MassNet: a functional annotation service for protein mass spectrometry data.

@article{citeulike:2764433, abstract = {Although mass spectrometry has been frequently used to identify proteins, there are no web servers that provide comprehensive functional annotation of those identified proteins. It is necessary to provide such web service due to a rapid increase in the data. We, therefore, introduce MassNet, which provides (i) physico-chemical analysis information, (ii) KEGG pathway assignment (iii) Gene Ontology mapping and (iv) protein-protein interaction (PPI) prediction for the data from MASCOT, Prospector and Profound. MassNet provides the prediction information for PPIs using both 3D structural interaction and experimental interaction deposited in PSIMAP, BIND, DIP, HPRD, IntAct, MINT, CYGD and BioGrid. The web service is freely available at http://massnet.kr or http://sequenceome.kobic.re.kr/MassNet/.}, address = {Korean BioInformation Center, KRIBB, Daejeon 305-806 and Proteomics Research Team, Korea Basic Science Institute, Daejeon 305-333, Korea.}, author = {Park, Daeui and Kim, Byoung-Chul C. and Cho, Seong-Woong W. and Park, Seong-Jin J. and Choi, Jong-Soon S. and Kim, Seung Il I. and Bhak, Jong and Lee, Sunghoon }, citeulike-article-id = {2764433}, issn = {1362-4962}, journal = {Nucleic acids research}, keywords = {proteomics}, month = {April}, posted-at = {2008-05-07 10:21:53}, priority = {2}, title = {MassNet: a functional annotation service for protein mass spectrometry data.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/18448467}, year = {2008} }

TY - JOUR ID - citeulike:2764433 L3 - citeulike-article-id:2764433 TI - MassNet: a functional annotation service for protein mass spectrometry data. JF - Nucleic acids research AD - Korean BioInformation Center, KRIBB, Daejeon 305-806 and Proteomics Research Team, Korea Basic Science Institute, Daejeon 305-333, Korea. SN - 1362-4962 N2 - Although mass spectrometry has been frequently used to identify proteins, there are no web servers that provide comprehensive functional annotation of those identified proteins. It is necessary to provide such web service due to a rapid increase in the data. We, therefore, introduce MassNet, which provides (i) physico-chemical analysis information, (ii) KEGG pathway assignment (iii) Gene Ontology mapping and (iv) protein-protein interaction (PPI) prediction for the data from MASCOT, Prospector and Profound. MassNet provides the prediction information for PPIs using both 3D structural interaction and experimental interaction deposited in PSIMAP, BIND, DIP, HPRD, IntAct, MINT, CYGD and BioGrid. The web service is freely available at http://massnet.kr or http://sequenceome.kobic.re.kr/MassNet/. KW - proteomics AU - Park, Daeui AU - Kim, Byoung-Chul AU - Cho, Seong-Woong AU - Park, Seong-Jin AU - Choi, Jong-Soon AU - Kim, Seung Il AU - Bhak, Jong AU - Lee, Sunghoon PY - 2008/04/29/ UR - http://view.ncbi.nlm.nih.gov/pubmed/18448467 ER -