jwortman's library [68 articles]

Eukaryot Cell, Vol. 4, No. 2. (February 2005), pp. 401-406.

by JA Fraser, JC Huang, R Pukkila-Worley, JA Alspaugh, TG Mitchell, J Heitman

posted to cryptococcus evolution by jwortman on 2005-11-28 17:51:58 as along with 1 person stajich

Curr Opin Genet Dev, Vol. 15, No. 6. (December 2005), pp. 601-608.

by PJ Keeling, CH Slamovits

posted to evolution genome by jwortman on 2005-11-22 04:08:19 as along with 1 person operon

Science, Vol. 309, No. 5731. (1 July 2005), pp. 134-137.

by MJ Gardner, R Bishop, T Shah, EP de Villiers, JM Carlton, N Hall, Q Ren, IT Paulsen, A Pain, M Berriman, RJ Wilson, S Sato, SA Ralph, DJ Mann, Z Xiong, SJ Shallom, J Weidman, L Jiang, J Lynn, B Weaver, A Shoaibi, AR Domingo, D Wasawo, J Crabtree, JR Wortman, B Haas, SV Angiuoli, TH Creasy, C Lu, B Suh, JC Silva, TR Utterback, TV Feldblyum, M Pertea, J Allen, WC Nierman, EL Taracha, SL Salzberg, OR White, HA Fitzhugh, S Morzaria, JC Venter, CM Fraser, V Nene

posted to annotation genome by jwortman on 2005-11-21 02:41:42 as along with 2 people Cortel shung

Nature, Vol. 420, No. 6915. (5 December 2002), pp. 520-562.

by RH Waterston, K Lindblad-Toh, E Birney, J Rogers, JF Abril, P Agarwal, R Agarwala, R Ainscough, M Alexandersson, P An, SE Antonarakis, J Attwood, R Baertsch, J Bailey, K Barlow, S Beck, E Berry, B Birren, T Bloom, P Bork, M Botcherby, N Bray, MR Brent, DG Brown, SD Brown, C Bult, J Burton, J Butler, RD Campbell, P Carninci, S Cawley, F Chiaromonte, AT Chinwalla, DM Church, M Clamp, C Clee, FS Collins, LL Cook, RR Copley, A Coulson, O Couronne, J Cuff, V Curwen, T Cutts, M Daly, R David, J Davies, KD Delehaunty, J Deri, ET Dermitzakis, C Dewey, NJ Dickens, M Diekhans, S Dodge, I Dubchak, DM Dunn, SR Eddy, L Elnitski, RD Emes, P Eswara, E Eyras, A Felsenfeld, GA Fewell, P Flicek, K Foley, WN Frankel, LA Fulton, RS Fulton, TS Furey, D Gage, RA Gibbs, G Glusman, S Gnerre, N Goldman, L Goodstadt, D Grafham, TA Graves, ED Green, S Gregory, R Guigó, M Guyer, RC Hardison, D Haussler, Y Hayashizaki, LW Hillier, A Hinrichs, W Hlavina, T Holzer, F Hsu, A Hua, T Hubbard, A Hunt, I Jackson, DB Jaffe, LS Johnson, M Jones, TA Jones, A Joy, M Kamal, EK Karlsson, D Karolchik, A Kasprzyk, J Kawai, E Keibler, C Kells, WJ Kent, A Kirby, DL Kolbe, I Korf, RS Kucherlapati, EJ Kulbokas, D Kulp, T Landers, JP Leger, S Leonard, I Letunic, R Levine, J Li, M Li, C Lloyd, S Lucas, B Ma, DR Maglott, ER Mardis, L Matthews, E Mauceli, JH Mayer, M McCarthy, WR McCombie, S McLaren, K McLay, JD McPherson, J Meldrim, B Meredith, JP Mesirov, W Miller, TL Miner, E Mongin, KT Montgomery, M Morgan, R Mott, JC Mullikin, DM Muzny, WE Nash, JO Nelson, MN Nhan, R Nicol, Z Ning, C Nusbaum, MJ O'Connor, Y Okazaki, K Oliver, E Overton-Larty, L Pachter, G Parra, KH Pepin, J Peterson, P Pevzner, R Plumb, CS Pohl, A Poliakov, TC Ponce, CP Ponting, S Potter, M Quail, A Reymond, BA Roe, KM Roskin, EM Rubin, AG Rust, R Santos, V Sapojnikov, B Schultz, J Schultz, MS Schwartz, S Schwartz, C Scott, S Seaman, S Searle, T Sharpe, A Sheridan, R Shownkeen, S Sims, JB Singer, G Slater, A Smit, DR Smith, B Spencer, A Stabenau, N Stange-Thomann, C Sugnet, M Suyama, G Tesler, J Thompson, D Torrents, E Trevaskis, J Tromp, C Ucla, A Ureta-Vidal, JP Vinson, AC Von Niederhausern, CM Wade, M Wall, RJ Weber, RB Weiss, MC Wendl, AP West, K Wetterstrand, R Wheeler, S Whelan, J Wierzbowski, D Willey, S Williams, RK Wilson, E Winter, KC Worley, D Wyman, S Yang, SP Yang, EM Zdobnov, MC Zody, ES Lander,

posted to genome by jwortman on 2005-11-21 02:39:32 as along with 17 people and 2 groups OriginalLurch dkulp sdinka Cortel Dax42 aprasad ccots indigoviolet adepace treangen joshuashen djkt stajich olympos hausen yoanjacquemin elfar EisenLab Berkeley Mycology

Folia Parasitol (Praha), Vol. 52, No. 1-2. (May 2005), pp. 8-14.

by PJ Keeling, NM Fast, JS Law, BA Williams, CH Slamovits

posted to evolution genome by jwortman on 2005-11-21 02:38:14 as

Curr Biol, Vol. 15, No. 13. (12 July 2005)

by NA Gow

posted to fungi genome sex by jwortman on 2005-11-21 02:36:50 as

Science, Vol. 309, No. 5733. (15 July 2005), pp. 404-409.

by Najib M El-Sayed, Peter J Myler, Gaelle Blandin, Matthew Berriman, Jonathan Crabtree, Gautam Aggarwal, Elisabet Caler, Hubert Renauld, Elizabeth A Worthey, Christiane Hertz-Fowler, Elodie Ghedin, Christopher Peacock, Daniella C Bartholomeu, Brian J Haas, Anh-Nhi Tran, Jennifer R Wortman, Alsmark, Samuel Angiuoli, Atashi Anupama, Jonathan Badger, Frederic Bringaud, Eithon Cadag, Jane M Carlton, Gustavo C Cerqueira, Todd Creasy, Arthur L Delcher, Appolinaire Djikeng, Martin T Embley, Christopher Hauser, Alasdair C Ivens, Sarah K Kummerfeld, Jose B Pereira-Leal, Daniel Nilsson, Jeremy Peterson, Steven L Salzberg, Joshua Shallom, Joana C Silva, Jaideep Sundaram, Scott Westenberger, Owen White, Sara E Melville, John E Donelson, Bjorn Andersson, Kenneth D Stuart, Neil Hall

posted to annotation genome by jwortman on 2005-11-21 02:34:26 as along with 2 people bjorns cmmorel

Science, Vol. 309, No. 5733. (15 July 2005), pp. 409-415.

by Najib M El-Sayed, Peter J Myler, Daniella C Bartholomeu, Daniel Nilsson, Gautam Aggarwal, Anh-Nhi Tran, Elodie Ghedin, Elizabeth A Worthey, Arthur L Delcher, Gaelle Blandin, Scott J Westenberger, Elisabet Caler, Gustavo C Cerqueira, Carole Branche, Brian Haas, Atashi Anupama, Erik Arner, Lena Aslund, Philip Attipoe, Esteban Bontempi, Frederic Bringaud, Peter Burton, Eithon Cadag, David A Campbell, Mark Carrington, Jonathan Crabtree, Hamid Darban, Jose F da Silveira, Pieter de Jong, Kimberly Edwards, Paul T Englund, Gholam Fazelina, Tamara Feldblyum, Marcela Ferella, Alberto C Frasch, Keith Gull, David Horn, Lihua Hou, Yiting Huang, Ellen Kindlund, Michele Klingbeil, Sindy Kluge, Hean Koo, Daniela Lacerda, Mariano J Levin, Hernan Lorenzi, Tin Louie, Carlos R Machado, Richard Mcculloch, Alan Mckenna, Yumi Mizuno, Jeremy C Mottram, Siri Nelson, Stephen Ochaya, Kazutoyo Osoegawa, Grace Pai, Marilyn Parsons, Martin Pentony, Ulf Pettersson, Mihai Pop, Jose L Ramirez, Joel Rinta, Laura Robertson, Steven L Salzberg, Daniel O Sanchez, Amber Seyler, Reuben Sharma, Jyoti Shetty, Anjana J Simpson, Ellen Sisk, Martti T Tammi, Rick Tarleton, Santuza Teixeira, Susan Van Aken, Christy Vogt, Pauline N Ward, Bill Wickstead, Jennifer Wortman, Owen White, Claire M Fraser, Kenneth D Stuart, Bjorn Andersson

posted to annotation genome by jwortman on 2005-11-21 02:33:18 as along with 4 people and 1 group bjorns cmmorel fernan azazello MBLAB

Science, Vol. 309, No. 5733. (15 July 2005), pp. 416-422.

by M Berriman, E Ghedin, C Hertz-Fowler, G Blandin, H Renauld, DC Bartholomeu, NJ Lennard, E Caler, NE Hamlin, B Haas, U Böhme, L Hannick, MA Aslett, J Shallom, L Marcello, L Hou, B Wickstead, UC Alsmark, C Arrowsmith, RJ Atkin, AJ Barron, F Bringaud, K Brooks, M Carrington, I Cherevach, TJ Chillingworth, C Churcher, LN Clark, CH Corton, A Cronin, RM Davies, J Doggett, A Djikeng, T Feldblyum, MC Field, A Fraser, I Goodhead, Z Hance, D Harper, BR Harris, H Hauser, J Hostetler, A Ivens, K Jagels, D Johnson, J Johnson, K Jones, AX Kerhornou, H Koo, N Larke, S Landfear, C Larkin, V Leech, A Line, A Lord, A Macleod, PJ Mooney, S Moule, DM Martin, GW Morgan, K Mungall, H Norbertczak, D Ormond, G Pai, CS Peacock, J Peterson, MA Quail, E Rabbinowitsch, MA Rajandream, C Reitter, SL Salzberg, M Sanders, S Schobel, S Sharp, M Simmonds, AJ Simpson, L Tallon, CM Turner, A Tait, AR Tivey, S Van Aken, D Walker, D Wanless, S Wang, B White, O White, S Whitehead, J Woodward, J Wortman, MD Adams, TM Embley, K Gull, E Ullu, JD Barry, AH Fairlamb, F Opperdoes, BG Barrell, JE Donelson, N Hall, CM Fraser, SE Melville, NM El-Sayed

posted to annotation genome by jwortman on 2005-11-21 02:32:48 as

Proc Natl Acad Sci U S A, Vol. 102, No. 31. (2 August 2005), pp. 10936-10941.

by BA Williams, CH Slamovits, NJ Patron, NM Fast, PJ Keeling

posted to expression genome by jwortman on 2005-11-21 02:29:10 as

FEMS Immunol Med Microbiol, Vol. 45, No. 3. (1 September 2005), pp. 369-381.

by MS Felipe, FA Torres, AQ Maranhão, I Silva-Pereira, MJ Poças-Fonseca, EG Campos, LM Moraes, FB Arraes, MJ Carvalho, RV Andrade, AM Nicola, MM Teixeira, RS Jesuíno, M Pereira, CM Soares, MM Brígido

posted to expression fungi genome by jwortman on 2005-11-21 02:25:58 as

Genome Res, Vol. 15, No. 8. (August 2005), pp. 1127-1135.

by JP Vinson, DB Jaffe, K O'Neill, EK Karlsson, N Stange-Thomann, S Anderson, JP Mesirov, N Satoh, Y Satou, C Nusbaum, B Birren, JE Galagan, ES Lander

posted to algorithm assembly by jwortman on 2005-11-21 02:22:57 as along with 3 people and 1 group Neeperando Auger nhp Dead 60's

Trends Parasitol, Vol. 21, No. 10. (October 2005)

by BJ Loftus, N Hall

posted to amoeba by jwortman on 2005-11-21 02:17:49 as

Trends Parasitol, Vol. 21, No. 10. (October 2005), pp. 451-453.

by SL Stanley

posted to amoeba by jwortman on 2005-11-21 02:17:07 as

Gene, Vol. 357, No. 2. (12 September 2005), pp. 83-94.

by FF Costa

posted to annotation expression rna by jwortman on 2005-11-21 02:12:28 as along with 3 people eckart_bindewald tardigrade mtagaya

Nature Reviews Microbiology, Vol. 3, No. 10. (01 October 2005), pp. 753-764.

by Alexander Idnurm, Yong-Sun Bahn, Kirsten Nielsen, Xiaorong Lin, James A Fraser, Joseph Heitman

posted to fungi by jwortman on 2005-11-21 02:03:14 as

Nature Reviews Microbiology, Vol. 3, No. 9. (01 September 2005), pp. 679-687.

by Peter J Gogarten, Jeffrey P Townsend

posted to bacteria evolution by jwortman on 2005-11-21 02:01:56 as along with 6 people and 1 group matzke imouthesmp ryang dbikard kinestetika karfunkel microbiology_nijmegen

Science, Vol. 309, No. 5740. (2 September 2005), pp. 1559-1563.

by P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells, R Kodzius, K Shimokawa, VB Bajic, SE Brenner, S Batalov, AR Forrest, M Zavolan, MJ Davis, LG Wilming, V Aidinis, JE Allen, A Ambesi-Impiombato, R Apweiler, RN Aturaliya, TL Bailey, M Bansal, L Baxter, KW Beisel, T Bersano, H Bono, AM Chalk, KP Chiu, V Choudhary, A Christoffels, DR Clutterbuck, ML Crowe, E Dalla, BP Dalrymple, B de Bono, G Della Gatta, D di Bernardo, T Down, P Engstrom, M Fagiolini, G Faulkner, CF Fletcher, T Fukushima, M Furuno, S Futaki, M Gariboldi, P Georgii-Hemming, TR Gingeras, T Gojobori, RE Green, S Gustincich, M Harbers, Y Hayashi, TK Hensch, N Hirokawa, D Hill, L Huminiecki, M Iacono, K Ikeo, A Iwama, T Ishikawa, M Jakt, A Kanapin, M Katoh, Y Kawasawa, J Kelso, H Kitamura, H Kitano, G Kollias, SP Krishnan, A Kruger, SK Kummerfeld, IV Kurochkin, LF Lareau, D Lazarevic, L Lipovich, J Liu, S Liuni, S McWilliam, M Madan Babu, M Madera, L Marchionni, H Matsuda, S Matsuzawa, H Miki, F Mignone, S Miyake, K Morris, S Mottagui-Tabar, N Mulder, N Nakano, H Nakauchi, P Ng, R Nilsson, S Nishiguchi, S Nishikawa, F Nori, O Ohara, Y Okazaki, V Orlando, KC Pang, WJ Pavan, G Pavesi, G Pesole, N Petrovsky, S Piazza, J Reed, JF Reid, BZ Ring, M Ringwald, B Rost, Y Ruan, SL Salzberg, A Sandelin, C Schneider, C Schönbach, K Sekiguchi, CA Semple, S Seno, L Sessa, Y Sheng, Y Shibata, H Shimada, K Shimada, D Silva, B Sinclair, S Sperling, E Stupka, K Sugiura, R Sultana, Y Takenaka, K Taki, K Tammoja, SL Tan, S Tang, MS Taylor, J Tegner, SA Teichmann, HR Ueda, E van Nimwegen, R Verardo, CL Wei, K Yagi, H Yamanishi, E Zabarovsky, S Zhu, A Zimmer, W Hide, C Bult, SM Grimmond, RD Teasdale, ET Liu, V Brusic, J Quackenbush, C Wahlestedt, JS Mattick, DA Hume, C Kai, D Sasaki, Y Tomaru, S Fukuda, M Kanamori-Katayama, M Suzuki, J Aoki, T Arakawa, J Iida, K Imamura, M Itoh, T Kato, H Kawaji, N Kawagashira, T Kawashima, M Kojima, S Kondo, H Konno, K Nakano, N Ninomiya, T Nishio, M Okada, C Plessy, K Shibata, T Shiraki, S Suzuki, M Tagami, K Waki, A Watahiki, Y Okamura-Oho, H Suzuki, J Kawai, Y Hayashizaki, ,

posted to annotation expression human by jwortman on 2005-11-21 02:00:17 as along with 16 people and 1 group setar miguel Cortel jfr tuck lyongu eckart_bindewald troels_marstrand kaspermunch balicea forbiddenfaith99 mbj mtagaya olympos raylim gjuggler Bioinformatics

Nucleic Acids Res, Vol. 33, No. 16. (2005), pp. 5034-5044.

by S Steigele, K Nieselt

posted to annotation fungi by jwortman on 2005-11-21 01:57:16 as

Nature (05 October 2005)

by Elodie Ghedin, Naomi A Sengamalay, Martin Shumway, Jennifer Zaborsky, Tamara Feldblyum, Vik Subbu, David J Spiro, Jeff Sitz, Hean Koo, Pavel Bolotov, Dmitry Dernovoy, Tatiana Tatusova, Yiming Bao, Kirsten St George, Jill Taylor, David J Lipman, Claire M Fraser, Jeffery K Taubenberger, Steven L Salzberg

posted to evolution genome viruses by jwortman on 2005-11-21 01:52:16 as along with 1 person bpb

Nucleic Acids Res, Vol. 33, No. 17. (2005), pp. 5691-5702.

by R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, V de Crécy-Lagard, N Diaz, T Disz, R Edwards, M Fonstein, ED Frank, S Gerdes, EM Glass, A Goesmann, A Hanson, D Iwata-Reuyl, R Jensen, N Jamshidi, L Krause, M Kubal, N Larsen, B Linke, AC McHardy, F Meyer, H Neuweger, G Olsen, R Olson, A Osterman, V Portnoy, GD Pusch, DA Rodionov, C Rückert, J Steiner, R Stevens, I Thiele, O Vassieva, Y Ye, O Zagnitko, V Vonstein

posted to annotation genome by jwortman on 2005-11-21 01:50:10 as along with 1 person balajis

Curr Opin Microbiol, Vol. 8, No. 5. (October 2005), pp. 606-611.

by L Eichinger, AA Noegel

posted to amoeba annotation evolution by jwortman on 2005-11-21 01:42:04 as

Nature, Vol. 437, No. 7062., pp. 1153-1157.

by Carlos D Bustamante, Adi Fledel-Alon, Scott Williamson, Rasmus Nielsen, Melissa T Hubisz, Stephen Glanowski, David M Tanenbaum, Thomas J White, John J Sninsky, Ryan D Hernandez, Daniel Civello, Mark D Adams, Michele Cargill, Andrew G Clark

posted to evolution human by jwortman on 2005-11-21 01:40:30 as along with 15 people and 5 groups shoshin stevanspringer operon aprasad dayjm balajis marcius dpollard hdopazo djkt JBEgwa01 ramensky Garamonfok iris42 dmc EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group

BMC Genomics, Vol. 6 (13 September 2005)

by M Lindow, A Krogh

posted to plant rna by jwortman on 2005-11-21 01:39:12 as along with 4 people and 3 groups kaspermunch mortenlindow xwbcn cdawson Bioinformatics microRNA GIG

BMC Bioinformatics, Vol. 6, No. 1. (1 June 2005)

by T Jiang, AE Keating

posted to algorithm annotation pathway by jwortman on 2005-11-21 01:32:10 as

BMC Bioinformatics, Vol. 6 Suppl 2 (15 July 2005)

by A Ptitsyn, W Hide

posted to algorithm by jwortman on 2005-11-21 01:15:13 as along with 1 person wonjongchung

BMC Bioinformatics, Vol. 6 (5 August 2005)

by P Gouret, V Vitiello, N Balandraud, A Gilles, P Pontarotti, EG Danchin

posted to algorithm annotation by jwortman on 2005-11-21 01:11:31 as

BMC Bioinformatics, Vol. 6 (31 August 2005)

by L Popescu, G Yona

posted to annotation pathway by jwortman on 2005-11-21 01:06:48 as

BMC Bioinformatics, Vol. 6 (21 October 2005)

by A Churbanov, M Pauley, D Quest, H Ali

posted to algorithm annotation by jwortman on 2005-11-21 01:01:36 as along with 1 person GustavoLacerda

BMC Bioinformatics, Vol. 6, No. 1. (15 November 2005)

by Craig E Jones, Ute Baumann, Alfred L Brown

posted to annotation by jwortman on 2005-11-21 00:56:12 as along with 1 person sgoetz

BMC Bioinformatics, Vol. 6 (14 October 2005)

by EW Klee, LB Ellis

posted to annotation by jwortman on 2005-11-21 00:42:16 as

Plant Mol Biol, Vol. 58, No. 6. (August 2005), pp. 869-886.

by S Moreno-Vázquez, J Ning, BC Meyers

posted to plant repeat by jwortman on 2005-11-21 00:39:23 as

Drug Discov Today, Vol. 10, No. 21. (1 November 2005), pp. 1475-1482.

by Y Ofran, M Punta, R Schneider, B Rost

posted to annotation by jwortman on 2005-11-21 00:26:25 as along with 3 people and 2 groups kuhn marcius cjeans BioinfoCIPF SGU-CIPF

Bioinformatics (25 October 2005)

by Pernille Nielsen, Anders Krogh

posted to annotation by jwortman on 2005-11-21 00:25:23 as

Proteins, Vol. 61, No. 4. (26 October 2005), pp. 907-917.

by G X X Yu, E M M Glass, N T T Karonis, N Maltsev

posted to annotation by jwortman on 2005-11-21 00:23:42 as

Bioinformatics (2 November 2005)

by Zasha Weinberg, Walter L L Ruzzo

posted to annotation rna by jwortman on 2005-11-21 00:21:35 as along with 1 person arcticrasta

BMC Genomics, Vol. 6, No. 1. (4 November 2005)

by Nathalie Balandraud, Philippe Gouret, Etienne G Danchin, Mathieu Blanc, David Zinn, Jean Roudier, Pierre Pontarotti

posted to annotation expression by jwortman on 2005-11-21 00:19:03 as along with 1 person felixroudier

Nature, Vol. 437, No. 7060., pp. 884-888.

by Laila P Partida-Martinez, Christian Hertweck

posted to fungi by jwortman on 2005-11-05 02:54:42 as along with 4 people and 1 group dayjm robert manzanita stajich Berkeley Mycology

PLoS Biol, Vol. 3, No. 6. (June 2005)

by R Nielsen, C Bustamante, AG Clark, S Glanowski, TB Sackton, MJ Hubisz, A Fledel-Alon, DM Tanenbaum, D Civello, TJ White, J J Sninsky, MD Adams, M Cargill

posted to evolution human by jwortman on 2005-11-05 02:52:12 as along with 6 people and 3 groups stevanspringer bpb penka hdopazo djkt iris42 Nie FAB-lab BioinfoCIPF

Genome Res, Vol. 15, No. 1. (January 2005), pp. 184-194.

by I Ovcharenko, GG Loots, BM Giardine, M Hou, J Ma, RC Hardison, L Stubbs, W Miller

posted to annotation evolution by jwortman on 2005-10-11 02:44:21 as along with 3 people and 2 groups Neeperando eckart_bindewald dchughes G4ID Genetics-of-Gambling

Med Mycol, Vol. 43 Suppl 1 (May 2005)

by WC Nierman, G May, HS Kim, MJ Anderson, D Chen, DW Denning

posted to annotation fungi genome by jwortman on 2005-10-11 02:36:07 as

Annu Rev Genomics Hum Genet, Vol. 6 (2005), pp. 143-164.

by EA Stone, GM Cooper, A Sidow

posted to evolution phylogenetics by jwortman on 2005-10-11 02:35:19 as along with 2 people aprasad eckart_bindewald

Nature, Vol. 422, No. 6934. (24 April 2003), pp. 859-868.

by JE Galagan, SE Calvo, KA Borkovich, EU Selker, ND Read, D Jaffe, W FitzHugh, LJ Ma, S Smirnov, S Purcell, B Rehman, T Elkins, R