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kaspermunch's library [316 articles]

Recent papers added to kaspermunch's library.
  • Automatic generation of gene finders for eukaryotic species
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Kasper Munch, Anders Krogh
    posted to genefinding by kaspermunch on 2007-09-11 21:21:25 as ** along with 2 people and 1 group alexl GustavoLacerda Bioinformatics
  • The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
    PLoS Biology, Vol. 5, No. 3. (1 March 2007), e77.
    by Douglas B Rusch, Aaron L Halpern, Granger Sutton, Karla B Heidelberg, Shannon Williamson, Shibu Yooseph, Dongying Wu, Jonathan A Eisen, Jeff M Hoffman, Karin Remington, Karen Beeson, Bao Tran, Hamilton Smith, Holly Baden-Tillson, Clare Stewart, Joyce Thorpe, Jason Freeman, Cynthia Andrews-Pfannkoch, Joseph E Venter, Kelvin Li, Saul Kravitz, John F Heidelberg, Terry Utterback, Yu-Hui Rogers, Luisa I Falcón, Valeria Souza, Germán Bonilla-Rosso, Luis E Eguiarte, David M Karl, Shubha Sathyendranath, Trevor Platt, Eldredge Bermingham, Victor Gallardo, Giselle Tamayo-Castillo, Michael R Ferrari, Robert L Strausberg, Kenneth Nealson, Robert Friedman, Marvin Frazier, Craig J Venter
    posted to metagenomics by kaspermunch on 2007-05-14 10:21:42 as ** along with 9 people and 5 groups djkt jmeppley michC jdelcampo stajich skoch3 beatrizfernandez kinestetika Thaverkamp iSEEM Bioinformatics Microbial-Ecology Koch_Lab microbiology_nijmegen
  • The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families.
    PLoS Biol, Vol. 5, No. 3. (13 March 2007)
    by Shibu Yooseph, Granger Sutton, Douglas BB Rusch, Aaron LL Halpern, Shannon JJ Williamson, Karin Remington, Jonathan AA Eisen, Karla BB Heidelberg, Gerard Manning, Weizhong Li, Lukasz Jaroszewski, Piotr Cieplak, Christopher SS Miller, Huiying Li, Susan TT Mashiyama, Marcin PP Joachimiak, Christopher van Belle, John-Marc M Chandonia, David AA Soergel, Yufeng Zhai, Kannan Natarajan, Shaun Lee, Benjamin JJ Raphael, Vineet Bafna, Robert Friedman, Steven EE Brenner, Adam Godzik, David Eisenberg, Jack EE Dixon, Susan SS Taylor, Robert LL Strausberg, Marvin Frazier, Craig
    posted to metagenomics by kaspermunch on 2007-05-14 10:20:07 as ** along with 5 people and 4 groups jlgreen mjetten vrich jmeppley michC iSEEM Green Lab microbiology_nijmegen Bioinformatics
  • Evidence of ancient DNA reveals the first European lineage in Iron Age Central China.
    Proc Biol Sci (24 April 2007)
    by C Z Z Xie, C X X Li, Y Q Q Cui, Q C C Zhang, Y Q Q Fu, H Zhu, H Zhou
    posted to ancient dna by kaspermunch on 2007-04-30 10:01:18 as ** along with 1 group Bioinformatics
  • Genetic isolation of a now extinct population of bottlenose dolphins (Tursiops truncatus).
    Proc Biol Sci (24 April 2007)
    by Courtney Nichols, Jerry Herman, Oscar E E Gaggiotti, Keith M M Dobney, Kim Parsons, A Rus R Hoelzel
    posted to ancient dna by kaspermunch on 2007-04-30 09:59:03 as *** along with 1 person and 2 groups cursonivel1 Bioinformatics cursonivel1
  • Sequencing and analysis of Neanderthal genomic DNA.
    Science, Vol. 314, No. 5802. (17 November 2006), pp. 1113-1118.
    by JP Noonan, G Coop, S Kudaravalli, D Smith, J Krause, J Alessi, F Chen, D Platt, S Pääbo, JK Pritchard, EM Rubin
    posted to adna neanderthal by kaspermunch on 2007-04-04 09:59:09 as *** along with 9 people and 1 group myourshaw Archaeogenetics theseuskf biblio24 vplagnol Mochimasa ibuch ryanraaum hpaces Bioinformatics
  • Analysis of one million base pairs of Neanderthal DNA
    Nature, Vol. 444, No. 7117. (2006), pp. 330-336.
    by Richard E Green, Johannes Krause, Susan E Ptak, Adrian W Briggs, Michael T Ronan, Jan F Simons, Lei Du, Michael Egholm, Jonathan M Rothberg, Maja Paunovic, Svante Pääbo
    posted to adna by kaspermunch on 2007-04-04 09:57:27 as *** along with 3 people and 1 group pradiptaray Archaeogenetics EsepBib Bioinformatics
  • Molecular coproscopy: dung and diet of the extinct ground sloth Nothrotheriops shastensis.
    Science, Vol. 281, No. 5375. (17 July 1998), pp. 402-406.
    by HN Poinar, M Hofreiter, WG Spaulding, PS Martin, BA Stankiewicz, H Bland, RP Evershed, G Possnert, S Pääbo
    posted to ancient by kaspermunch on 2007-03-28 11:43:08 as ** along with 1 group Bioinformatics
  • Use of rpoB and 16S rRNA genes to analyse bacterial diversity of a tropical soil using PCR and DGGE.
    Lett Appl Microbiol, Vol. 35, No. 4. (2002), pp. 316-320.
    by RS Peixoto, HL da Costa Coutinho, NG Rumjanek, A Macrae, AS Rosado
    posted to 16s rpob by kaspermunch on 2007-03-12 08:54:02 as *** along with 1 group Bioinformatics
  • Molecular analysis of Neanderthal DNA from the northern Caucasus.
    Nature, Vol. 404, No. 6777. (30 March 2000), pp. 490-493.
    by IV Ovchinnikov, A Götherström, GP Romanova, VM Kharitonov, K Lidén, W Goodwin
    posted to neanderthal by kaspermunch on 2007-02-27 20:55:24 as ***** along with 1 person and 1 group ryanraaum Bioinformatics
  • A view of Neandertal genetic diversity.
    Nat Genet, Vol. 26, No. 2. (October 2000), pp. 144-146.
    by M Krings, C Capelli, F Tschentscher, H Geisert, S Meyer, A von Haeseler, K Grossschmidt, G Possnert, M Paunovic, S Pääbo
    posted to neanderthal by kaspermunch on 2007-02-27 20:52:37 as ***** along with 1 person and 1 group Archaeogenetics Bioinformatics
  • DNA sequence of the mitochondrial hypervariable region II from the neandertal type specimen.
    Proc Natl Acad Sci U S A, Vol. 96, No. 10. (11 May 1999), pp. 5581-5585.
    by M Krings, H Geisert, RW Schmitz, H Krainitzki, S Pääbo
    posted to neanderthal by kaspermunch on 2007-02-27 20:51:27 as ***** along with 2 people and 1 group Archaeogenetics Mochimasa Bioinformatics
  • Neandertal DNA sequences and the origin of modern humans.
    Cell, Vol. 90, No. 1. (11 July 1997), pp. 19-30.
    by M Krings, A Stone, RW Schmitz, H Krainitzki, M Stoneking, S Pääbo
    posted to neanderthal by kaspermunch on 2007-02-27 20:50:18 as ***** along with 1 group Bioinformatics
  • Phylogenies from molecular sequences: inference and reliability.
    Annu Rev Genet, Vol. 22 (1988), pp. 521-565.
    by J Felsenstein
    posted to population by kaspermunch on 2007-02-27 20:45:41 as ***** along with 1 group Bioinformatics
  • Evolutionary trees from DNA sequences: a maximum likelihood approach.
    J Mol Evol, Vol. 17, No. 6. (1981), pp. 368-376.
    by J Felsenstein
    posted to population by kaspermunch on 2007-02-27 20:43:58 as ***** along with 7 people and 1 group bpb chrn dquest djkt timflutre dmc elfar Bioinformatics
  • Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data.
    Genetics, Vol. 161, No. 3. (July 2002), pp. 1307-1320.
    by AJ Drummond, GK Nicholls, AG Rodrigo, W Solomon
    posted to population by kaspermunch on 2007-02-27 20:40:52 as ***** along with 1 person and 1 group AaronDarling Bioinformatics
  • Genomic sequencing of Pleistocene cave bears.
    Science, Vol. 309, No. 5734. (22 July 2005), pp. 597-599.
    by JP Noonan, M Hofreiter, D Smith, JR Priest, N Rohland, G Rabeder, J Krause, JC Detter, S Pääbo, EM Rubin
    posted to ancient dna by kaspermunch on 2007-02-27 20:38:38 as ***** along with 1 person and 1 group joshuashen Bioinformatics
  • Nuclear gene sequences from a late pleistocene sloth coprolite.
    Curr Biol, Vol. 13, No. 13. (1 July 2003), pp. 1150-1152.
    by H Poinar, M Kuch, G Mcdonald, P Martin, S Pääbo
    posted to ancient dna by kaspermunch on 2007-02-27 20:36:43 as ***** along with 1 group Bioinformatics
  • Evolution, systematics, and phylogeography of pleistocene horses in the new world: a molecular perspective.
    PLoS Biol, Vol. 3, No. 8. (August 2005)
    by J Weinstock, E Willerslev, A Sher, W Tong, SY Ho, D Rubenstein, J Storer, J Burns, L Martin, C Bravi, A Prieto, D Froese, E Scott, L Xulong, A Cooper
    posted to ancient dna genetics population by kaspermunch on 2007-02-27 20:33:17 as ***** along with 1 group Bioinformatics
  • Rise and fall of the Beringian steppe bison.
    Science, Vol. 306, No. 5701. (26 November 2004), pp. 1561-1565.
    by B Shapiro, AJ Drummond, A Rambaut, MC Wilson, PE Matheus, AV Sher, OG Pybus, MT Gilbert, I Barnes, J Binladen, E Willerslev, AJ Hansen, GF Baryshnikov, JA Burns, S Davydov, JC Driver, DG Froese, CR Harington, G Keddie, P Kosintsev, ML Kunz, LD Martin, RO Stephenson, J Storer, R Tedford, S Zimov, A Cooper
    posted to population by kaspermunch on 2007-02-27 20:30:35 as ***** along with 1 group Bioinformatics
  • Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis.
    Genetics, Vol. 167, No. 2. (June 2004), pp. 747-760.
    by J Hey, R Nielsen
    posted to population by kaspermunch on 2007-02-27 20:25:06 as ***** along with 1 person and 1 group AaronDarling Bioinformatics
  • Distinguishing migration from isolation: a Markov chain Monte Carlo approach.
    Genetics, Vol. 158, No. 2. (June 2001), pp. 885-896.
    by R Nielsen, J Wakeley
    posted to population by kaspermunch on 2007-02-27 20:23:44 as ***** along with 1 group Bioinformatics
  • Line-of-descent and genealogical processes, and their applications in population genetics models.
    Theor Popul Biol, Vol. 26, No. 2. (October 1984), pp. 119-164.
    by S Tavaré
    posted to population by kaspermunch on 2007-02-27 20:22:12 as ***** along with 1 group Bioinformatics
  • Properties of a neutral allele model with intragenic recombination.
    Theor Popul Biol, Vol. 23, No. 2. (April 1983), pp. 183-201.
    by RR Hudson
    posted to populaton by kaspermunch on 2007-02-27 20:16:46 as ***** along with 1 group Bioinformatics
  • Genealogical inference from microsatellite data.
    Genetics, Vol. 150, No. 1. (September 1998), pp. 499-510.
    by IJ Wilson, DJ Balding
    posted to population by kaspermunch on 2007-02-27 20:14:33 as ***** along with 1 group Bioinformatics
  • Maximum likelihood estimation of population divergence times and population phylogenies under the infinite sites model.
    Theor Popul Biol, Vol. 53, No. 2. (April 1998), pp. 143-151.
    by R Nielsen
    posted to population by kaspermunch on 2007-02-27 20:13:22 as ***** along with 1 group Bioinformatics
  • Estimating ancestral population parameters.
    Genetics, Vol. 145, No. 3. (March 1997), pp. 847-855.
    by J Wakeley, J Hey
    posted to population by kaspermunch on 2007-02-27 20:11:53 as ***** along with 2 people and 1 group djkt ryanraaum Bioinformatics
  • The coalescent process with selfing.
    Genetics, Vol. 146, No. 3. (July 1997), pp. 1185-1195.
    by M Nordborg, P Donnelly
    posted to coalescent by kaspermunch on 2007-02-27 20:11:00 as ***** along with 1 group Bioinformatics
  • Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling.
    Genetics, Vol. 140, No. 4. (August 1995), pp. 1421-1430.
    by MK Kuhner, J Yamato, J Felsenstein
    posted to population by kaspermunch on 2007-02-27 20:09:19 as ***** along with 1 group Bioinformatics
  • Sampling theory for neutral alleles in a varying environment.
    Philos Trans R Soc Lond B Biol Sci, Vol. 344, No. 1310. (29 June 1994), pp. 403-410.
    by RC Griffiths, S Tavaré
    posted to coalescent by kaspermunch on 2007-02-27 20:07:50 as ***** along with 1 group Bioinformatics
  • Estimating effective population size from samples of sequences: inefficiency of pairwise and segregating sites as compared to phylogenetic estimates.
    Genet Res, Vol. 59, No. 2. (April 1992), pp. 139-147.
    by J Felsenstein
    posted to population by kaspermunch on 2007-02-27 20:06:17 as ***** along with 1 group Bioinformatics
  • A Test of Neutral Molecular Evolution Based on Nucleotide Data
    Genetics, Vol. 116, No. 1. (1 May 1987), pp. 153-159.
    by Richard R Hudson, Martin Kreitman, Montserrat Aguade
    posted to evolution molecular by kaspermunch on 2007-02-27 14:00:06 as ** along with 1 person and 1 group djkt Bioinformatics
  • Inferring evolutionary rates using serially sampled sequences from several populations.
    Mol Biol Evol, Vol. 20, No. 12. (December 2003), pp. 2010-2018.
    by AG Rodrigo, M Goode, R Forsberg, HA Ross, A Drummond
    posted to coalescent time-structure by kaspermunch on 2007-02-15 20:32:50 as ***** along with 1 group Bioinformatics
  • Tree measures and the number of segregating sites in time-structured population samples.
    BMC Genet, Vol. 6 (2005)
    by R Forsberg, AJ Drummond, J Hein
    posted to coalescent time-structure by kaspermunch on 2007-02-15 20:31:15 as ***** along with 1 group Bioinformatics
  • Reanalysis of Eurasian population history: ancient DNA evidence of population affinities.
    Hum Biol, Vol. 78, No. 4. (August 2006), pp. 413-440.
    by CC Bennett, FA Kaestle
    posted to population genetics dna ancient by kaspermunch on 2007-02-11 19:27:51 as **** along with 1 person and 1 group candypmcg Bioinformatics
  • Diverse plant and animal genetic records from Holocene and Pleistocene sediments.
    Science, Vol. 300, No. 5620. (2 May 2003), pp. 791-795.
    by E Willerslev, AJ Hansen, J Binladen, TB Brand, MT Gilbert, B Shapiro, M Bunce, C Wiuf, DA Gilichinsky, A Cooper
    posted to barcoding metagenomics permafrost by kaspermunch on 2006-11-07 15:10:59 as ** along with 1 group Bioinformatics
  • TaxI: a software tool for DNA barcoding using distance methods.
    Philos Trans R Soc Lond B Biol Sci, Vol. 360, No. 1462. (29 October 2005), pp. 1975-1980.
    by D Steinke, M Vences, W Salzburger, A Meyer
    posted to barcoding by kaspermunch on 2006-11-06 21:36:48 as *** along with 1 person and 1 group operon Bioinformatics
  • DNA barcoding: error rates based on comprehensive sampling.
    PLoS Biol, Vol. 3, No. 12. (December 2005)
    by CP Meyer, G Paulay
    posted to barcoding by kaspermunch on 2006-11-06 21:34:06 as *** along with 1 group Bioinformatics
  • A likelihood ratio test for species membership based on DNA sequence data.
    Philos Trans R Soc Lond B Biol Sci, Vol. 360, No. 1462. (29 October 2005), pp. 1969-1974.
    by MV Matz, R Nielsen
    posted to barcoding by kaspermunch on 2006-11-06 21:33:07 as *** along with 1 group Bioinformatics
  • Statistical Approaches for DNA Barcoding
    Systematic Biology, Vol. 55, No. 1. (February 2006), pp. 162-169.
    by Rasmus Nielsen, Mikhail Matz
    posted to barcoding by kaspermunch on 2006-11-06 21:31:39 as *** along with 1 group Bioinformatics
  • Application of the BAX for screening/genus Listeria polymerase chain reaction system for monitoring Listeria species in cold-smoked fish and in the smoked fish processing environment.
    J Food Prot, Vol. 63, No. 3. (March 2000), pp. 343-346.
    by DM Norton, M Mccamey, KJ Boor, M Wiedmann
    posted to no-tag by kaspermunch on 2006-11-06 21:30:58 as *** along with 1 group Bioinformatics
  • Detection of bacterial pathogens in environmental samples using DNA microarrays.
    J Microbiol Methods, Vol. 53, No. 2. (May 2003), pp. 235-243.
    by DR Call, MK Borucki, FJ Loge
    posted to environmental microarray by kaspermunch on 2006-11-06 21:27:55 as *** along with 1 group Bioinformatics
  • Development of procedures for direct extraction of Cryptosporidium DNA from water concentrates and for relief of PCR inhibitors.
    Appl Environ Microbiol, Vol. 71, No. 3. (March 2005), pp. 1135-1141.
    by J Jiang, KA Alderisio, A Singh, L Xiao
    posted to no-tag by kaspermunch on 2006-11-06 21:25:13 as *** along with 1 group Bioinformatics
  • Comparative metagenomics of microbial communities
    Science, Vol. 308, No. 5721. (Apr 2005), pp. 554-557.
    by Susannah G Tringe, Christian von Mering, Arthur Kobayashi, Asaf A Salamov, Kevin Chen, Hwai W Chang, Mircea Podar, Jay M Short, Eric J Mathur, John C Detter, Peer Bork, Philip Hugenholtz, Edward M Rubin
    posted to no-tag by kaspermunch on 2006-11-02 11:38:20 as *** along with 1 group Bioinformatics
  • Molecular barcodes for soil nematode identification
    Mol Ecol, Vol. 11, No. 4. (2002), pp. 839-850.
    by Robin Floyd, Eyualem Abebe, Artemis Papert, Mark Blaxter
    posted to no-tag by kaspermunch on 2006-11-02 10:51:04 as ** along with 1 group Bioinformatics
  • DNA barcoding: promise and pitfalls
    PLoS Biol, Vol. 2, No. 10. (2004)
    by Craig Moritz, Carla Cicero
    posted to no-tag by kaspermunch on 2006-11-02 10:51:03 as ** along with 1 group Bioinformatics
  • Environmental genome shotgun sequencing of the Sargasso Sea
    Science, Vol. 304, No. 5667. (2004), pp. 66-74.
    by Craig J Venter, Karin Remington, John F Heidelberg, Aaron L Halpern, Doug Rusch, Jonathan A Eisen, Dongying Wu, Ian Paulsen, Karen E Nelson, William Nelson, Derrick E Fouts, Samuel Levy, Anthony H Knap, Michael W Lomas, Ken Nealson, Owen White, Jeremy Peterson, Jeff Hoffman, Rachel Parsons, Holly B Tillson, Cynthia Pfannkoch, Yu H Rogers, Hamilton O Smith
    posted to no-tag by kaspermunch on 2006-11-02 10:51:03 as ** along with 1 group Bioinformatics
  • Genomic analysis of uncultured marine viral communities
    Proc Natl Acad Sci U S A, Vol. 99, No. 22. (2002), pp. 14250-14255.
    by Mya Breitbart, Peter Salamon, Bjarne Andresen, Joseph M Mahaffy, Anca M Segall, David Mead, Farooq Azam, Forest Rohwer
    posted to no-tag by kaspermunch on 2006-11-02 10:51:03 as ** along with 1 group Bioinformatics
  • Metagenomics: DNA sequencing of environmental samples
    Nat Rev Genet, Vol. 6, No. 11. (2005), pp. 805-814.
    by Susannah G Tringe, Edward M Rubin
    posted to barcoding environmental metagenomics by kaspermunch on 2006-11-02 10:51:03 as *** along with 1 group Bioinformatics
  • Testing the utility of partial COI sequences for phylogenetic estimates of gastropod relationships.
    Mol Phylogenet Evol, Vol. 29, No. 3. (December 2003), pp. 641-647.
    by EA Remigio, PD Hebert
    posted to barcoding by kaspermunch on 2006-11-02 10:46:21 as *** along with 1 group Bioinformatics
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