kaarsinogen's library 233 articles Export

	Dynamic Measure of Network Robustness [My Copy] Electrical and Electronics Engineers in Israel, 2006 IEEE 24th Convention of (26 February 2007), pp. 366-370. by Y. Singer posted to grn by kaarsinogen on 2009-11-16 18:28:46 as
	Beyond Centrality - Classifying Topological Significance Using Backup Efficiency and Alternative Paths [My Copy] NETWORKING 2007. Ad Hoc and Sensor Networks, Wireless Networks, Next Generation Internet (2009), pp. 774-785. by Yuval Shavitt, Yaron Singer posted to grn by kaarsinogen on 2009-11-16 18:26:32 as
	The role of lineage-specific gene family expansion in the evolution of eukaryotes. [My Copy] Genome research, Vol. 12, No. 7. (July 2002), pp. 1048-1059. by Olivier Lespinet, Yuri I. Wolf, Eugene V. Koonin, L. Aravind posted to grn by kaarsinogen on 2009-11-09 22:47:58 as along with 3 people and 1 group thegoose2 tharris ninch C. elegans / WormBase
	Transcription-associated protein families are primarily taxon-specific. [My Copy] Bioinformatics (Oxford, England), Vol. 17, No. 1. (January 2001), pp. 95-97. by R. M. Coulson, A. J. Enright, C. A. Ouzounis posted to grn by kaarsinogen on 2009-11-09 22:46:06 as
	Molecular evolution in the yeast transcriptional regulation network. [My Copy] Journal of experimental zoology. Part B, Molecular and developmental evolution, Vol. 302, No. 4. (15 July 2004), pp. 392-411. by Annette M. Evangelisti, Andreas Wagner posted to grn by kaarsinogen on 2009-11-09 21:38:29 as
	The "robust yet fragile" nature of the Internet. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 41. (11 October 2005), pp. 14497-14502. by John C. Doyle, David L. Alderson, Lun Li, et al.Steven Low, Matthew Roughan, Stanislav Shalunov, Reiko Tanaka, Walter Willinger posted to grn by kaarsinogen on 2009-11-09 21:35:58 as along with 2 people and 1 group yas thehajime T_lab
	Complete genome sequence of the apicomplexan, Cryptosporidium parvum. [My Copy] Science (New York, N.Y.), Vol. 304, No. 5669. (16 April 2004), pp. 441-445. by Mitchell S. Abrahamsen, Thomas J. Templeton, Shinichiro Enomoto, et al.Juan E. Abrahante, Guan Zhu, Cheryl A. Lancto, Mingqi Deng, Chang Liu, Giovanni Widmer, Saul Tzipori, Gregory A. Buck, Ping Xu, Alan T. Bankier, Paul H. Dear, Bernard A. Konfortov, Helen F. Spriggs, Lakshminarayan Iyer, Vivek Anantharaman, L. Aravind, Vivek Kapur posted to grn by kaarsinogen on 2009-11-09 17:56:46 as along with 3 people robfsouza Cortel shung
	The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium falciparum [My Copy] PLoS Biol, Vol. 1, No. 1. (18 August 2003), e5. by Zbynek Bozdech, Manuel Llinás, Brian L. Pulliam, Edith D. Wong, Jingchun Zhu, Joseph L. DeRisi posted to grn by kaarsinogen on 2009-11-09 17:54:43 as along with 5 people chica shung dyermd Sharpshoot shuzhens
	Data Set Balancing [My Copy] Data Mining and Knowledge Management (2005), pp. 71-80. by David L. Olson posted to machine_learning by kaarsinogen on 2009-09-01 21:35:39 as
	A Multiple Model Cost-Sensitive Approach for Intrusion Detection [My Copy] Machine Learning: ECML 2000: 11th European Conference on Machine Learning, Barcelona, Catalonia, Spain, May/June 2000. Proceedings (2000), pp. 3-14. by Wei Fan, Wenke Lee, Salvatore J. Stolfo, Matthew Miller posted to machine_learning by kaarsinogen on 2009-09-01 20:29:27 as
	Automatic particle selection from electron micrographs using machine learning techniques [My Copy] Journal of Structural Biology, Vol. 167, No. 3. (September 2009), pp. 252-260. by C. O. S. Sorzano, E. Recarte, M. Alcorlo, et al.J. R. Bilbao-Castro, C. San-Martín, R. Marabini, J. M. Carazo posted to machine_learning by kaarsinogen on 2009-09-01 19:49:09 as
	From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i63-68. by Pan Du, Gang Feng, Jared Flatow, et al.Jie Song, Michelle Holko, Warren A. Kibbe, Simon M. Lin posted to do by kaarsinogen on 2009-08-20 19:04:12 as along with 9 people and 1 group bertelsen jfr ruichu guhjy sobolevnrm mikel_egana allysonlister fgibson dullhunk baker-group
	Specificity of protein-DNA recognition revealed by structure-based potentials: symmetric/asymmetric and cognate/non-cognate binding. [My Copy] Journal of molecular biology, Vol. 322, No. 5. (4 October 2002), pp. 907-915. by Samuel Selvaraj, Hidetoshi Kono, Akinori Sarai posted to protein-dna_interaction by kaarsinogen on 2009-08-11 22:05:38 as
	Microscopic evolution of social networks [My Copy] In KDD '08: Proceeding of the 14th ACM SIGKDD international conference on Knowledge discovery and data mining (2008), pp. 462-470. by Jure Leskovec, Lars Backstrom, Ravi Kumar, Andrew Tomkins posted to grn by kaarsinogen on 2009-07-21 19:30:30 as along with 11 people dschafer nazimkeven andreacapocci tnhh aalves senseable-urb dartar studentx elsantosneto saket agulli
	Development and current status of the CHARMM force field for nucleic acids. [My Copy] Biopolymers, Vol. 56, No. 4., pp. 257-265. by A. D. MacKerell, N. Banavali, N. Foloppe posted to no-tag by kaarsinogen on 2009-04-22 20:39:14 as
	A structure-based approach for prediction of protein binding sites in gene upstream regions. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2001), pp. 139-150. by Y. Mandel-Gutfreund, A. Baron, H. Margalit posted to no-tag by kaarsinogen on 2009-04-22 19:12:09 as
	Development of unified statistical potentials describing protein-protein interactions. [My Copy] Biophys J, Vol. 84, No. 3. (March 2003), pp. 1895-1901. by H. Lu, L. Lu, J. Skolnick posted to no-tag by kaarsinogen on 2009-04-21 17:23:08 as along with 8 people bicko mdimmic chad_davis cjeans selrac iris_2001 wilbur kgutwin
	Application of statistical potentials to protein structure refinement from low resolution ab initio models. [My Copy] Biopolymers, Vol. 70, No. 4. (December 2003), pp. 575-584. by H. Lu, J. Skolnick posted to no-tag by kaarsinogen on 2009-04-21 17:22:30 as
	A distance-dependent atomic knowledge-based potential for improved protein structure selection. [My Copy] Proteins, Vol. 44, No. 3. (15 August 2001), pp. 223-232. by H. Lu, J. Skolnick posted to no-tag by kaarsinogen on 2009-04-21 17:21:01 as
	Alternative routes and mutational robustness in complex regulatory networks [My Copy] Biosystems, Vol. 88, No. 1-2. (March 2007), pp. 163-172. by Andreas Wagner, Jeremiah Wright posted to grn by kaarsinogen on 2009-04-15 21:03:12 as along with 2 people eldan wnpx
	Protein-nucleic acid recognition: statistical analysis of atomic interactions and influence of DNA structure. [My Copy] Proteins, Vol. 61, No. 2. (1 November 2005), pp. 258-271. by D. Lejeune, N. Delsaux, B. Charloteaux, A. Thomas, R. Brasseur posted to grn by kaarsinogen on 2009-04-14 21:20:03 as along with 3 people and 1 group svozil aalibes medic0747 Bioinformatics
	Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level. [My Copy] Nucleic Acids Res, Vol. 29, No. 13. (1 July 2001), pp. 2860-2874. by N. M. Luscombe, R. A. Laskowski, J. M. Thornton posted to grn by kaarsinogen on 2009-04-14 20:50:09 as along with 3 people and 8 groups semin shantanu medic0747 structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	A pair-rule gene circuit defines segments sequentially in the short-germ insect Tribolium castaneum. [My Copy] Proc Natl Acad Sci U S A (12 April 2006) by Chong Pyo P. Choe, Sherry C C. Miller, Susan J J. Brown posted to grn by kaarsinogen on 2009-03-26 20:05:18 as along with 1 person and 1 group emilyhare EisenLab
	Distinct double- and single-stranded DNA binding of E. coli replicative DNA polymerase III alpha subunit. [My Copy] ACS chemical biology, Vol. 3, No. 9. (19 September 2008), pp. 577-587. by M. J. McCauley, L. Shokri, J. Sefcikova, C. Venclovas, P. J. Beuning, M. C. Williams posted to grn by kaarsinogen on 2009-03-26 18:31:25 as
	Antimicrobial drug resistance: "Prediction is very difficult, especially about the future". [My Copy] Emerging infectious diseases, Vol. 11, No. 10. (October 2005), pp. 1503-1506. by P. Courvalin posted to grn by kaarsinogen on 2009-03-26 18:21:15 as
	Population genomics of human gene expression [My Copy] Nat Genet, Vol. 39, No. 10. (16 September 2007), pp. 1217-1224. by Barbara E. Stranger, Alexandra C. Nica, Matthew S. Forrest, et al.Antigone Dimas, Christine P. Bird, Claude Beazley, Catherine E. Ingle, Mark Dunning, Paul Flicek, Daphne Koller, Stephen Montgomery, Simon Tavare, Panos Deloukas, Emmanouil T. Dermitzakis posted to grn by kaarsinogen on 2009-03-26 00:33:34 as along with 15 people and 1 group ajbattle ilyashl giovanni alweber athma qfwills guhjy kentsis rdiaz lp2 jo_davies mimulus_99 cisevol annacarina07 dmc cis-regulatory-evolution
	Evolutionary dynamics of prokaryotic transcriptional regulatory networks. [My Copy] Journal of molecular biology, Vol. 358, No. 2. (28 April 2006), pp. 614-633. by M. Madan Babu, S. A. Teichmann, L. Aravind posted to grn by kaarsinogen on 2009-03-23 16:09:56 as along with 8 people chica jjray balabu Retchless tny tvdbulck timflutre cjeans
	Evolution of gene regulatory networks: Robustness as an emergent property of evolution [My Copy] Physica A: Statistical Mechanics and its Applications, Vol. 387, No. 8-9. (15 March 2008), pp. 2170-2186. by Arun Krishnan, Masaru Tomita, Alessandro Giuliani posted to grn by kaarsinogen on 2009-03-20 22:07:20 as along with 1 person antonkratz
	Indeterminacy of reverse engineering of Gene Regulatory Networks: the curse of gene elasticity. [My Copy] PLoS ONE, Vol. 2, No. 6. (2007) by A. Krishnan, A. Giuliani, M. Tomita posted to grn by kaarsinogen on 2009-03-20 21:55:48 as
	Network growth models and genetic regulatory networks [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 73, No. 3. (2006), 031912. by D. V. Foster, S. A. Kauffman, J. E. S. Socolar posted to grn by kaarsinogen on 2009-03-20 21:50:47 as
	Network growth models and genetic regulatory networks [My Copy] (23 May 2006) by D. V. Foster, S. A. Kauffman, J. E. S. Socolar posted to grn by kaarsinogen on 2009-03-20 19:42:00 as
	Power-law distributions in empirical data [My Copy] (2 Feb 2009) by Aaron Clauset, Cosma R. Shalizi, M. E. J. Newman posted to grn by kaarsinogen on 2009-03-06 17:48:59 as along with 61 people and 2 groups Diego_Prada kinop jaia lehalle jsaramak ccthomas vagoskar acrmartins krisl makrehchi jotwin quianominorleo akuhn arsyed coccoinomane janpaniev pawelsobko alexv Borelli tmarscha dpf garyfeng kubyaddi tnhh dmeister ddahlem vtraag mattjb jfelipe yonyoni laurobeltrao mmcgloho galyardt gconaldi egh ansobol lfriedl jjray itmeson dumpa madhadron sdvillal bigbossman merazzle xpontus muraken sugarexpletive jaspervoskuilen tomhebbron gi0rgi0ne amoebe jasonn pprett AbnerCYH halukbingol anhlc stringertheory deanmalmgren jyew nazareno diamantis ReadingLab EntrepreneurialRisks
	Random Boolean network models and the yeast transcriptional network. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 25. (9 December 2003), pp. 14796-14799. by S. Kauffman, C. Peterson, B. Samuelsson, C. Troein posted to grn by kaarsinogen on 2009-01-14 22:20:17 as along with 1 person and 1 group camster dbk-lab
	The human disease network [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690. by Kwang-Il Goh, Michael E. Cusick, David Valle, Barton Childs, Marc Vidal, Albert-LÃ¡szlÃ³ BarabÃ¡si posted to disease_network by kaarsinogen on 2009-01-08 22:30:06 as along with 39 people and 9 groups robfsouza bertelsen smichan biomcgary pawelsobko CurAbility Scis0000002 qluo cbforrest daforerog nedwards Dulcinea saket roys Yanno guhjy aalibes cannin kuhn jfr yas balicea neveaire bundschu raiyar grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele shoshin shikin nolodie mingzhi carlk yaredo Network Analysis of Genes Regulated in Renal Diseases Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab ic4 generif_paper GomezLab
	Distributed robustness versus redundancy as causes of mutational robustness. [My Copy] Bioessays, Vol. 27, No. 2. (February 2005), pp. 176-188. by A. Wagner posted to grn by kaarsinogen on 2008-12-06 23:20:57 as along with 1 person and 1 group stevanspringer FAB-lab
	Modelling and analysis of gene regulatory networks [My Copy] Nat Rev Mol Cell Biol, Vol. 9, No. 10. (October 2008), pp. 770-780. by Guy Karlebach, Ron Shamir posted to grn by kaarsinogen on 2008-12-01 04:41:50 as along with 14 people antonkratz agonzale cannin tklee aviad_work thomaskelder fgibson druvus balicea brianb nedwards dakelley guhjy tmmurali
	Topological and causal structure of the yeast transcriptional regulatory network [My Copy] Nat Genet, Vol. 31, No. 1. (May 2002), pp. 60-63. by Nabil Guelzim, Samuele Bottani, Paul Bourgine, Francois Kepes posted to grn by kaarsinogen on 2008-11-19 20:21:54 as along with 4 people kentz karfunkel Takayuki Borelli
	Collective dynamics of \|[lsquo]\|small-world\|[rsquo]\| networks [My Copy] Nature, Vol. 393, No. 6684. (04 June 1998), pp. 440-442. by Duncan J. Watts, Steven H. Strogatz posted to grn by kaarsinogen on 2008-11-19 18:19:37 as along with 110 people and 14 groups Sergey_gerbek tonyony vgauthier halukbingol rrbarb dannya222 jsaramak christianholz kentz ptony82 TomHubbard fastjoe23 soramame_0518 jaia normaali leonglester makrehchi makukha fierykylin briordan vtraag dexter_shen AJCann jobadge thegoose2 tomasha apeyrache acrmartins sergiun Kovanen orahcio theus Adso mattjb dpf cswinburne jmenche chrisdubois tharris MehdiMoussaid jobriath camster G_RAM kewms KAllendoerfer AdrianMiles mague alexisgallagher zqshen shivaram cmmorel Shirakawa tolosoft nithya nygaard balicea dumpa matteodellamico yoh dullhunk voiklis eldaly ianturton merazzle maqbes muraken zono zeroknowledge choonpeng cerkut xinian mmartin king amac adriandefroment RafG radale jaspervoskuilen timflutre pbrandao sugaya ruvido rsantana cjeans fbaroni michaelmampaey rcrane ransombriggs suizan lpfernandes sbianco kb kaks stefanoallesina beete ladamic iris_2001 livingthingdan jsanpedro jotwin ulmer takeha-e dylanwalker mpotamias jpbarrette Borelli jago ddahlem ilkert tomhebbron eLearning in Leicester Network Data Repository C. elegans / WormBase dbk-lab GraphVis Semantic-Social-Networks microRNA Web2 Soslab CooperationStudies ColDyn contact-id ADMiRes 8_01
	Random graphs with arbitrary degree distributions and their applications. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 64, No. 2 Pt 2. (August 2001) by M. E. Newman, S. H. Strogatz, D. J. Watts posted to grn by kaarsinogen on 2008-11-19 17:58:59 as along with 15 people and 1 group sergiun dylanwalker ganden blue-life123 nolodie camster ansobol jrw ChaTo kubyaddi maqbes jaspervoskuilen ransombriggs peterlikarish navil dbk-lab
	Network motifs in the transcriptional regulation network of Escherichia coli [My Copy] Nature Genetics, Vol. 31, No. 1. (22 April 2002), pp. 64-68. by Shai S. Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon posted to grn by kaarsinogen on 2008-11-19 17:48:01 as along with 18 people and 1 group vtraag sergiun mtagaya cswinburne jstajic jjray ssb nickluscombe gurkanbebek jtaylor jayster4 karfunkel blobbybirdman zibuyu maralena hannahrajasingh Borelli ethkim EBI-regulation
	Computational architecture of the yeast regulatory network. [My Copy] Physical biology, Vol. 2, No. 4. (November 2005) by S. Maslov, K. Sneppen posted to grn by kaarsinogen on 2008-11-18 20:30:20 as
	ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. [My Copy] BMC Bioinformatics, Vol. 7 Suppl 1 (2006) by A. A. Margolin, I. Nemenman, K. Basso, et al.C. Wiggins, G. Stolovitzky, R. Dalla Favera, A. Califano posted to grn by kaarsinogen on 2008-11-18 20:14:01 as along with 18 people frohike dolchan tonamswish Neeperando akraemer APRegier verdicchio behindtherabbit mbehbah1 druvus giovenko ptrobajo kentsis tmmurali jfr shigepong natstreet heliopais
	Artificial gene networks for objective comparison of analysis algorithms [My Copy] Bioinformatics, Vol. 19, No. suppl_2. (27 September 2003), pp. ii122-129. by Pedro Mendes, Wei Sha, Keying Ye posted to grn by kaarsinogen on 2008-11-18 20:06:41 as along with 9 people and 2 groups meanerelk fastjoe23 poirel tonamswish camster tmmurali dragonrez lfriedl pmendes dbk-lab kdl
	Reverse engineering cellular networks. [My Copy] Nat Protoc, Vol. 1, No. 2. (2006), pp. 662-671. by A. A. Margolin, K. Wang, W. K. Lim, M. Kustagi, I. Nemenman, A. Califano posted to grn by kaarsinogen on 2008-11-18 19:58:55 as along with 6 people and 1 group druvus giovenko guhjy jfr cdawson natstreet GIG
	A system for generating transcription regulatory networks with combinatorial control of transcription. [My Copy] Bioinformatics (Oxford, England) (8 April 2008) by Sushmita Roy, Margaret Werner-Washburne, Terran Lane posted to grn by kaarsinogen on 2008-11-18 19:49:42 as along with 3 people bootsy roys guhjy
	Robustness can evolve gradually in complex regulatory gene networks with varying topology. [My Copy] PLoS computational biology, Vol. 3, No. 2. (2 February 2007), e15. by S. Ciliberti, O. C. Martin, A. Wagner posted to grn by kaarsinogen on 2008-11-18 16:55:07 as along with 17 people and 4 groups chica biomcgary eldan ccots indigoviolet emilyhare entropy nickluscombe aswin kengg dolhuis timflutre grahamc shigepong kynn carneiro phoenixzxl EisenLab EBI-regulation SNE Plantandetc
	A duplication growth model of gene expression networks [My Copy] Bioinformatics, Vol. 18, No. 11. (1 November 2002), pp. 1486-1493. by Ashish Bhan, David J. Galas, T. Gregory Dewey posted to grn by kaarsinogen on 2008-11-14 18:26:41 as along with 3 people kentz wangbo gurkanbebek
	Convergent evolution of gene circuits. [My Copy] Nature genetics, Vol. 34, No. 3. (July 2003), pp. 264-266. by G. C. Conant, A. Wagner posted to grn by kaarsinogen on 2008-11-14 00:13:29 as
	Superfamilies of Evolved and Designed Networks [My Copy] Science, Vol. 303, No. 5663. (5 March 2004), pp. 1538-1542. by Ron Milo, Shalev Itzkovitz, Nadav Kashtan, et al.Reuven Levitt, Shai Shen-Orr, Inbal Ayzenshtat, Michal Sheffer, Uri Alon posted to no-tag by kaarsinogen on 2008-11-13 23:33:59 as along with 26 people and 8 groups Katieleonard TimRooney kubyaddi Reg ocs babakap heliopais galyardt ChaTo lfriedl alexg yish balicea ssb ddahlem cmm j3xucite donade bigbossman gurkanbebek shenorr ltabourier michaelmampaey zibuyu tnhh karfunkel Milgrams_Pilgrams kdl mathgamespatterns dtl vds-arg eni FAB-lab ADMiRes
	Emergence of Scaling in Random Networks [My Copy] Science, Vol. 286, No. 5439. (15 October 1999), pp. 509-512. by Albert-László Barabási, Réka Albert posted to no-tag by kaarsinogen on 2008-11-13 22:43:52 as along with 50 people tonyony tessonec leonglester aniakovas nlimam acrmartins bivas makukha melo_mcr thepogoman vmarceau mfuhr tomhebbron eitanla1 voiklis jb44 kinop panisson anphony Adso mattjb phoenixzxl sWorgan czeller alanyang diamantis pgastrein nolodie qwermish dragonrez shivaram tolosoft balicea ddahlem merazzle Borelli muraken lshaw gurkanbebek jaspervoskuilen rcrane ransombriggs idreams2 nkishan justforscraps Evangelia kb Diego_Prada subhacom ethkim

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dna_binding	58
protein-dna_interaction	58
grn	53
protein_structure	27
transcription_factor	26
cpg_islands	25
genome	17
machine_learning	17
2005_2006_dnabp	14
svm	12
protein_descriptors	11
protein-rna	11
e_coli	10
decision_tree	8
evolution	8
gene_regulation	8
network	5
ppi	5
signaling_pathways	5
neural_network	4
operon	4
protein_site_mutation	4
transcription	4
voronoi_paper	4
bayesian_network	3
docking	3
electrostatic_potential	3
gene	3
p53	3
protein_protein_binding	3
pssm	3
asa	2
disease_network	2
omp	2
prokaryotes	2
database	1
do	1
entropy	1
essential	1
horizontal_gene_transfer	1
hydrogen_bonding	1
interaction	1
k-means	1
ortholog	1
population_genetics	1
promoter	1
protein_chips	1
sequence_alignment	1
vmd	1

kaarsinogen's library 233 articles Export

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