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kathrynmrobinson's watchlist [1000+ articles]

Recent papers matching kathrynmrobinson's watchlist criteria
  • Hybrid zones as a tool for identifying adaptive genetic variation in outbreeding forest trees: lessons from wild annual sunflowers (Helianthus spp.).
    Forest ecology and management, Vol. 197, No. 1-3. (August 2004), pp. 49-64.
    by Christian Lexer, Berthold Heinze, Ricardo Alia, Loren H H Rieseberg
    posted to no-tag by natstreet on 2008-08-19 11:43:59 as **
  • Comparative analysis of the transcriptomes of <i>Populus trichocarpa</i> and <i>Arabidopsis thaliana </i>suggests extensive evolution of gene expression regulation in angiosperms
    New Phytologist, Vol. 9999, No. 9999. (2008)
    by Tania Quesada, Zhen Li, Christopher Dervinis, Yao Li, Philip N Bocock, Gerald A Tuskan, George Casella, John, Matias Kirst
    posted to no-tag by natstreet on 2008-08-19 11:43:44 as **
  • Conserved upstream open reading frames in higher plants
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Michael Tran, Carolyn Schultz, Ute Baumann
    posted to no-tag by natstreet on 2008-08-18 10:21:52 as ** along with 1 person jmjimenez
  • Trait correlated expression combined with expression QTL analysis reveals biological pathways and candidate genes affecting water holding capacity of muscle
    BMC Genomics, Vol. 9 (31 July 2008), 367.
    by Siriluck Ponsuksili, Elisabeth Jonas, Eduard Murani, Chirawath Phatsara, Tiranun Srikanchai, Christina Walz, Manfred Schwerin, Karl Schellander, Klaus Wimmers
    posted to no-tag by natstreet on 2008-08-18 10:20:35 as ** along with 1 person barriot
  • SoyXpress: a database for exploring the soybean transcriptome
    BMC Genomics, Vol. 9 (01 August 2008), 368.
    by Kei, Martina V Stromvik
    posted to no-tag by natstreet on 2008-08-18 10:07:01 as ** along with 1 person GustavoLacerda
  • A method for detecting epistasis in genome-wide studies using case-control multi-locus association analysis
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Javier Gayan, Antonio G Perez, Fernando Bermudo, Maria E Saez, Jose L Royo, Antonio Quintas, Jose J Galan, Francisco J Moron, Reposo R Lorca, Luis M Real, Agustin Ruiz
    posted to no-tag by natstreet on 2008-08-18 10:06:02 as ** along with 1 person provero
  • New clues to organ size control in plants
    Genome Biology, Vol. 9 (29 July 2008), 226.
    by László Bögre, Zoltán Magyar, Enrique López-Juez
    posted to no-tag by natstreet on 2008-08-18 10:04:49 as **
  • Variations in sucrose and ABA concentrations are concomitant with heteroblastic leaf shape changes in a rhythmically growing species (Quercus robur).
    Tree physiology, Vol. 26, No. 2. (February 2006), pp. 229-238.
    by R Le Hir, N Leduc, E Jeannette, JD Viemont, S Pelleschi-Travier
    posted to no-tag by natstreet on 2008-07-28 09:31:14 as **
  • A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula
    Plant Methods, Vol. 4 (08 July 2008), 18.
    by Klementina Kakar, Maren Wandrey, Tomasz Czechowski, Tanja Gaertner, Wolf-Rudiger Scheible, Mark Stitt, Ivone Torres-Jerez, Yongli Xiao, Julia Redman, Hank Wu, Foo Cheung, Christopher Town, Michael Udvardi
    posted to no-tag by natstreet on 2008-07-28 07:25:05 as **
  • Identification of a cis-regulatory element by transient analysis of co-ordinately regulated genes
    Plant Methods, Vol. 4, No. 1. (2008)
    by Andrew Dare, Robert Schaffer, Kui L Wang, Andrew Allan, Roger Hellens
    posted to no-tag by natstreet on 2008-07-28 07:24:53 as ** along with 1 person kengg
  • LAMINA: a tool for rapid quantification of leaf size and shape parameters
    BMC Plant Biology, Vol. 8 (22 July 2008), 82.
    by Max Bylesjo, Vincent Segura, Raju Y Soolanayakanahally, Anne M Rae, Johan Trygg, Petter Gustafsson, Stefan Jansson, Nathaniel R Street
    posted to no-tag by natstreet on 2008-07-24 16:53:09 as ** along with 2 people mtruksa Totobox
  • Soil respiration, root biomass, and root turnover following long-term exposure of northern forests to elevated atmospheric CO<sub>2</sub> and tropospheric O<sub>3</sub>
    New Phytologist, Vol. 9999, No. 9999. (2008)
    by Kurt S Pregitzer, Andrew J Burton, John S King, Donald R Zak
    posted to no-tag by natstreet on 2008-07-24 08:01:51 as **
  • Microgenomic analysis reveals cell type-specific gene expression patterns between ray and fusiform initials within the cambial meristem of <i>Populus</i>
    New Phytologist, Vol. 9999, No. 9999. (2008)
    by Nadia Goué, Marie-Claude Lesage-Descauses, Ewa J Mellerowicz, Elisabeth Magel, Philippe Label, Björn Sundberg
    posted to no-tag by natstreet on 2008-07-24 07:31:29 as **
  • GeneXplorer: an interactive web application for microarray data visualization and analysis
    BMC Bioinformatics, Vol. 5, No. 1. (2004)
    by Christian Rees, Janos Demeter, John Matese, David Botstein, Gavin Sherlock
    posted to no-tag by natstreet on 2008-07-21 08:54:24 as **
  • High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes.
    PLoS ONE, Vol. 2 (2007)
    by N Fahlgren, MD Howell, KD Kasschau, EJ Chapman, CM Sullivan, JS Cumbie, SA Givan, TF Law, SR Grant, JL Dangl, JC Carrington
    posted to no-tag by natstreet on 2008-07-18 09:08:22 as ** along with 3 people and 1 group jmjimenez tardigrade andersbj microRNA
  • Assessing performance of orthology detection strategies applied to eukaryotic genomes.
    PLoS ONE, Vol. 2 (2007)
    by F Chen, AJ Mackey, JK Vermunt, DS Roos
    posted to no-tag by natstreet on 2008-07-18 09:06:05 as ** along with 9 people and 3 groups bpcusack cerca icases operon rvosa indigoviolet stajich cjeans winterschlaefer EisenLab FAB-lab TNT
  • Genomics and genome-wide association studies: An integrative approach to expression QTL mapping
    Genomics, Vol. In Press, Corrected Proof
    by James H Degnan, Jessica Lasky-Su, Benjamin A Raby, Mousheng Xu, Cliona Molony, Eric E Schadt, Christoph Lange
    posted to no-tag by natstreet on 2008-07-17 09:12:20 as ** along with 1 person jyuh
  • Genomewide comparative phylogenetic and molecular evolutionary analysis of tubby-like protein family in Arabidopsis, rice, and poplar.
    Genomics (9 July 2008)
    by Zefeng Yang, Yong Zhou, Xuefeng Wang, Shiliang Gu, Jianmin Yu, Guohua Liang, Changjie Yan, Chenwu Xu
    posted to no-tag by natstreet on 2008-07-17 09:10:16 as **
  • A role for gene duplication and natural variation of gene expression in the evolution of metabolism.
    PLoS ONE, Vol. 3, No. 3. (2008)
    by DJ Kliebenstein
    posted to no-tag by natstreet on 2008-07-15 14:58:59 as **
  • The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana.
    BMC Plant Biol, Vol. 4, No. 1. (1 June 2004)
    by SB Cannon, A Mitra, A Baumgarten, ND Young, G May
    posted to no-tag by natstreet on 2008-07-15 14:55:22 as ** along with 3 people zhlei arNQ dandaman
  • Seeing double: gene duplication and diversification in plant secondary metabolism
    Trends in Plant Science, Vol. 10, No. 9. (September 2005), pp. 444-449.
    by Dietrich Ober
    posted to no-tag by natstreet on 2008-07-15 14:51:04 as **
  • Birth and Rapid Subcellular Adaptation of a Hominoid-Specific CDC14 Protein
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e140.
    by Lia Rosso, Ana C Marques, Manuela Weier, Nelle Lambert, Marie-Alexandra Lambot, Pierre Vanderhaeghen, Henrik Kaessmann
    posted to no-tag by natstreet on 2008-07-15 14:49:08 as ** along with 2 people shoshin djkt
  • Direct profiling and imaging of plant metabolites in intact tissues by using colloidal graphite-assisted laser desorption ionization mass spectrometry
    The Plant Journal, Vol. 55, No. 2. (July 2008), pp. 348-360.
    by Cha, Sangwon, Zhang, Hui, Ilarslan, I Hilal, Wurtele, Eve Syrkin, Brachova, Libuse, Nikolau, J Basil, Yeung, S Edward
    posted to no-tag by natstreet on 2008-07-15 11:17:28 as **
  • Gene silencing in plants using artificial microRNAs and other small RNAs
    The Plant Journal, Vol. 53, No. 4. (February 2008), pp. 674-690.
    by Ossowski, Stephan, Schwab, Rebecca, Weigel, Detlef
    posted to no-tag by natstreet on 2008-07-15 11:10:15 as ** along with 1 person agustinarce
  • Highly Specific Gene Silencing by Artificial miRNAs in Rice
    PLoS ONE, Vol. 3, No. 3. (19 March 2008), e1829.
    by Norman Warthmann, Hao Chen, Stephan Ossowski, Detlef Weigel, Philippe Hervé
    posted to no-tag by natstreet on 2008-07-15 11:09:18 as **
  • Differential Responses of the Cultivated and Wild Species of Soybean to Dehydration Stress
    Crop Sci, Vol. 46, No. 5. (8 September 2006), pp. 2041-2046.
    by Yanyun Chen, Pengyin Chen, de Los
    posted to no-tag by natstreet on 2008-07-15 10:33:17 as **
  • At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana
    Genome Biology, Vol. 9, No. 7. (2008)
    by Sascha Laubinger, Georg Zeller, Stefan Henz, Timo Sachsenberg, Christian Widmer, Naira Naouar, Marnik Vuylsteke, Bernhard Scholkopf, Gunnar Ratsch, Detlef Weigel
    posted to no-tag by natstreet on 2008-07-15 09:33:45 as **
  • Cross-platform comparison of SYBR Green real-time PCR with TaqMan PCR, microarrays and other gene expression measurement technologies evaluated in the MicroArray Quality Control (MAQC) study
    BMC Genomics, Vol. 9 (11 July 2008), 328.
    by Emi Arikawa, Yanyang Sun, Jie Wang, Qiong Zhou, Baitang Ning, Stacey L Dial, Lei Guo, Jingping Yang
    posted to no-tag by natstreet on 2008-07-15 07:31:13 as ** along with 3 people GeeSharpMinor ChrisEvelo jyuh
  • Transcriptional profiling of the pea shoot apical meristem reveals processes underlying its function and maintenance
    BMC Plant Biology, Vol. 8 (30 June 2008), 73.
    by Chui E Wong, Prem L Bhalla, Harald Ottenhof, Mohan Singh
    posted to no-tag by natstreet on 2008-07-15 07:28:50 as **
  • Concerted gene recruitment in early plant evolution
    Genome Biology, Vol. 9 (08 July 2008), R109.
    by Jinling Huang, Peter J Gogarten
    posted to no-tag by natstreet on 2008-07-15 07:23:41 as ** along with 1 person bcondon
  • Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids
    Genome Biology, Vol. 9 (10 July 2008), R113.
    by Yong-Hwee E Loh, Lee S Katz, Meryl C Mims, Thomas D Kocher, Soojin Yi, Jeffrey T Streelman
    posted to no-tag by natstreet on 2008-07-15 07:22:09 as ** along with 2 people biomcgary Neeperando
  • High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Evandro Novaes, Derek Drost, William Farmerie, Georgios Pappas, Dario Grattapaglia, Ronald Sederoff, Matias Kirst
    posted to no-tag by natstreet on 2008-07-10 17:47:37 as ** along with 3 people neils GustavoLacerda gpappas
  • Accurate detection of aneuploidies in array CGH and gene expression microarray data
    Bioinformatics, Vol. 20, No. 18. (2004), pp. 3533-3543.
    by Chad L Myers, Maitreya J Dunham, SY Kung, Olga G Troyanskaya
    posted to popgenie-ms by natstreet on 2008-07-10 10:23:19 as **
  • Visualization-based discovery and analysis of genomic aberrations in microarray data.
    BMC Bioinformatics, Vol. 6 (2005), 146.
    by CL Myers, X Chen, OG Troyanskaya
    posted to popgenie-ms by natstreet on 2008-07-10 10:22:18 as ** along with 1 person bioguru2000
  • Calcium accumulation in the wood of short-rotation cottonwood species: effects on pulp properties
    Wood Science and Technology, Vol. 37, No. 3. (1 December 2003), pp. 321-329.
    by Simon Potter, Sandra Reath, Ashif Hussein, Wai Gee, Val Lawrence, James Drummond
    posted to family-331 by natstreet on 2008-07-09 15:17:15 as **
  • PRIMEGENS-v2: Genome-wide primer design for analyzing DNA methylation patterns of CpG islands
    Bioinformatics (25 June 2008), btn320.
    by Gyan P Srivastava, Juyuan Guo, Huidong Shi, Dong Xu
    posted to no-tag by natstreet on 2008-07-08 17:30:46 as ** along with 2 people kjglennie jyuh
  • Bioenergy from plants and the sustainable yield challenge
    New Phytologist, Vol. 179, No. 1. (July 2008), pp. 15-32.
    by Angela Karp, Ian Shield
    posted to no-tag by natstreet on 2008-07-08 11:05:49 as ** along with 1 person jwm
  • An "electronic fluorescent pictograph" browser for exploring and analyzing large-scale biological data sets.
    PLoS ONE, Vol. 2 (2007), e718.
    by D Winter, B Vinegar, H Nahal, R Ammar, GV Wilson, NJ Provart
    posted to popgenie-ms by natstreet on 2008-07-02 11:41:00 as ** along with 1 person jyuh
  • DBD: a transcription factor prediction database.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006), pp. 74-81.
    by SK Kummerfeld, SA Teichmann
    posted to popgenie-ms by natstreet on 2008-07-02 11:38:09 as ** along with 5 people and 1 group mariakmejia troels_marstrand gpalidwor nickluscombe nklee EBI-regulation
  • DBD--taxonomically broad transcription factor predictions: new content and functionality.
    Nucleic acids research, Vol. 36, No. Database issue. (January 2008), pp. 88-92.
    by D Wilson, V Charoensawan, SK Kummerfeld, SA Teichmann
    posted to popgenie-ms by natstreet on 2008-07-02 11:36:28 as **
  • VISTA : visualizing global DNA sequence alignments of arbitrary length.
    Bioinformatics (Oxford, England), Vol. 16, No. 11. (November 2000), pp. 1046-1047.
    by C Mayor, M Brudno, JR Schwartz, A Poliakov, EM Rubin, KA Frazer, LS Pachter, I Dubchak
    posted to popgenie-ms by natstreet on 2008-07-02 11:31:37 as ** along with 1 person AaronDarling
  • VISTA: computational tools for comparative genomics.
    Nucleic acids research, Vol. 32, No. Web Server issue. (1 July 2004), pp. 273-279.
    by KA Frazer, L Pachter, A Poliakov, EM Rubin, I Dubchak
    posted to popgenie-ms by natstreet on 2008-07-02 11:29:19 as ** along with 1 person and 1 group Auger Dead 60's
  • Web-based analysis of the mouse transcriptome using Genevestigator
    BMC Bioinformatics, Vol. 7 (21 June 2006), 311.
    by Oliver Laule, Matthias Hirsch-Hoffmann, Tomas Hruz, Wilhelm Gruissem, Philip Zimmermann
    posted to popgenie-ms by natstreet on 2008-07-02 11:26:08 as **
  • GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol, Vol. 136, No. 1. (September 2004), pp. 2621-2632.
    by P Zimmermann, M Hirsch-Hoffmann, L Hennig, W Gruissem
    posted to popgenie-ms by natstreet on 2008-07-02 11:25:19 as ** along with 1 person and 1 group kengg Plantandetc
  • Populus: Arabidopsis for Forestry. Do We Need a Model Tree?
    Ann Bot, Vol. 90, No. 6. (1 December 2002), pp. 681-689.
    by GAIL Taylor
    posted to popgenie-ms by natstreet on 2008-07-02 11:08:54 as **
  • FlyBase: integration and improvements to query tools.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008), pp. 588-593.
    by RJ Wilson, JL Goodman, VB Strelets
    posted to popgenie-ms by natstreet on 2008-07-02 09:21:13 as ** along with 1 person jyuh
  • Phytome: a platform for plant comparative genomics.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by S Hartmann, D Lu, J Phillips, TJ Vision
    posted to no-tag by natstreet on 2008-07-02 09:20:22 as **
  • PlantTFDB: a comprehensive plant transcription factor database.
    Nucleic acids research, Vol. 36, No. Database issue. (January 2008), pp. 966-969.
    by AY Guo, X Chen, G Gao, H Zhang, QH Zhu, XC Liu, YF Zhong, X Gu, K He, J Luo
    posted to popgenie-ms by natstreet on 2008-07-02 09:20:03 as **
  • Pfam: clans, web tools and services.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006), pp. 247-251.
    by RD Finn, J Mistry, B Schuster-Böckler, S Griffiths-Jones, V Hollich, T Lassmann, S Moxon, M Marshall, A Khanna, R Durbin, SR Eddy, EL Sonnhammer, A Bateman
    posted to popgenie-ms by natstreet on 2008-07-02 09:19:27 as ** along with 10 people Lombardo_7 phoenixzxl gbart dullhunk massivemayhem cjeans siebertm lpfernandes pablomendes antonkratz
  • The COG database: an updated version includes eukaryotes.
    BMC Bioinformatics, Vol. 4 (11 September 2003), 41.
    by RL Tatusov, ND Fedorova, JD Jackson, AR Jacobs, B Kiryutin, EV Koonin, DM Krylov, R Mazumder, SL Mekhedov, AN Nikolskaya, BS Rao, S Smirnov, AV Sverdlov, S Vasudevan, YI Wolf, JJ Yin, DA Natale
    posted to popgenie-ms by natstreet on 2008-07-02 09:16:42 as ** along with 6 people and 1 group arve indigoviolet j3xucite treangen bluto westoll EisenLab
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