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jyuh's rnai [59 articles]

Recent papers added to jyuh's library classified by the tag rnai. You can also see everyone's rnai.
  • Work Flow for Multiplexing siRNA Assays by Solid-Phase Reverse Transfection in Multiwell Plates.
    Journal of biomolecular screening : the official journal of the Society for Biomolecular Screening (3 July 2008)
    by Holger Erfle, Rainer Pepperkok, Jan Ellenberg, Jutta Bulkescher, Beate Neumann, Phill Rogers
    posted to rnai cell-array by jyuh on 2008-08-19 09:35:35 as **
  • RNA interference: an emerging generation of biologicals.
    Biotechnology journal, Vol. 3, No. 3. (March 2008), pp. 339-353.
    by N Shrivastava, A Srivastava
    posted to rnai by jyuh on 2008-08-16 05:48:34 as **
  • RNAi mechanisms and applications.
    BioTechniques, Vol. 44, No. 5. (April 2008), pp. 613-616.
    by D Kim, J Rossi
    posted to rnai by jyuh on 2008-08-16 05:48:22 as **
  • Hit selection with false discovery rate control in genome-scale RNAi screens.
    Nucleic acids research, Vol. 36, No. 14. (August 2008), pp. 4667-4679.
    by XD Zhang, PF Kuan, M Ferrer, X Shu, YC Liu, AT Gates, P Kunapuli, EM Stec, M Xu, SD Marine, DJ Holder, B Strulovici, JF Heyse, AS Espeseth
    posted to rnai hts fdr by jyuh on 2008-08-16 05:05:28 as **
  • Identification of JAK/STAT pathway regulators-Insights from RNAi screens.
    Seminars in cell & developmental biology (8 June 2008)
    by Patrick Müller, Michael Boutros, Martin P P Zeidler
    posted to stat rnai by jyuh on 2008-08-16 04:58:27 as **
  • Lessons from genetics: interpreting complex phenotypes in RNAi screens.
    Current opinion in cell biology, Vol. 20, No. 4. (August 2008), pp. 483-489.
    by R Sacher, L Stergiou, L Pelkmans
    posted to rnai phenotype by jyuh on 2008-08-16 04:39:39 as **
  • Large scale statistical inference of signaling pathways from RNAi and microarray data
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Holger Froehlich, Mark Fellmann, Holger Sueltmann, Annemarie Poustka, Tim Beissbarth
    posted to rnai microarray grn by jyuh on 2008-08-10 09:43:39 as ** along with 3 people czeller heliopais seemu
  • A small molecule enhances RNA interference and promotes microRNA processing
    Nature Biotechnology, Vol. 26, No. 8. (20 July 2008), pp. 933-940.
    by Ge Shan, Yujing Li, Junliang Zhang, Wendi Li, Keith E Szulwach, Ranhui Duan, Mohammad A Faghihi, Ahmad M Khalil, Lianghua Lu, Zain Paroo, Anthony WS Chan, Zhangjie Shi, Qinghua Liu, Claes Wahlestedt, Chuan He, Peng Jin
    posted to rnai enoxacin by jyuh on 2008-08-08 11:20:54 as ** along with 1 person kengg
  • Integrating experimental and analytic approaches to improve data quality in genome-wide RNAi screens.
    Journal of biomolecular screening : the official journal of the Society for Biomolecular Screening, Vol. 13, No. 5. (June 2008), pp. 378-389.
    by XD Zhang, AS Espeseth, EN Johnson, J Chin, A Gates, LJ Mitnaul, SD Marine, J Tian, EM Stec, P Kunapuli, DJ Holder, JF Heyse, B Strulovici, M Ferrer
    posted to rnai hts by jyuh on 2008-07-15 05:36:51 as **
  • A method with flexible and balanced control of false negatives and false positives for hit selection in RNA interference high-throughput screening assays: a statistical terminology.
    Journal of biomolecular screening : the official journal of the Society for Biomolecular Screening, Vol. 13, No. 4. (April 2008), pp. 309-311.
    by E Schechtman
    posted to rnai hts by jyuh on 2008-07-15 05:36:36 as **
  • Median absolute deviation to improve hit selection for genome-scale RNAi screens.
    Journal of biomolecular screening : the official journal of the Society for Biomolecular Screening, Vol. 13, No. 2. (February 2008), pp. 149-158.
    by N Chung, XD Zhang, A Kreamer, L Locco, PF Kuan, S Bartz, PS Linsley, M Ferrer, B Strulovici
    posted to rnai hts by jyuh on 2008-07-15 05:36:14 as **
  • Antisense, RNAi, and gene silencing strategies for therapy: Mission possible or impossible?
    Drug Discovery Today, Vol. 13, No. 11-12. (June 2008), pp. 513-521.
    by Elizabeth R Rayburn, Ruiwen Zhang
    posted to rnai antisense by jyuh on 2008-06-29 06:43:56 as **
  • An image score inference system for RNAi genome-wide screening based on fuzzy mixture regression modeling.
    Journal of biomedical informatics (29 April 2008)
    by Jun Wang, Xiaobo Zhou, Fuhai Li, Pamela L L Bradley, Shih-Fu F Chang, Norbert Perrimon, Stephen T C T Wong
    posted to rnai phenotype imaging by jyuh on 2008-06-25 07:09:43 as **
  • Using iterative cluster merging with improved gap statistics to perform online phenotype discovery in the context of high-throughput RNAi screens
    BMC Bioinformatics, Vol. 9 (05 June 2008), 264.
    by Zheng Yin, Xiaobo Zhou, Chris Bakal, Fuhai Li, Youxian Sun, Norbert Perrimon, Stephen TC Wong
    posted to rnai imaging hts by jyuh on 2008-06-25 07:07:44 as ** along with 1 person jiny
  • Constraint factor graph cutbased active contour method for automated cellular image segmentation in RNAi screening
    Journal of Microscopy, Vol. 230, No. 2. (May 2008), pp. 177-191.
    by C Chen, H Li, X Zhou, STC Wong
    posted to rnai phenotype imaging by jyuh on 2008-06-25 07:07:32 as ** along with 1 person singhsh
  • Mechanisms and strategies for effective delivery of antisense and siRNA oligonucleotides
    Nucl. Acids Res. (16 June 2008), gkn342.
    by Rudy Juliano, Md Alam, Vidula Dixit, Hyumin Kang
    posted to rnai delivery antisense by jyuh on 2008-06-18 08:34:53 as **
  • Sequence- and target-independent angiogenesis suppression by siRNA via TLR3
    Nature (26 March 2008)
    by Mark E Kleinman, Kiyoshi Yamada, Atsunobu Takeda, Vasu Chandrasekaran, Miho Nozaki, Judit Z Baffi, Romulo JC Albuquerque, Satoshi Yamasaki, Masahiro Itaya, Yuzhen Pan, Binoy Appukuttan, Daniel Gibbs, Zhenglin Yang, Katalin Karikó, Balamurali K Ambati, Traci A Wilgus, Luisa A Dipietro, Eiji Sakurai, Kang Zhang, Justine R Smith, Ethan W Taylor, Jayakrishna Ambati
    posted to tlr rnai rct by jyuh on 2008-06-11 07:38:54 as ** along with 1 person nickpitman
  • Cellular siRNA delivery mediated by a cell-permeant RNA-binding protein and photoinduced RNA interference.
    Bioconjugate chemistry, Vol. 19, No. 5. (May 2008), pp. 1017-1024.
    by T Endoh, M Sisido, T Ohtsuki
    posted to rnai delivery by jyuh on 2008-06-06 13:47:51 as **
  • Efficient in vivo delivery of siRNA to the liver by conjugation of alpha-tocopherol.
    Molecular therapy : the journal of the American Society of Gene Therapy, Vol. 16, No. 4. (April 2008), pp. 734-740.
    by K Nishina, T Unno, Y Uno, T Kubodera, T Kanouchi, H Mizusawa, T Yokota
    posted to rnai liver by jyuh on 2008-06-06 13:47:05 as **
  • Efficient construction of an inverted minimal H1 promoter driven siRNA expression cassette: facilitation of promoter and siRNA sequence exchange.
    PLoS ONE, Vol. 2, No. 1. (2007)
    by H Nassanian, AM Sanchez, A Lo, KA Bradley, B Lee
    posted to rnai plasmid by jyuh on 2008-06-06 13:45:22 as **
  • Gene expression silencing with specific small interfering RNA goes beyond specificity a study of key parameters to take into account in the onset of small interfering RNA off-target effects
    FEBS Journal, Vol. 275, No. 11. (June 2008), pp. 2738-2753.
    by Vankoningsloo, Sebastien, De Longueville, Francoise, Evrard, Stephanie, Rahier, Pierre, Houbion, Andree, Fattaccioli, Antoine, Gastellier, Melanie, Remacle, Jose, Raes, Martine, Renard, Patricia, Arnould, Thierry
    posted to rnai by jyuh on 2008-06-04 17:09:06 as ** along with 1 person mtagaya
  • A PCR based method to construct small interference RNA expression vectors.
    Molecular biology reports (12 April 2008)
    by Zhiyong Zhang, Lihui Han, Xiaohong Liang, Lili Cao, Wensheng Sun
    posted to rnai plasmid pcr by jyuh on 2008-06-04 17:05:36 as **
  • OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics.
    Nucleic acids research (19 May 2008)
    by Zhi John J Lu, David H H Mathews
    posted to rnai design by jyuh on 2008-06-04 16:55:43 as **
  • Fundamental differences in the equilibrium considerations for siRNA and antisense oligodeoxynucleotide design.
    Nucleic acids research (15 May 2008)
    by Zhi John J Lu, David H H Mathews
    posted to rnai design antisense by jyuh on 2008-06-04 16:55:12 as **
  • AsiDesigner: exon-based siRNA design server considering alternative splicing.
    Nucleic acids research (14 May 2008)
    by Young-Kyu K Park, Seong-Min M Park, Young-Chul C Choi, Doheon Lee, Misun Won, Young Joo J Kim
    posted to rnai design by jyuh on 2008-06-04 16:54:02 as **
  • The art and design of genetic screens: RNA interference.
    Nature reviews. Genetics (3 June 2008)
    by Michael Boutros, Julie Ahringer
    posted to rnai good design by jyuh on 2008-06-04 16:06:26 as ** along with 2 people janasont dchughes
  • Merging molecular imaging and RNA interference: Early experience in live animals.
    Journal of cellular biochemistry (4 February 2008)
    by Alexei A A Bogdanov
    posted to rnai imaging by jyuh on 2008-06-01 17:36:15 as **
  • Chemical modification: the key to clinical application of RNA interference?
    The Journal of clinical investigation, Vol. 117, No. 12. (December 2007), pp. 3615-3622.
    by DR Corey
    posted to rnai by jyuh on 2008-05-14 07:41:47 as ** along with 1 person faytn
  • The impact of target site accessibility on the design of effective siRNAs
    Nature Biotechnology, Vol. 26, No. 5. (27 April 2008), pp. 578-583.
    by Hakim Tafer, Stefan L Ameres, Gregor Obernosterer, Christoph A Gebeshuber, Renée Schroeder, Javier Martinez, Ivo L Hofacker
    posted to rnai design by jyuh on 2008-05-13 09:19:11 as **
  • Analysis of siRNA specificity on targets with double-nucleotide mismatches.
    Nucleic acids research (17 April 2008)
    by Cecilia Dahlgren, Hong-Yan Y Zhang, Quan Du, Maria Grahn, Gunnar Norstedt, Claes Wahlestedt, Zicai Liang
    posted to rnai by jyuh on 2008-05-13 09:18:29 as ** along with 1 person mtagaya
  • RNA interference-mediated inhibition of hepatocyte nuclear factor 1alpha identifies target genes.
    Biochimica et biophysica acta (19 March 2008)
    by Joanne R R Evans, David L L Kelly, Kirsten J J Morris, Elsa M M Arvide, Ann Harris
    posted to rnai hnf by jyuh on 2008-04-27 03:01:38 as **
  • Estimating Large Scale Signaling Networks through Nested Effect Models with Intervention Effects from Microarray Data.
    Bioinformatics (28 January 2008)
    by Holger Fröhlich, Mark Fellmann, Holger Sültmann, Annemarie Poustka, Tim Beissbarth
    posted to rnai r microarray by jyuh on 2008-03-04 12:18:58 as ** along with 2 people czeller shigepong
  • Systemic Leukocyte-Directed siRNA Delivery Revealing Cyclin D1 as an Anti-Inflammatory Target
    Science, Vol. 319, No. 5863. (1 February 2008), pp. 627-630.
    by Dan Peer, Eun J Park, Yoshiyuki Morishita, Christopher V Carman, Motomu Shimaoka
    posted to rnai inflammation cell-cycle by jyuh on 2008-02-04 09:21:12 as ** along with 1 person shimi002
  • Cellular phenotype recognition for high-content RNA interference genome-wide screening.
    J Biomol Screen, Vol. 13, No. 1. (February 2008), pp. 29-39.
    by J Wang, X Zhou, PL Bradley, SF Chang, N Perrimon, ST Wong
    posted to rnai phenotype hts by jyuh on 2008-01-31 06:12:03 as **
  • An Efficient and Fully Automated High-Throughput Transfection Method for Genome-Scale siRNA Screens.
    J Biomol Screen (23 January 2008)
    by Namjin Chung, Louis Locco, Kevin W W Huff, Steven Bartz, Peter S S Linsley, Marc Ferrer, Berta Strulovici
    posted to transfection rnai hts by jyuh on 2008-01-31 04:48:37 as **
  • From sequence to function: using RNAi to elucidate mechanisms of human disease
    Cell Death and Differentiation, Vol. aop, No. current.
    by NM Wolters, JP Mackeigan
    posted to rnai by jyuh on 2008-01-29 14:26:26 as **
  • Klotho RNAi induces premature senescence of human cells via a p53/p21 dependent pathway
    FEBS Letters, Vol. 580, No. 24. (16 October 2006), pp. 5753-5758.
    by Rita M de Oliveira
    posted to rnai p53 p21 klotho cell-cycle aging by jyuh on 2008-01-28 04:07:06 as **
  • www.rnaworkbench.com: A new program for analyzing RNA interference.
    Comput Methods Programs Biomed (18 January 2008)
    by Radka Svobodová S Vařeková, Ivan Bradáč, Martin Plchút, Michal Skrdla, Michael Wacenovsky, Helmuth Mahr, Georg Mayer, Herbert Tanner, Hermann Brugger, Josef Withalm, Peter Lederer, Heinrich Huber, Gerhard Gierlinger, Ronald Graf, Hakim Tafer, Ivo Hofacker, Peter Schuster, Martin Polčík
    posted to rnai by jyuh on 2008-01-22 12:49:01 as **
  • Use of microarrays in transfection of mammalian cells with dicer-digested small interfering RNAs.
    Anal Biochem (31 December 2007)
    by Hiroyuki Fujimoto, Koichi Kato, Hiroo Iwata
    posted to rnai cell-array by jyuh on 2008-01-22 12:27:13 as **
  • Nonviral delivery of synthetic siRNAs in vivo.
    J Clin Invest, Vol. 117, No. 12. (December 2007), pp. 3623-3632.
    by S Akhtar, IF Benter
    posted to rnai by jyuh on 2008-01-18 02:15:04 as ** along with 1 person faytn
  • Therapeutic application of RNAi: is mRNA targeting finally ready for prime time?
    J. Clin. Invest., Vol. 117, No. 12. (3 December 2007), pp. 3633-3641.
    by Dirk Grimm, Mark A Kay
    posted to rnai by jyuh on 2008-01-15 14:51:07 as ** along with 2 people faytn yavanna
  • RNA interference against viruses: strike and counterstrike
    Nature Biotechnology, Vol. 25, No. 12. (07 December 2007), pp. 1435-1443.
    by Joost Haasnoot, Ellen M Westerhout, Ben Berkhout
    posted to rnai infection by jyuh on 2008-01-15 14:49:14 as **
  • Inhibition of Integrin-Linked Kinase via a siRNA Expression Plasmid Attenuates Connective Tissue Growth Factor-Induced Human Proximal Tubular Epithelial Cells to Mesenchymal Transition.
    Am J Nephrol, Vol. 28, No. 1. (2008), pp. 143-151.
    by Bi-Cheng C Liu, Min-Xia X Li, Jian-Dong D Zhang, Xiao-Cong C Liu, Xiao-Liang L Zhang, Aled O O Phillips
    posted to tin rnai ilk emt ctgf by jyuh on 2007-11-20 02:10:31 as **
  • Interfering with disease: a progress report on siRNA-based therapeutics
    Nature Reviews Drug Discovery, Vol. 6, No. 6., pp. 443-453.
    by Antonin de Fougerolles, Hans-Peter Vornlocher, John Maraganore, Judy Lieberman
    posted to rnai by jyuh on 2007-10-01 16:43:11 as ** along with 2 people alwinpremanand varba
  • Enhancing and confirming the specificity of RNAi experiments
    Nature Methods, Vol. 3, No. 9. (23 August 2006), pp. 677-681.
    by Bryan R Cullen
    posted to rnai by jyuh on 2007-09-20 10:12:16 as ** along with 7 people and 3 groups ecattell tardigrade dchughes Hosna Fritz Verena isera G4ID neurolit Genetics-of-Gambling
  • Delivery of RNA interference.
    Cell Cycle, Vol. 5, No. 18. (September 2006), pp. 2103-2109.
    by CX Li, A Parker, E Menocal, S Xiang, L Borodyansky, JH Fruehauf
    posted to rnai by jyuh on 2007-09-20 04:23:12 as **
  • The best control for the specificity of RNAi.
    Trends Biotechnol, Vol. 23, No. 9. (September 2005), pp. 446-448.
    by M Sarov, AF Stewart
    posted to rnai by jyuh on 2007-09-20 04:22:26 as **
  • Artificial control of gene expression in mammalian cells by modulating RNA interference through aptamer-small molecule interaction.
    RNA, Vol. 12, No. 5. (May 2006), pp. 710-716.
    by CI An, VB Trinh, Y Yokobayashi
    posted to rnai by jyuh on 2007-09-20 04:22:17 as ** along with 1 person mtagaya
  • A protein alternative to RNAi.
    Nat Methods, Vol. 3, No. 11. (November 2006)
    by D Evanko
    posted to rnai by jyuh on 2007-09-20 03:49:45 as **
  • RNA interference rescue by bacterial artificial chromosome transgenesis in mammalian tissue culture cells
    PNAS, Vol. 102, No. 7. (15 February 2005), pp. 2396-2401.
    by Ralf Kittler, Laurence Pelletier, Chunling Ma, Ina Poser, Steffi Fischer, Anthony A Hyman, Frank Buchholz
    posted to rnai by jyuh on 2007-09-20 03:48:32 as ** along with 1 person lusk
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