karbak's library 105 articles Export

	RNA-peptide fusions for the in vitro selection of peptides and proteins [My Copy] PNAS, Vol. 94, No. 23. (11 November 1997), pp. 12297-12302. by Richard W. Roberts, Jack W. Szostak posted to fusion peptide rna technique by karbak on 2007-06-09 18:01:21 as
	Identifying structural motifs in proteins. [My Copy] Pac Symp Biocomput (2003), pp. 228-239. by R. Singh, M. Saha posted to 3dm by karbak on 2007-04-19 21:50:50 as
	TRILOGY: Discovery of sequence-structure patterns across diverse proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 13. (25 June 2002), pp. 8500-8505. by P. Bradley, P. S. Kim, B. Berger posted to 3dm by karbak on 2007-04-19 21:50:16 as
	Structure alignment based on coding of local geometric measures. [My Copy] BMC bioinformatics, Vol. 7 (14 July 2006), 346. by Peter L. Chang, Andrew W. Rinne, T. Gregory Dewey posted to 3dm by karbak on 2007-04-19 21:26:44 as along with 1 person ubcg08l
	MUSTANG: A multiple structural alignment algorithm [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 64, No. 3. (2006), pp. 559-574. by Arun S. Konagurthu, James C. Whisstock, Peter J. Stuckey, Arthur M. Lesk posted to 3dm by karbak on 2007-04-19 21:26:31 as along with 4 people and 3 groups ana jwm rabio Thaverkamp structural_bioinformatics Bioinformatics Microbial-Ecology
	ROC and confusion analysis of structure comparison methods identify the main causes of divergence from manual protein classification. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by V. Sam, C. H. Tai, J. Garnier, J. F. Gibrat, B. Lee, P. J. Munson posted to 3dm by karbak on 2007-04-19 21:24:51 as along with 1 person rabio
	Sensitivity and selectivity in protein structure comparison. [My Copy] Protein Sci, Vol. 13, No. 3. (March 2004), pp. 773-785. by M. L. Sierk, W. R. Pearson posted to 3dm by karbak on 2007-04-19 21:24:31 as along with 3 people and 2 groups ana pansapiens huyun110 structural_bioinformatics Bioinformatics
	Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. [My Copy] J Mol Biol, Vol. 346, No. 4. (4 March 2005), pp. 1173-1188. by R. Kolodny, P. Koehl, M. Levitt posted to 3dm by karbak on 2007-04-19 21:23:41 as along with 5 people and 2 groups ana lulab balajis analogAI reyez structural_bioinformatics Bioinformatics
	Structures of protein complexes by multidimensional heteronuclear magnetic resonance spectroscopy. [My Copy] Crit Rev Biochem Mol Biol, Vol. 30, No. 5. (1995), pp. 351-385. by A. M. Gronenborn, G. M. Clore posted to nmr protein_structure by karbak on 2007-03-10 23:31:41 as
	Get ready for 24-hour living - health - 18 February 2006 - New Scientist [My Copy] New Scientist, No. 2539. (18 February 2006), 34. by Graham Lawson posted to general_interest sleep by karbak on 2006-11-22 22:16:49 as
	The fumarate sensor DcuS: progress in rapid protein fold elucidation by combining protein structure prediction methods with NMR spectroscopy [My Copy] Journal of Magnetic Resonance, Vol. 173, No. 2. (April 2005), pp. 310-316. by Jens Meiler, David Baker posted to david_baker nmr by karbak on 2006-03-31 22:36:55 as along with 1 person apaydin
	All are not equal: A benchmark of different homology modeling programs [My Copy] Protein Sci, Vol. 14, No. 5. (1 May 2005), pp. 1315-1327. by Bjorn Wallner, Arne Elofsson posted to computational protein_structure structure_prediction by karbak on 2006-02-25 23:12:50 as along with 6 people and 2 groups cdeane marcius eweaver BioNica rsantana hmk BioinfoCIPF SGU-CIPF
	MEK and Cdc2 Kinase Are Sequentially Required for Golgi Disassembly in MDCK Cells by the Mitotic Xenopus Extracts [My Copy] J. Cell Biol., Vol. 149, No. 2. (17 April 2000), pp. 357-368. by Fumi Kano, Katsuya Takenaka, Akitsugu Yamamoto, Kuniaki Nagayama, Eisuke Nishida, Masayuki Murata posted to golgi_mitosis by karbak on 2006-02-25 21:28:09 as
	In Search of an Essential Step during Mitotic Golgi Disassembly and Inheritance [My Copy] Experimental Cell Research, Vol. 271, No. 1. (15 November 2001), pp. 22-27. by Manojkumar A. Puthenveedu, Adam D. Linstedt posted to golgi_mitosis by karbak on 2006-02-25 21:24:05 as
	Cell-cycle-specific Golgi fragmentation: how and why? [My Copy] Curr Opin Cell Biol, Vol. 15, No. 4. (August 2003), pp. 462-467. by A. Colanzi, C. Suetterlin, V. Malhotra posted to golgi_mitosis by karbak on 2006-02-25 21:08:52 as along with 1 person laurabailey
	Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data. [My Copy] Proteins. , Vol. 61, No. 1. (1 October 2005), pp. 21-35. by H. Chen, H. X. Zhou posted to nmr protein_interaction by karbak on 2006-02-12 10:11:34 as along with 2 people dfdong qluo
	Intrinsic dynamics of an enzyme underlies catalysis [My Copy] Nature, Vol. 438, No. 7064. (3 November 2005), pp. 117-121. by Elan Z. Eisenmesser, Oscar Millet, Wladimir Labeikovsky, et al.Dmitry M. Korzhnev, Magnus Wolf-Watz, Daryl A. Bosco, Jack J. Skalicky, Lewis E. Kay, Dorothee Kern posted to catalysis nmr protein_dynamics by karbak on 2006-02-12 08:00:06 as along with 8 people mkrishna barry BragilMassoud lna dlr tny jlh64 rph
	Chaos game representation of gene structure. [My Copy] Nucleic Acids Res, Vol. 18, No. 8. (25 April 1990), pp. 2163-2170. by H. J. Jeffrey posted to computational dna general_interest by karbak on 2006-02-04 19:44:37 as
	Simshift: identifying structural similarities from NMR chemical shifts. [My Copy] Bioinformatics (29 November 2005) by Simon W W. Ginzinger, Johannes Fischer posted to chem_shifts protein_structure by karbak on 2006-01-25 17:59:51 as
	Log-normal Distributions across the Sciences: Keys and Clues [My Copy] BioScience, Vol. 51, No. 5. (1 May 2001), pp. 341-352. by E. Limpert, W. A. Stahel, M. Abbt posted to general_interest by karbak on 2006-01-19 02:33:38 as along with 13 people and 3 groups rcrane bertelsen Kovanen fornstar ansobol garyfeng ChaTo dfrankow harperf metamerist rubendrr feenstra kgajos ReadingLab GroupLens cytoskeleton-and-afm
	Can a Biologist Fix a Radio? — or, What I Learned while Studying Apoptosis [My Copy] Biochemistry (Moscow), Vol. 69, No. 12. (2004), pp. 1403-1406. by Y. Lazebnik posted to general_interest by karbak on 2006-01-19 02:26:59 as
	The Origins of Eukaryotic Gene Structure [My Copy] Mol Biol Evol, Vol. 23, No. 2. (1 February 2006), pp. 450-468. by Michael Lynch posted to evolution by karbak on 2006-01-11 05:48:32 as along with 26 people and 10 groups operon daveGerrard inesdesantiago Ema stevanspringer dayjm Ayest indigoviolet tny xwbcn dchughes petecl penka mtagaya madhadron cmm brixtonmc zhangli msierk brettc web20student BioNica krishnaJCSG timflutre jwestbrook ArtemPankin BergmanLab EisenLab Computational_Systems_Biology Nie FAB-lab G4ID Bioinformatics_MDACC evo-devo King_Lab Genetics-of-Gambling
	Thermodynamics of protein folding: a microscopic view. [My Copy] Biophys Chem, Vol. 100, No. 1-3. (2003), pp. 367-395. by T. Lazaridis, M. Karplus posted to protein_folding protein_structure thermodynamics by karbak on 2005-12-03 18:10:14 as along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
	Effective energy functions for protein structure prediction. [My Copy] Curr Opin Struct Biol, Vol. 10, No. 2. (April 2000), pp. 139-145. by T. Lazaridis, M. Karplus posted to energy_fxns protein_folding protein_structure review by karbak on 2005-12-03 18:08:58 as along with 2 people and 2 groups nigham marcius BioinfoCIPF SGU-CIPF
	Branch-and-Terminate: a combinatorial optimization algorithm for protein design [My Copy] Structure, Vol. 7, No. 9. (15 September 1999), pp. 1089-1098. by D. Benjamin Gordon, Stephen L. Mayo posted to protein_design protein_structure scp by karbak on 2005-12-03 18:03:49 as
	Exploring the conformational space of protein side chains using dead-end elimination and the A* algorithm. [My Copy] Proteins, Vol. 33, No. 2. (1 November 1998), pp. 227-239. by A. R. Leach, A. P. Lemon posted to protein_design protein_structure scp by karbak on 2005-12-03 17:34:27 as along with 2 people karinaecomp dfgreen
	A graph-theory algorithm for rapid protein side-chain prediction. [My Copy] Protein Sci, Vol. 12, No. 9. (September 2003), pp. 2001-2014. by A. A. Canutescu, A. A. Shelenkov, R. L. Dunbrack posted to protein_design protein_structure scp by karbak on 2005-12-03 17:31:15 as along with 11 people oceanwind mcbla nigham bicko blackbart bluvsh1 rsantana mijam jwm carlk newton1234
	Modeling side-chain conformation for homologous proteins using an energy-based rotamer search. [My Copy] J Mol Biol, Vol. 229, No. 4. (20 February 1993), pp. 996-1006. by C. Wilson, L. M. Gregoret, D. A. Agard posted to protein_structure scp by karbak on 2005-12-03 17:29:57 as
	Modelling protein side-chain conformations using constraint logic programming. [My Copy] Comput Chem, Vol. 26, No. 1. (December 2001), pp. 85-95. by M. T. Swain, G. J. Kemp posted to protein_design protein_structure scp by karbak on 2005-12-03 17:25:25 as along with 1 person carlk
	Improved side-chain prediction accuracy using an ab initio potential energy function and a very large rotamer library. [My Copy] Protein Sci, Vol. 13, No. 3. (March 2004), pp. 735-751. by R. W. Peterson, P. L. Dutton, A. J. Wand posted to protein_design protein_structure scp by karbak on 2005-12-03 17:17:27 as along with 2 people blackbart carlk
	Half right. [My Copy] Genome Biol, Vol. 6, No. 10. (2005) by G. A. Petsko posted to general_interest by karbak on 2005-11-24 23:55:21 as
	Prediction of proton chemical shifts in RNA. Their use in structure refinement and validation. [My Copy] J Biomol NMR, Vol. 21, No. 1. (September 2001), pp. 11-29. by J. A. Cromsigt, C. W. Hilbers, S. S. Wijmenga posted to chem_shifts rna shift_prediction by karbak on 2005-11-14 18:10:33 as
	Bayesian statistical analysis of protein side-chain rotamer preferences. [My Copy] Protein Sci, Vol. 6, No. 8. (August 1997), pp. 1661-1681. by R. L. Dunbrack, F. E. Cohen posted to protein_structure structure_prediction by karbak on 2005-11-10 07:20:58 as along with 12 people and 2 groups nknii j3xucite dgront blackbart kazemi rsantana hmk LamBras mijam jwm phoenixzxl zwang MuraLab TCR_Signaling
	Simultaneous determination of protein structure and dynamics [My Copy] Nature, Vol. 433, No. 7022. (13 January 2005), pp. 128-132. by Kresten Lindorff-Larsen, Robert B. Best, Mark A. Depristo, Christopher M. Dobson, Michele Vendruscolo posted to dynamics protein_structure by karbak on 2005-11-08 23:11:22 as along with 15 people and 3 groups Diego_Prada xdeupi A_Coletta_Thesis apaydin barry lillekatt baaden lna dgront allmensch daevans rsantana jlh64 biehl rph Structural Biology Group TorVergata structural_bioinformatics Bioinformatics
	Advantages of fine-grained side chain conformer libraries [My Copy] Protein Engineering, Design and Selection, Vol. 16, No. 12. (December 2003), pp. 963-969. by Reshma P. Shetty, Paul I. de Bakker, Mark A. Depristo, Tom L. Blundell posted to protein_structure structure_prediction by karbak on 2005-11-08 22:58:29 as
	Methods for molecular dynamics simulations of protein folding/unfolding in solution [My Copy] Methods, Vol. 34, No. 1. (September 2004), pp. 112-120. by David A. Beck, Valerie Daggett posted to protein_folding tocopy by karbak on 2005-11-06 16:25:31 as along with 2 people yxue choonpeng
	Computational methods for generating models of denatured and partially folded proteins [My Copy] Methods, Vol. 34, No. 1. (September 2004), pp. 144-150. by L. Smith posted to protein_folding protein_structure tocopy by karbak on 2005-11-06 15:52:35 as along with 3 people yxue flbarroso allmensch
	Principles that govern the folding of protein chains. [My Copy] Science (New York, N.Y.), Vol. 181, No. 96. (20 July 1973), pp. 223-230. by C. B. Anfinsen posted to protein_folding protein_structure tocopy by karbak on 2005-11-06 15:29:08 as along with 7 people dfdong rsaito cactus thaliana fjc1 rabio granujilla
	The structure of scientific collaboration networks [My Copy] (12 Jul 2000) by M. E. J. Newman posted to mlp by karbak on 2005-10-18 22:07:18 as along with 9 people and 3 groups nicklynch korakot PatrickD pdlug annagold elijahwright soblo ianturton salvoscellato Philosophy_of_Information Blog_and_Wiki_Research Wikipedia
	The structure and function of complex networks [My Copy] (25 Mar 2003) by M. E. J. Newman posted to mlp by karbak on 2005-10-18 22:06:48 as along with 62 people and 14 groups makrehchi gagliol brewbooks vtraag apicu studentx juhop operon kshundyak Kovanen mpotamias aalves Bolozna Adso soramame_0518 phauly snuppepuppan korakot trunov rmj001 mrm Nichtich pdlug xxc momonga nkorf ChaTo imouthesmp ldietz rahul tuck lyongu cwoodward yish scottmoody ddahlem danieltruemper gane5h fukken AbnerCYH anon_pl shashikant esayre azygmunt adriandefroment kray carolaccs mylit ransombriggs theus jmarcelino salvoscellato Kwisatz ffloeck AnneB daniel51 xleonzhao thecolourblue apwesolowski dpf rrbarb Diego_Prada Philosophy_of_Information Blog_and_Wiki_Research SRA_at_IRST IS-Lab Semantic-Social-Networks Wikipedia mathgamespatterns semantic-multicast-routing SRL dtl vds-arg eni AGH-IISG CSBBGraphTheory
	Data clustering: a review [My Copy] ACM Comput. Surv., Vol. 31, No. 3. (September 1999), pp. 264-323. by A. K. Jain, M. N. Murty, P. J. Flynn posted to mlp by karbak on 2005-10-18 22:04:14 as along with 63 people and 15 groups emailhy erikv thegoose Lestropie urvoy stharward thefillm operon avoregnitiv fer votis pick600 pbk nhoussos qwermish svozil takeha-e eabait mthomure mercutio egh ericyu dgruiz pdlug thsant mapio mhay davidbrooks imouthesmp dfrankow rahul marcius stagediver sterovetta sangeetha chadhogg sdvillal dgront styliani alexhofmann gane5h ianturton bigbossman perceptron allmensch aviad_work julianpan atbrew sugarexpletive KillianKay mkolar sajan dvisoin theodora jcsilva furykerry koles paulovn AbnerCYH tnhh flaviovdf dragonrez iraklis elan video_retrieval kdl GroupLens Bioinformatics SRL insilicodrug BioinfoCIPF SGU-CIPF MScResearchRessources NDSiTransitRessources NDS106ProjectRessources NDSIntraVehicularResearch ahat Community_SSTZ
	Foundations of a query and simulation system for the modeling of biochemical and biological processes. [My Copy] Pac Symp Biocomput (2003), pp. 116-127. by M. Antoniotti, F. Park, A. Policriti, N. Ugel, B. Mishra posted to computational general_interest by karbak on 2005-08-06 00:16:44 as
	Clustering algorithms for identifying core atom sets and for assessing the precision of protein structure ensembles [My Copy] Proteins: Structure, Function, and Genetics, Vol. 59, No. 4. (8 April 2005), pp. 673-686. by David A. Snyder, Gaetano T. Montelione posted to nmr protein_structure by karbak on 2005-08-05 10:28:56 as along with 3 people and 2 groups ana barry dgront structural_bioinformatics Bioinformatics
	An amino acid has two sides: a new 2D measure provides a different view of solvent exposure. [My Copy] Proteins, Vol. 59, No. 1. (1 April 2005), pp. 38-48. by T. Hamelryck posted to apbc2006 by karbak on 2005-07-21 12:03:59 as along with 3 people nickolay massivemayhem gisle
	Evolution of the Protein Repertoire [My Copy] Science, Vol. 300, No. 5626. (13 June 2003), pp. 1701-1703. by Cyrus Chothia, Julian Gough, Christine Vogel, Sarah A. Teichmann posted to general_interest genomics protein_structure by karbak on 2005-07-18 02:37:15 as along with 3 people and 2 groups ana barry tny structural_bioinformatics Bioinformatics
	Relationship between protein structures and disulfide-bonding patterns. [My Copy] Proteins, Vol. 53, No. 1. (1 October 2003), pp. 1-5. by C. C. Chuang, C. Y. Chen, J. M. Yang, P. C. Lyu, J. K. Hwang posted to disulfide protein_structure structure_prediction by karbak on 2005-07-18 02:31:03 as
	A Fluoroquinolone Resistance Protein from Mycobacterium tuberculosis That Mimics DNA [My Copy] Science, Vol. 308, No. 5727. (3 June 2005), pp. 1480-1483. by Subray S. Hegde, Matthew W. Vetting, Steven L. Roderick, et al.Lesley A. Mitchenall, Anthony Maxwell, Howard E. Takiff, John S. Blanchard posted to protein_structure tb by karbak on 2005-06-09 21:35:33 as along with 1 person jwm
	Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2347-2355. by R. J. Morris, R. J. Najmanovich, A. Kahraman, J. M. Thornton posted to computational protein_structure by karbak on 2005-06-03 22:36:03 as along with 1 person tjimenez
	Structure-based systems biology: a zoom lens for the cell. [My Copy] FEBS Lett, Vol. 579, No. 8. (21 March 2005), pp. 1854-1858. by P. Aloy, R. B. Russell posted to no-tag by karbak on 2005-05-25 12:15:24 as along with 4 people and 2 groups barry lyongu biosv chad_davis structural_bioinformatics Bioinformatics
	Evolution of protein structures and functions. [My Copy] Curr Opin Struct Biol, Vol. 12, No. 3. (June 2002), pp. 400-408. by L. N. Kinch, N. V. Grishin posted to protein_structure review by karbak on 2005-05-25 12:14:59 as along with 5 people and 7 groups korakot matzke ana barry joergkurtwegner Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics

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protein_structure	50
structure_prediction	23
computational	17
nmr	14
general_interest	13
protein_folding	8
3dm	7
evolution	7
15872	6
algorithms	6
casp	6
protein_design	6
scp	6
membrane_protein	5
shift_prediction	5
protein_interaction	4
review	4
genomics	3
golgi_mitosis	3
math	3
mlp	3
protein_evolution	3
rna	3
tocopy	3
bioinformatics	2
chem_shifts	2
complex_proteins	2
dna	2
networks	2
ab_initio	1
amino_acids	1
apbc2006	1
blast	1
catalysis	1
cell_bio	1
complexity	1
consensus	1
database	1
david_baker	1
disulfide	1
dynamics	1
energy_fxns	1
enzyme	1
fragment_approach	1
fusion	1
golgi	1
immunology	1
info_theory	1
machine_learning	1
manoj	1
pdb	1
peptide	1
phylogeny	1
protein_dynamics	1
protein_sequence	1
proteomics	1
s2c	1
sequence	1
shift_physics	1
sleep	1
statistics	1
svm	1
tb	1
technique	1
thermodynamics	1
transcription	1
transpos	1
tutorial	1
xrc	1

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