jonathan Butler, Robert D. Campbell, Piero Carninci, Simon Cawley, Francesca Chiaromonte, Asif T. Chinwalla, Deanna M. Church, Michele Clamp, Christopher Clee, Francis S. Collins, Lisa L. Cook, Richard R. Copley, Alan Coulson, Olivier Couronne, James Cuff, Val Curwen, Tim Cutts, Mark Daly, Robert David, Joy Davies, Kimberly D. Delehaunty, Justin Deri, Emmanouil T. Dermitzakis, Colin Dewey, Nicholas J. Dickens, Mark Diekhans, Sheila Dodge, Inna Dubchak, Diane M. Dunn, Sean R. Eddy, Laura Elnitski, Richard D. Emes, Pallavi Eswara, Eduardo Eyras, Adam Felsenfeld, Ginger A. Fewell, Paul Flicek, Karen Foley, Wayne N. Frankel, Lucinda A. Fulton, Robert S. Fulton, Terrence S. Furey, Diane Gage, Richard A. Gibbs, Gustavo Glusman, Sante Gnerre, Nick Goldman, Leo Goodstadt, Darren Grafham, Tina A. Graves, Eric D. Green, Simon Gregory, Roderic Guigó, Mark Guyer, Ross C. Hardison, David Haussler, Yoshihide Hayashizaki, LaDeana W. Hillier, Angela Hinrichs, Wratko Hlavina, Timothy Holzer, Fan Hsu, Axin Hua, Tim Hubbard, Adrienne Hunt, Ian Jackson, David B. Jaffe, L. Steven Johnson, Matthew Jones, Thomas A. Jones, Ann Joy, Michael Kamal, Elinor K. Karlsson, Donna Karolchik, Arkadiusz Kasprzyk, Jun Kawai, Evan Keibler, Cristyn Kells, W. James Kent, Andrew Kirby, Diana L. Kolbe, Ian Korf, Raju S. Kucherlapati, Edward J. Kulbokas, David Kulp, Tom Landers, J. P. Leger, Steven Leonard, Ivica Letunic, Rosie Levine, Jia Li, Ming Li, Christine Lloyd, Susan Lucas, Bin Ma, Donna R. Maglott, Elaine R. Mardis, Lucy Matthews, Evan Mauceli, John H. Mayer, Megan McCarthy, W. Richard McCombie, Stuart McLaren, Kirsten McLay, John D. McPherson, Jim Meldrim, Beverley Meredith, Jill P. Mesirov, Webb Miller, Tracie L. Miner, Emmanuel Mongin, Kate T. Montgomery, Michael Morgan, Richard Mott, James C. Mullikin, Donna M. Muzny, William E. Nash, Joanne O. Nelson, Michael N. Nhan, Robert Nicol, Zemin Ning, Chad Nusbaum, Michael J. O'Connor, Yasushi Okazaki, Karen Oliver, Emma Overton-Larty, Lior Pachter, Genís Parra, Kymberlie H. Pepin, Jane Peterson, Pavel Pevzner, Robert Plumb, Craig S. Pohl, Alex Poliakov, Tracy C. Ponce, Chris P. Ponting, Simon Potter, Michael Quail, Alexandre Reymond, Bruce A. Roe, Krishna M. Roskin, Edward M. Rubin, Alistair G. Rust, Ralph Santos, Victor Sapojnikov, Brian Schultz, Jörg Schultz, Matthias S. Schwartz, Scott Schwartz, Carol Scott, Steven Seaman, Steve Searle, Ted Sharpe, Andrew Sheridan, Ratna Shownkeen, Sarah Sims, Jonathan B. Singer, Guy Slater, Arian Smit, Douglas R. Smith, Brian Spencer, Arne Stabenau, Nicole Stange-Thomann, Charles Sugnet, Mikita Suyama, Glenn Tesler, Johanna Thompson, David Torrents, Evanne Trevaskis, John Tromp, Catherine Ucla, Abel Ureta-Vidal, Jade P. Vinson, Andrew C. Von Niederhausern, Claire M. Wade, Melanie Wall, Ryan J. Weber, Robert B. Weiss, Michael C. Wendl, Anthony P. West, Kris Wetterstrand, Raymond Wheeler, Simon Whelan, Jamey Wierzbowski, David Willey, Sophie Williams, Richard K. Wilson, Eitan Winter, Kim C. Worley, Dudley Wyman, Shan Yang, Shiaw-Pyng P. Yang, Evgeny M. Zdobnov, Michael C. Zody, Eric S. Lander posted to genome by jwortman on 2005-11-21 02:39:32 as along with 24 people and 2 groups rshe seb1 ajbattle jmanning2k timhubbard taroleo fisherp dkulp sdinka Cortel Dax42 aprasad ccots indigoviolet adepace treangen joshuashen djkt stajich olympos hausen yoanjacquemin elfar kevinemamy EisenLab Mycology
	Comparative genomics of microsporidia. [My Copy] Folia Parasitol (Praha), Vol. 52, No. 1-2. (May 2005), pp. 8-14. by P. J. Keeling, N. M. Fast, J. S. Law, B. A. Williams, C. H. Slamovits posted to evolution genome by jwortman on 2005-11-21 02:38:14 as
	Fungal genomics: forensic evidence of sexual activity. [My Copy] Curr Biol, Vol. 15, No. 13. (12 July 2005) by N. A. Gow posted to fungi genome sex by jwortman on 2005-11-21 02:36:50 as
	Comparative Genomics of Trypanosomatid Parasitic Protozoa [My Copy] Science, Vol. 309, No. 5733. (15 July 2005), pp. 404-409. by Najib M. El-Sayed, Peter J. Myler, Gaelle Blandin, et al.Matthew Berriman, Jonathan Crabtree, Gautam Aggarwal, Elisabet Caler, Hubert Renauld, Elizabeth A. Worthey, Christiane Hertz-Fowler, Elodie Ghedin, Christopher Peacock, Daniella C. Bartholomeu, Brian J. Haas, Anh-Nhi Tran, Jennifer R. Wortman, Alsmark, Samuel Angiuoli, Atashi Anupama, Jonathan Badger, Frederic Bringaud, Eithon Cadag, Jane M. Carlton, Gustavo C. Cerqueira, Todd Creasy, Arthur L. Delcher, Appolinaire Djikeng, Martin T. Embley, Christopher Hauser, Alasdair C. Ivens, Sarah K. Kummerfeld, Jose B. Pereira-Leal, Daniel Nilsson, Jeremy Peterson, Steven L. Salzberg, Joshua Shallom, Joana C. Silva, Jaideep Sundaram, Scott Westenberger, Owen White, Sara E. Melville, John E. Donelson, Bjorn Andersson, Kenneth D. Stuart, Neil Hall posted to annotation genome by jwortman on 2005-11-21 02:34:26 as along with 2 people bjorns cmmorel
	The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease [My Copy] Science, Vol. 309, No. 5733. (15 July 2005), pp. 409-415. by Najib M. El-Sayed, Peter J. Myler, Daniella C. Bartholomeu, et al.Daniel Nilsson, Gautam Aggarwal, Anh-Nhi Tran, Elodie Ghedin, Elizabeth A. Worthey, Arthur L. Delcher, Gaelle Blandin, Scott J. Westenberger, Elisabet Caler, Gustavo C. Cerqueira, Carole Branche, Brian Haas, Atashi Anupama, Erik Arner, Lena Aslund, Philip Attipoe, Esteban Bontempi, Frederic Bringaud, Peter Burton, Eithon Cadag, David A. Campbell, Mark Carrington, Jonathan Crabtree, Hamid Darban, Jose F. da Silveira, Pieter de Jong, Kimberly Edwards, Paul T. Englund, Gholam Fazelina, Tamara Feldblyum, Marcela Ferella, Alberto C. Frasch, Keith Gull, David Horn, Lihua Hou, Yiting Huang, Ellen Kindlund, Michele Klingbeil, Sindy Kluge, Hean Koo, Daniela Lacerda, Mariano J. Levin, Hernan Lorenzi, Tin Louie, Carlos R. Machado, Richard Mcculloch, Alan Mckenna, Yumi Mizuno, Jeremy C. Mottram, Siri Nelson, Stephen Ochaya, Kazutoyo Osoegawa, Grace Pai, Marilyn Parsons, Martin Pentony, Ulf Pettersson, Mihai Pop, Jose L. Ramirez, Joel Rinta, Laura Robertson, Steven L. Salzberg, Daniel O. Sanchez, Amber Seyler, Reuben Sharma, Jyoti Shetty, Anjana J. Simpson, Ellen Sisk, Martti T. Tammi, Rick Tarleton, Santuza Teixeira, Susan Van Aken, Christy Vogt, Pauline N. Ward, Bill Wickstead, Jennifer Wortman, Owen White, Claire M. Fraser, Kenneth D. Stuart, Bjorn Andersson posted to annotation genome by jwortman on 2005-11-21 02:33:18 as along with 4 people and 1 group bjorns cmmorel fernan azazello MBLAB
	The genome of the African trypanosome Trypanosoma brucei. [My Copy] Science, Vol. 309, No. 5733. (15 July 2005), pp. 416-422. by M. Berriman, E. Ghedin, C. Hertz-Fowler, et al.G. Blandin, H. Renauld, D. C. Bartholomeu, N. J. Lennard, E. Caler, N. E. Hamlin, B. Haas, U. Böhme, L. Hannick, M. A. Aslett, J. Shallom, L. Marcello, L. Hou, B. Wickstead, U. C. Alsmark, C. Arrowsmith, R. J. Atkin, A. J. Barron, F. Bringaud, K. Brooks, M. Carrington, I. Cherevach, T. J. Chillingworth, C. Churcher, L. N. Clark, C. H. Corton, A. Cronin, R. M. Davies, J. Doggett, A. Djikeng, T. Feldblyum, M. C. Field, A. Fraser, I. Goodhead, Z. Hance, D. Harper, B. R. Harris, H. Hauser, J. Hostetler, A. Ivens, K. Jagels, D. Johnson, J. Johnson, K. Jones, A. X. Kerhornou, H. Koo, N. Larke, S. Landfear, C. Larkin, V. Leech, A. Line, A. Lord, A. Macleod, P. J. Mooney, S. Moule, D. M. Martin, G. W. Morgan, K. Mungall, H. Norbertczak, D. Ormond, G. Pai, C. S. Peacock, J. Peterson, M. A. Quail, E. Rabbinowitsch, M. A. Rajandream, C. Reitter, S. L. Salzberg, M. Sanders, S. Schobel, S. Sharp, M. Simmonds, A. J. Simpson, L. Tallon, C. M. Turner, A. Tait, A. R. Tivey, S. Van Aken, D. Walker, D. Wanless, S. Wang, B. White, O. White, S. Whitehead, J. Woodward, J. Wortman, M. D. Adams, T. M. Embley, K. Gull, E. Ullu, J. D. Barry, A. H. Fairlamb, F. Opperdoes, B. G. Barrell, J. E. Donelson, N. Hall, C. M. Fraser, S. E. Melville, N. M. El-Sayed posted to annotation genome by jwortman on 2005-11-21 02:32:48 as
	A high frequency of overlapping gene expression in compacted eukaryotic genomes. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 31. (2 August 2005), pp. 10936-10941. by B. A. Williams, C. H. Slamovits, N. J. Patron, N. M. Fast, P. J. Keeling posted to expression genome by jwortman on 2005-11-21 02:29:10 as
	Functional genome of the human pathogenic fungus Paracoccidioides brasiliensis. [My Copy] FEMS Immunol Med Microbiol, Vol. 45, No. 3. (1 September 2005), pp. 369-381. by M. S. Felipe, F. A. Torres, A. Q. Maranhão, et al.I. Silva-Pereira, M. J. Poças-Fonseca, E. G. Campos, L. M. Moraes, F. B. Arraes, M. J. Carvalho, R. V. Andrade, A. M. Nicola, M. M. Teixeira, R. S. Jesuíno, M. Pereira, C. M. Soares, M. M. Brígido posted to expression fungi genome by jwortman on 2005-11-21 02:25:58 as
	Assembly of polymorphic genomes: algorithms and application to Ciona savignyi. [My Copy] Genome Res, Vol. 15, No. 8. (August 2005), pp. 1127-1135. by J. P. Vinson, D. B. Jaffe, K. O'Neill, et al.E. K. Karlsson, N. Stange-Thomann, S. Anderson, J. P. Mesirov, N. Satoh, Y. Satou, C. Nusbaum, B. Birren, J. E. Galagan, E. S. Lander posted to algorithm assembly by jwortman on 2005-11-21 02:22:57 as along with 5 people and 1 group dakelley adijr nhp Auger Neeperando Dead 60's
	Entamoeba: still more to be learned from the genome. [My Copy] Trends Parasitol, Vol. 21, No. 10. (October 2005) by B. J. Loftus, N. Hall posted to amoeba by jwortman on 2005-11-21 02:17:49 as
	The Entamoeba histolytica genome: something old, something new, something borrowed and sex too? [My Copy] Trends Parasitol, Vol. 21, No. 10. (October 2005), pp. 451-453. by S. L. Stanley posted to amoeba by jwortman on 2005-11-21 02:17:07 as
	Non-coding RNAs: new players in eukaryotic biology. [My Copy] Gene, Vol. 357, No. 2. (12 September 2005), pp. 83-94. by Fabrício F. Costa posted to annotation expression rna by jwortman on 2005-11-21 02:12:28 as along with 4 people GeeSharpMinor eckart_bindewald tardigrade mtagaya
	Deciphering the Model Pathogenic Fungus Cryptococcus Neoformans [My Copy] Nature Reviews Microbiology, Vol. 3, No. 10. (01 October 2005), pp. 753-764. by Alexander Idnurm, Yong-Sun Bahn, Kirsten Nielsen, Xiaorong Lin, James A. Fraser, Joseph Heitman posted to fungi by jwortman on 2005-11-21 02:03:14 as
	Horizontal gene transfer, genome innovation and evolution [My Copy] Nature Reviews Microbiology, Vol. 3, No. 9. (01 September 2005), pp. 679-687. by Peter J. Gogarten, Jeffrey P. Townsend posted to bacteria evolution by jwortman on 2005-11-21 02:01:56 as along with 7 people and 1 group ramiro2k matzke imouthesmp ryang dbikard kinestetika karfunkel microbiology_nijmegen
	The Transcriptional Landscape of the Mammalian Genome [My Copy] Science, Vol. 309, No. 5740. (2 September 2005), pp. 1559-1563. by The FANTOM Consortium, P. Carninci, T. Kasukawa, et al.S. Katayama, J. Gough, M. C. Frith, N. Maeda, R. Oyama, T. Ravasi, B. Lenhard, C. Wells, R. Kodzius, K. Shimokawa, V. B. Bajic, S. E. Brenner, S. Batalov, A. R. R. Forrest, M. Zavolan, M. J. Davis, L. G. Wilming, V. Aidinis, J. E. Allen, A. Ambesi-Impiombato, R. Apweiler, R. N. Aturaliya, T. L. Bailey, M. Bansal, L. Baxter, K. W. Beisel, T. Bersano, H. Bono, A. M. Chalk, K. P. Chiu, V. Choudhary, A. Christoffels, D. R. Clutterbuck, M. L. Crowe, E. Dalla, B. P. Dalrymple, B. de Bono, G. Della Gatta, D. di Bernardo, T. Down, P. Engstrom, M. Fagiolini, G. Faulkner, C. F. Fletcher, T. Fukushima, M. Furuno, S. Futaki, M. Gariboldi, P. Georgii-Hemming, T. R. Gingeras, T. Gojobori, R. E. Green, S. Gustincich, M. Harbers, Y. Hayashi, T. K. Hensch, N. Hirokawa, D. Hill, L. Huminiecki, M. Iacono, K. Ikeo, A. Iwama, T. Ishikawa, M. Jakt, A. Kanapin, M. Katoh, Y. Kawasawa, J. Kelso, H. Kitamura, H. Kitano, G. Kollias, S. P. T. Krishnan, A. Kruger, S. K. Kummerfeld, I. V. Kurochkin, L. F. Lareau, D. Lazarevic, L. Lipovich, J. Liu, S. Liuni, S. McWilliam, Madan M. Babu, M. Madera, L. Marchionni, H. Matsuda, S. Matsuzawa, H. Miki, F. Mignone, S. Miyake, K. Morris, S. Mottagui-Tabar, N. Mulder, N. Nakano, H. Nakauchi, P. Ng, R. Nilsson, S. Nishiguchi, S. Nishikawa, F. Nori, O. Ohara, Y. Okazaki, V. Orlando, K. C. Pang, W. J. Pavan, G. Pavesi, G. Pesole, N. Petrovsky, S. Piazza, J. Reed, J. F. Reid, B. Z. Ring, M. Ringwald, B. Rost, Y. Ruan, S. L. Salzberg, A. Sandelin, C. Schneider, C. Schonbach, K. Sekiguchi, C. A. M. Semple, S. Seno, L. Sessa, Y. Sheng, Y. Shibata, H. Shimada, K. Shimada, D. Silva, B. Sinclair, S. Sperling, E. Stupka, K. Sugiura, R. Sultana, Y. Takenaka, K. Taki, K. Tammoja, S. L. Tan, S. Tang, M. S. Taylor, J. Tegner, S. A. Teichmann, H. R. Ueda, E. van Nimwegen, R. Verardo, C. L. Wei, K. Yagi, H. Yamanishi, E. Zabarovsky, S. Zhu, A. Zimmer, W. Hide, C. Bult, S. M. Grimmond, R. D. Teasdale, E. T. Liu, V. Brusic, J. Quackenbush, C. Wahlestedt, J. S. Mattick, D. A. Hume, RIKEN Genome Exploration Research Group and Genome Science Group Genome Network Project Core Group, C. Kai, D. Sasaki, Y. Tomaru, S. Fukuda, M. Kanamori-Katayama, M. Suzuki, J. Aoki, T. Arakawa, J. Iida, K. Imamura, M. Itoh, T. Kato, H. Kawaji, N. Kawagashira, T. Kawashima, M. Kojima, S. Kondo, H. Konno, K. Nakano, N. Ninomiya, T. Nishio, M. Okada, C. Plessy, K. Shibata, T. Shiraki, S. Suzuki, M. Tagami, K. Waki, A. Watahiki, Y. Okamura-Oho, H. Suzuki, J. Kawai, Y. Hayashizaki posted to annotation expression human by jwortman on 2005-11-21 02:00:17 as along with 20 people and 1 group rsaito hagechouchin443 daforerog guhjy myrtilus setar miguel Cortel jfr tuck lyongu eckart_bindewald troels_marstrand kaspermunch balicea forbiddenfaith99 mtagaya olympos raylim gjuggler Bioinformatics
	Open reading frames provide a rich pool of potential natural antisense transcripts in fungal genomes. [My Copy] Nucleic Acids Res, Vol. 33, No. 16. (2005), pp. 5034-5044. by S. Steigele, K. Nieselt posted to annotation fungi by jwortman on 2005-11-21 01:57:16 as
	Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution [My Copy] Nature (05 October 2005) by Elodie Ghedin, Naomi A. Sengamalay, Martin Shumway, et al.Jennifer Zaborsky, Tamara Feldblyum, Vik Subbu, David J. Spiro, Jeff Sitz, Hean Koo, Pavel Bolotov, Dmitry Dernovoy, Tatiana Tatusova, Yiming Bao, Kirsten St George, Jill Taylor, David J. Lipman, Claire M. Fraser, Jeffery K. Taubenberger, Steven L. Salzberg posted to evolution genome viruses by jwortman on 2005-11-21 01:52:16 as along with 2 people oceanwind bpb
	The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. [My Copy] Nucleic acids research, Vol. 33, No. 17. (2005), pp. 5691-5702. by Ross Overbeek, Tadhg Begley, Ralph M. Butler, et al.Jomuna V. Choudhuri, Han-Yu Y. Chuang, Matthew Cohoon, Valérie de Crécy-Lagard, Naryttza Diaz, Terry Disz, Robert Edwards, Michael Fonstein, Ed D. Frank, Svetlana Gerdes, Elizabeth M. Glass, Alexander Goesmann, Andrew Hanson, Dirk Iwata-Reuyl, Roy Jensen, Neema Jamshidi, Lutz Krause, Michael Kubal, Niels Larsen, Burkhard Linke, Alice C. McHardy, Folker Meyer, Heiko Neuweger, Gary Olsen, Robert Olson, Andrei Osterman, Vasiliy Portnoy, Gordon D. Pusch, Dmitry A. Rodionov, Christian Rückert, Jason Steiner, Rick Stevens, Ines Thiele, Olga Vassieva, Yuzhen Ye, Olga Zagnitko, Veronika Vonstein posted to annotation genome by jwortman on 2005-11-21 01:50:10 as along with 5 people nyyu coela mbeeby barriot balajis
	Comparative genomics of Dictyostelium discoideum and Entamoeba histolytica. [My Copy] Curr Opin Microbiol, Vol. 8, No. 5. (October 2005), pp. 606-611. by L. Eichinger, A. A. Noegel posted to amoeba annotation evolution by jwortman on 2005-11-21 01:42:04 as along with 1 person zarskyv
	Natural selection on protein-coding genes in the human genome [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1153-1157. by Carlos D. Bustamante, Adi Fledel-Alon, Scott Williamson, et al.Rasmus Nielsen, Melissa Todd Hubisz, Stephen Glanowski, David M. Tanenbaum, Thomas J. White, John J. Sninsky, Ryan D. Hernandez, Daniel Civello, Mark D. Adams, Michele Cargill, Andrew G. Clark posted to evolution human by jwortman on 2005-11-21 01:40:30 as along with 26 people and 5 groups rvosa JAShapiro tomhebbron VGreiff ilyashl athma provero jimithystok gjuggler renewang jo_davies stevanspringer operon aprasad dayjm balajis marcius dpollard hdopazo djkt JBEgwa01 ramensky Garamonfok iris42 dmc shoshin EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group
	Computational evidence for hundreds of non-conserved plant microRNAs. [My Copy] BMC Genomics, Vol. 6 (13 September 2005) by M. Lindow, A. Krogh posted to plant rna by jwortman on 2005-11-21 01:39:12 as along with 5 people and 3 groups natstreet kaspermunch mortenlindow xwbcn cdawson Bioinformatics microRNA GIG
	AVID: an integrative framework for discovering functional relationships among proteins. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (1 June 2005) by T. Jiang, A. E. Keating posted to algorithm annotation pathway by jwortman on 2005-11-21 01:32:10 as
	CLU: a new algorithm for EST clustering. [My Copy] BMC Bioinformatics, Vol. 6 Suppl 2 (15 July 2005) by A. Ptitsyn, W. Hide posted to algorithm by jwortman on 2005-11-21 01:15:13 as along with 1 person wonjongchung
	FIGENIX: intelligent automation of genomic annotation: expertise integration in a new software platform. [My Copy] BMC Bioinformatics, Vol. 6 (5 August 2005) by P. Gouret, V. Vitiello, N. Balandraud, A. Gilles, P. Pontarotti, E. G. Danchin posted to algorithm annotation by jwortman on 2005-11-21 01:11:31 as
	Automation of gene assignments to metabolic pathways using high-throughput expression data. [My Copy] BMC Bioinformatics, Vol. 6 (31 August 2005) by L. Popescu, G. Yona posted to annotation pathway by jwortman on 2005-11-21 01:06:48 as along with 1 person shung
	A method of precise mRNA/DNA homology-based gene structure prediction. [My Copy] BMC Bioinformatics, Vol. 6 (21 October 2005) by A. Churbanov, M. Pauley, D. Quest, H. Ali posted to algorithm annotation by jwortman on 2005-11-21 01:01:36 as along with 1 person GustavoLacerda
	Automated methods of predicting the function of biological sequences using GO and BLAST. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (15 November 2005) by Craig E. Jones, Ute Baumann, Alfred L. Brown posted to annotation by jwortman on 2005-11-21 00:56:12 as along with 1 person sgoetz
	Evaluating eukaryotic secreted protein prediction. [My Copy] BMC Bioinformatics, Vol. 6 (14 October 2005) by E. W. Klee, L. B. Ellis posted to annotation by jwortman on 2005-11-21 00:42:16 as
	hATpin, a Family of MITE-like hAT Mobile Elements Conserved in Diverse Plant Species that Forms Highly Stable Secondary Structures. [My Copy] Plant Mol Biol, Vol. 58, No. 6. (August 2005), pp. 869-886. by S. Moreno-Vázquez, J. Ning, B. C. Meyers posted to plant repeat by jwortman on 2005-11-21 00:39:23 as
	Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery. [My Copy] Drug Discov Today, Vol. 10, No. 21. (1 November 2005), pp. 1475-1482. by Y. Ofran, M. Punta, R. Schneider, B. Rost posted to annotation by jwortman on 2005-11-21 00:26:25 as along with 3 people and 2 groups kuhn marcius cjeans BioinfoCIPF SGU-CIPF
	Large scale prokaryotic gene prediction and comparison to genome annotation. [My Copy] Bioinformatics (25 October 2005) by Pernille Nielsen, Anders Krogh posted to annotation by jwortman on 2005-11-21 00:25:23 as
	Knowledge-based voting algorithm for automated protein functional annotationdagger. [My Copy] Proteins, Vol. 61, No. 4. (26 October 2005), pp. 907-917. by G X X. Yu, E M M. Glass, N T T. Karonis, N Maltsev posted to annotation by jwortman on 2005-11-21 00:23:42 as
	Sequence-based heuristics for faster annotation of non-coding RNA families. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 1. (1 January 2006), pp. 35-39. by Zasha Weinberg, Walter L. Ruzzo posted to annotation rna by jwortman on 2005-11-21 00:21:35 as along with 2 people ppgardne arcticrasta
	A rigorous method for multigenic families' functional annotation: the peptidyl arginine deiminase (PADs) proteins family example. [My Copy] BMC Genomics, Vol. 6, No. 1. (4 November 2005) by Nathalie Balandraud, Philippe Gouret, Etienne G. Danchin, et al.Mathieu Blanc, David Zinn, Jean Roudier, Pierre Pontarotti posted to annotation expression by jwortman on 2005-11-21 00:19:03 as along with 1 person felixroudier
	Pathogenic fungus harbours endosymbiotic bacteria for toxin production [My Copy] Nature, Vol. 437, No. 7060., pp. 884-888. by Laila P. Partida-Martinez, Christian Hertweck posted to fungi by jwortman on 2005-11-05 02:54:42 as along with 5 people and 1 group GustavoLacerda dayjm robert manzanita stajich Mycology
	A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees [My Copy] PLoS Biol, Vol. 3, No. 6. (3 May 2005), e170. by Rasmus Nielsen, Carlos Bustamante, Andrew G. Clark, et al.Stephen Glanowski, Timothy B. Sackton, Melissa J. Hubisz, Adi Fledel-Alon, David M. Tanenbaum, Daniel Civello, Thomas J. White, Sninsky, Mark D. Adams, Michele Cargill posted to evolution human by jwortman on 2005-11-05 02:52:12 as along with 9 people and 3 groups provero gjuggler renewang stevanspringer bpb penka hdopazo djkt iris42 Nie FAB-lab BioinfoCIPF
	Mulan: multiple-sequence local alignment and visualization for studying function and evolution. [My Copy] Genome Res, Vol. 15, No. 1. (January 2005), pp. 184-194. by I. Ovcharenko, G. G. Loots, B. M. Giardine, et al.M. Hou, J. Ma, R. C. Hardison, L. Stubbs, W. Miller posted to annotation evolution by jwortman on 2005-10-11 02:44:21 as along with 3 people and 2 groups eckart_bindewald dchughes Neeperando G4ID Genetics-of-Gambling
	What the Aspergillus genomes have told us. [My Copy] Med Mycol, Vol. 43 Suppl 1 (May 2005) by W. C. Nierman, G. May, H. S. Kim, M. J. Anderson, D. Chen, D. W. Denning posted to annotation fungi genome by jwortman on 2005-10-11 02:36:07 as
	TRADE-OFFS IN DETECTING EVOLUTIONARILY CONSTRAINED SEQUENCE BY COMPARATIVE GENOMICS [My Copy] Annual Review of Genomics and Human Genetics, Vol. 6, No. 1. (2005), pp. 143-164. by Eric A. Stone, Gregory M. Cooper, Arend Sidow posted to evolution phylogenetics by jwortman on 2005-10-11 02:35:19 as along with 4 people sujaikumar diamantis aprasad eckart_bindewald
	The genome sequence of the filamentous fungus Neurospora crassa. [My Copy] Nature, Vol. 422, No. 6934. (24 April 2003), pp. 859-868. by James E. Galagan, Sarah E. Calvo, Katherine A. Borkovich, et al.Eric U. Selker, Nick D. Read, David Jaffe, William FitzHugh, Li-Jun J. Ma, Serge Smirnov, Seth Purcell, Bushra Rehman, Timothy Elkins, Reinhard Engels, Shunguang Wang, Cydney B. Nielsen, Jonathan Butler, Matthew Endrizzi, Dayong Qui, Peter Ianakiev, Deborah Bell-Pedersen, Mary Anne A. Nelson, Margaret Werner-Washburne, Claude P. Selitrennikoff, John A. Kinsey, Edward L. Braun, Alex Zelter, Ulrich Schulte, Gregory O. Kothe, Gregory Jedd, Werner Mewes, Chuck Staben, Edward Marcotte, David Greenberg, Alice Roy, Karen Foley, Jerome Naylor, Nicole Stange-Thomann, Robert Barrett, Sante Gnerre, Michael Kamal, Manolis Kamvysselis, Evan Mauceli, Cord Bielke, Stephen Rudd, Dmitrij Frishman, Svetlana Krystofova, Carolyn Rasmussen, Robert L. Metzenberg, David D. Perkins, Scott Kroken, Carlo Cogoni, Giuseppe Macino, David Catcheside, Weixi Li, Robert J. Pratt, Stephen A. Osmani, Colin P. DeSouza, Louise Glass, Marc J. Orbach, J. Andrew Berglund, Rodger Voelker, Oded Yarden, Michael Plamann, Stephan Seiler, Jay Dunlap, Alan Radford, Rodolfo Aramayo, Donald O. Natvig, Lisa A. Alex, Gertrud Mannhaupt, Daniel J. Ebbole, Michael Freitag, Ian Paulsen, Matthew S. Sachs, Eric S. Lander, Chad Nusbaum, Bruce Birren posted to annotation fungi genome by jwortman on 2005-07-25 17:57:55 as along with 9 people and 1 group yangjustinc bpcusack JeremyZucker wimufi sdinka stajich alexl GustavoLacerda bootsy Mycology
	Regulation of Secondary Metabolism in Filamentous Fungi. [My Copy] Annu Rev Phytopathol (12 April 2004) by Jae-Hyuk H. Yu, Nancy P P. Keller posted to fungi by jwortman on 2005-05-19 22:23:48 as along with 1 person angieju
	Bioinformatics: harvesting information for plant and crop science. [My Copy] Semin Cell Dev Biol, Vol. 15, No. 6. (December 2004), pp. 721-731. by G. J. King posted to no-tag by jwortman on 2005-05-18 21:28:10 as
	Are microbes at the root of a solution to world food production? Rational exploitation of interactions between microbes and plants can help to transform agriculture. [My Copy] EMBO Rep, Vol. 5, No. 10. (October 2004), pp. 922-926. by J. P. Morrissey, J. M. Dow, G. L. Mark, F. O'Gara posted to no-tag by jwortman on 2005-05-18 20:50:20 as
	Fungal biology and agriculture: revisiting the field. [My Copy] Mol Plant Microbe Interact, Vol. 16, No. 10. (October 2003), pp. 859-866. by O. Yarden, D. J. Ebbole, S. Freeman, R. J. Rodriguez, M. B. Dickman posted to fungi genome by jwortman on 2005-05-18 20:47:33 as
	Evolutionary analyses of the human genome [My Copy] Nature, Vol. 409, No. 6822. (15 February 2001), pp. 847-849. by Wen-Hsiung Li, Zhenglong Gu, Haidong Wang, Anton Nekrutenko posted to clustering evolution by jwortman on 2005-05-12 03:23:29 as along with 1 person gurkanbebek
	Phylogenomic inference of protein molecular function: advances and challenges. [My Copy] Bioinformatics, Vol. 20, No. 2. (22 January 2004), pp. 170-179. by K. Sjölander posted to annotation phylogenetics by jwortman on 2005-05-11 22:27:25 as along with 4 people operon ziquje sriram_s sgoetz
	The genome sequence of the rice blast fungus Magnaporthe grisea [My Copy] Nature, Vol. 434, No. 7036., pp. 980-986. by Ralph A. Dean, Nicholas J. Talbot, Daniel J. Ebbole, et al.Mark L. Farman, Thomas K. Mitchell, Marc J. Orbach, Michael Thon, Resham Kulkarni, Jin-Rong Xu, Huaqin Pan, Nick D. Read, Yong-Hwan Lee, Ignazio Carbone, Doug Brown, Yeon Y. Oh, Nicole Donofrio, Jun S. Jeong, Darren M. Soanes, Slavica Djonovic, Elena Kolomiets, Cathryn Rehmeyer, Weixi Li, Michael Harding, Soonok Kim, Marc-Henri Lebrun, Heidi Bohnert, Sean Coughlan, Jonathan Butler, Sarah Calvo, Li-Jun Ma, Robert Nicol, Seth Purcell, Chad Nusbaum, James E. Galagan, Bruce W. Birren posted to annotation fungi genome magnaporthe by jwortman on 2005-05-11 20:23:43 as along with 4 people and 1 group GustavoLacerda alephXV stajich alexl Mycology

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annotation	35
genome	21
evolution	16
fungi	11
algorithm	6
expression	5
drosophila	4
amoeba	4
arabidopsis	4
human	4
rna	3
phylogenetics	3
bacteria	2
cryptococcus	2
plant	2
pathway	2
viruses	2
pasa	1
synteny	1
sex	1
p53	1
anopheles	1
intron	1
clustering	1
magnaporthe	1
assembly	1
repeat	1
mouse	1

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