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kaarsinogen's transcription_factor [25 articles]

Recent papers added to kaarsinogen's library classified by the tag transcription_factor. You can also see everyone's transcription_factor.
  • Connecting protein structure with predictions of regulatory sites.
    Proc Natl Acad Sci U S A (16 April 2007)
    by Alexandre V V Morozov, Eric D D Siggia
    posted to dna_binding protein-dna_interaction protein_structure transcription_factor by kaarsinogen on 2007-06-01 22:37:08 as *** along with 4 people and 2 groups ana aalibes johncumbers lusk structural_bioinformatics Bioinformatics
  • How do site-specific DNA-binding proteins find their targets?
    Nucl. Acids Res., Vol. 32, No. 10. (3 June 2004), pp. 3040-3052.
    by Stephen E Halford, John F Marko
    posted to dna_binding protein-dna_interaction transcription_factor by kaarsinogen on 2007-06-01 21:29:15 as *** along with 2 people JintuRabha chrn
  • DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces
    Nucl. Acids Res., Vol. 35, No. 5. (12 March 2007), pp. 1465-1477.
    by Harianto Tjong, Huan-Xiang Zhou
    posted to dna_binding machine_learning protein-dna_interaction protein_descriptors protein_structure transcription_factor by kaarsinogen on 2007-06-01 21:15:06 as *** along with 1 person medic0747
  • Conservation of DNA curvature signals in regulatory regions of prokaryotic genes.
    Nucleic Acids Res, Vol. 31, No. 23. (1 December 2003), pp. 6770-6777.
    by R Jáuregui, C Abreu-Goodger, G Moreno-Hagelsieb, J Collado-Vides, E Merino
    posted to dna_binding protein_structure signaling_pathways transcription transcription_factor by kaarsinogen on 2006-10-02 21:19:13 as ***
  • Matrix Formalism to Describe Functional States of Transcriptional Regulatory Systems
    PLoS Computational Biology, Vol. 2, No. 8. (1 August 2006), e101.
    by Erwin P Gianchandani, Jason A Papin, Nathan D Price, Andrew R Joyce, Bernhard O Palsson
    posted to 2005_2006_dnabp gene_regulation protein-dna_interaction signaling_pathways transcription_factor by kaarsinogen on 2006-09-20 18:40:00 as *** along with 2 people and 1 group jfr indigoviolet EisenLab
  • Whole-Genome Discovery of Transcription Factor Binding Sites by Network-Level Conservation
    Genome Res., Vol. 14, No. 1. (1 January 2004), pp. 99-108.
    by Moshe Pritsker, Yir-Chung Liu, Michael A Beer, Saeed Tavazoie
    posted to dna_binding e_coli gene_regulation genome protein-dna_interaction transcription_factor by kaarsinogen on 2006-07-17 22:47:37 as ** along with 2 people koller xili03
  • Discovery of novel transcription factor binding sites by statistical overrepresentation.
    Nucleic Acids Res, Vol. 30, No. 24. (15 December 2002), pp. 5549-5560.
    by S Sinha, M Tompa
    posted to dna_binding e_coli transcription_factor by kaarsinogen on 2006-07-17 22:44:59 as ** along with 9 people dquest xiaobeizhao smiddha GeeSharpMinor xi03 xili03 ep161302 wenhan pradiptaray
  • A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli.
    Genome Res, Vol. 14, No. 2. (February 2004), pp. 201-208.
    by ML Bulyk, AM McGuire, N Masuda, GM Church
    posted to dna_binding e_coli gene_regulation genome protein-dna_interaction transcription_factor by kaarsinogen on 2006-07-17 22:24:10 as ** along with 2 people LeightonP sconlan
  • Adaptive evolution of transcription factor binding sites.
    BMC Evol Biol, Vol. 4, No. 1. (28 October 2004)
    by J Berg, S Willmann, M Lässig
    posted to dna_binding e_coli protein-dna_interaction transcription_factor by kaarsinogen on 2006-07-17 19:07:37 as ** along with 4 people and 1 group bmajoros jjray discreteonyxorb cisevol cis-regulatory-evolution
  • Sequencing and comparison of yeast species to identify genes and regulatory elements
    Nature, Vol. 423, No. 6937. (15 May 2003), pp. 241-254.
    by Manolis Kellis, Nick Patterson, Matthew Endrizzi, Bruce Birren, Eric S Lander
    posted to gene_regulation genome protein-dna_interaction transcription_factor by kaarsinogen on 2006-07-11 20:47:55 as ** along with 3 people lyongu nklee kmdaily
  • Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis.
    Genome Res, Vol. 11, No. 7. (July 2001), pp. 1175-1186.
    by PF Cliften, LW Hillier, L Fulton, T Graves, T Miner, WR Gish, RH Waterston, M Johnston
    posted to dna_binding genome protein-dna_interaction transcription_factor by kaarsinogen on 2006-06-28 23:05:19 as *** along with 2 people evaf nklee
  • Genome-Wide Location and Function of DNA Binding Proteins
    Science, Vol. 290, No. 5500. (22 December 2000), pp. 2306-2309.
    by Bing Ren, Francois Robert, John J Wyrick, Oscar Aparicio, Ezra G Jennings, Itamar Simon, Julia Zeitlinger, Jorg Schreiber, Nancy Hannett, Elenita Kanin, Thomas L Volkert, Christopher J Wilson, Stephen P Bell, Richard A Young
    posted to dna_binding genome protein-dna_interaction transcription_factor by kaarsinogen on 2006-06-28 22:54:05 as *** along with 7 people miguel johncumbers tvdbulck epigenetics yevishere kristallreiner dquest
  • A vision for the future of genomics research
    Nature, Vol. 422, No. 6934. (24 April 2003), pp. 835-847.
    by Francis S Collins, Eric D Green, Alan E Guttmacher, Mark S Guyer
    posted to gene_regulation genome signaling_pathways transcription_factor by kaarsinogen on 2006-06-28 22:44:51 as ** along with 2 people massivemayhem jasonbobe
  • Computational prediction of transcription-factor binding site locations.
    Genome Biol, Vol. 5, No. 1. (2003)
    by ML Bulyk
    posted to dna_binding genome protein-dna_interaction transcription_factor by kaarsinogen on 2006-06-26 20:41:26 as *** along with 6 people and 1 group lusk Stew nklee yevishere xili03 aalibes EisenLab
  • Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity
    Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59.
    by Outi Hallikas, Kimmo Palin, Natalia Sinjushina, Reetta Rautiainen, Juha Partanen, Esko Ukkonen, Jussi Taipale
    posted to 2005_2006_dnabp dna_binding genome protein-dna_interaction transcription_factor by kaarsinogen on 2006-01-30 19:48:04 as ***** along with 13 people and 5 groups Terkko tuck brant xwbcn dchughes nickluscombe olympos cabbagezs karfunkel maximilianh heliopais oelemento emptyhb Bioinformatics EisenLab G4ID EBI-regulation Genetics-of-Gambling
  • A global map of p53 transcription-factor binding sites in the human genome.
    Cell, Vol. 124, No. 1. (13 January 2006), pp. 207-219.
    by CL Wei, Q Wu, VB Vega, KP Chiu, P Ng, T Zhang, A Shahab, HC Yong, Y Fu, Z Weng, J Liu, XD Zhao, JL Chew, YL Lee, VA Kuznetsov, WK Sung, LD Miller, B Lim, ET Liu, Q Yu, HH Ng, Y Ruan
    posted to 2005_2006_dnabp dna_binding genome p53 protein-dna_interaction transcription_factor by kaarsinogen on 2006-01-30 19:46:35 as ***** along with 11 people and 1 group drestion jfr balajis tabu vega kengg jackjackjjj jtomasch karfunkel maralena bozdagd Plantandetc
  • Structure-based prediction of DNA target sites by regulatory proteins.
    Proteins, Vol. 35, No. 1. (1 April 1999), pp. 114-131.
    by H Kono, A Sarai
    posted to dna_binding protein-dna_interaction protein_structure transcription_factor by kaarsinogen on 2006-01-25 22:44:19 as ** along with 1 person medic0747
  • Evolution of transcription factors and the gene regulatory network in Escherichia coli.
    Nucleic Acids Res, Vol. 31, No. 4. (15 February 2003), pp. 1234-1244.
    by M Madan Babu, SA Teichmann
    posted to evolution gene_regulation transcription transcription_factor by kaarsinogen on 2005-11-18 22:28:53 as *** along with 3 people LeightonP hununu discreteonyxorb
  • Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF.
    Nature, Vol. 409, No. 6819. (25 January 2001), pp. 533-538.
    by VR Iyer, CE Horak, CS Scafe, D Botstein, M Snyder, PO Brown
    posted to dna_binding genome transcription_factor by kaarsinogen on 2005-11-04 20:43:00 as read along with 1 person dquest
  • Factors influencing the identification of transcription factor binding sites by cross-species comparison.
    Genome Res, Vol. 12, No. 10. (October 2002), pp. 1523-1532.
    by LA McCue, W Thompson, CS Carmack, CE Lawrence
    posted to dna_binding e_coli transcription_factor by kaarsinogen on 2005-11-04 20:39:29 as *** along with 2 people dquest nklee
  • Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites.
    Bioinformatics, Vol. 19 Suppl 2 (October 2003)
    by C Dieterich, R Herwig, M Vingron
    posted to signaling_pathways transcription_factor dna_binding gene by kaarsinogen on 2005-11-04 20:33:20 as ***
  • Genetic and functional analysis of the multiple antibiotic resistance (mar) locus in Escherichia coli.
    J Bacteriol, Vol. 175, No. 5. (March 1993), pp. 1484-1492.
    by SP Cohen, H Hächler, SB Levy
    posted to e_coli transcription_factor by kaarsinogen on 2005-10-27 21:41:59 as ***
  • Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.
    Proc Natl Acad Sci U S A, Vol. 99, No. 26. (24 December 2002), pp. 17020-17024.
    by RA Welch, V Burland, G Plunkett, P Redford, P Roesch, D Rasko, EL Buckles, SR Liou, A Boutin, J Hackett, D Stroud, GF Mayhew, DJ Rose, S Zhou, DC Schwartz, NT Perna, HL Mobley, MS Donnenberg, FR Blattner
    posted to e_coli transcription_factor by kaarsinogen on 2005-10-27 21:41:28 as *** along with 2 people madhadron Xavier
  • rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 118-121.
    by JV Ponomarenko, TI Merkulova, GV Orlova, ON Fokin, EV Gorshkova, AS Frolov, VP Valuev, MP Ponomarenko
    posted to dna_binding protein-dna_interaction transcription transcription_factor by kaarsinogen on 2005-10-14 20:57:18 as ***
  • Ab Initio Prediction of Transcription Factor Targets Using Structural Knowledge
    PLoS Computational Biology, Vol. 1, No. 1. (June 2005)
    by T Kaplan, N Friedman, H Margalit
    edited by Andrej
    posted to 2005_2006_dnabp transcription_factor by kaarsinogen on 2005-08-03 00:12:11 as ***
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