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kengg's Li [28 articles]

Recent papers posted to kengg's library by the author Li. You can also see everyone's Li.
  • Genistein induces the p21WAF1/CIP1 and p16INK4a tumor suppressor genes in prostate cancer cells by epigenetic mechanisms involving active chromatin modification.
    Cancer research, Vol. 68, No. 8. (15 April 2008), pp. 2736-2744.
    by S Majid, N Kikuno, J Nelles, E Noonan, Y Tanaka, K Kawamoto, H Hirata, LC Li, H Zhao, ST Okino, RF Place, D Pookot, R Dahiya
    posted to small-molecule methylation metabolite histone flavonoid epigenetics chromatin by kengg on 2008-08-15 01:27:23 as ** along with 1 person mtagaya
  • A small molecule enhances RNA interference and promotes microRNA processing
    Nature Biotechnology, Vol. 26, No. 8. (20 July 2008), pp. 933-940.
    by Ge Shan, Yujing Li, Junliang Zhang, Wendi Li, Keith E Szulwach, Ranhui Duan, Mohammad A Faghihi, Ahmad M Khalil, Lianghua Lu, Zain Paroo, Anthony WS Chan, Zhangjie Shi, Qinghua Liu, Claes Wahlestedt, Chuan He, Peng Jin
    posted to small-rna small-molecule chemical-biology by kengg on 2008-08-13 14:12:10 as ** along with 1 person jyuh
  • Modulation of brassinosteroid-regulated gene expression by jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis.
    Proceedings of the National Academy of Sciences of the United States of America (8 May 2008)
    by Xiaofei Yu, Li Li, Lei Li, Michelle Guo, Joanne Chory, Yanhai Yin
    posted to tfs jmj chip by kengg on 2008-05-11 01:05:31 as **
  • Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    Genome Res. (7 February 2008), gr.7080508.
    by David S Johnson, Wei Li, Benjamin D Gordon, Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S Carroll, Myles Brown, Paul Flicek, Christopher M Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J Farnham, Philipp Kapranov, David A Nix, Thomas R Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland Green, Jun S Song, Scott A Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M Myers, Jason D Lieb, Shirley X Liu
    posted to bioinformatics chip-c by kengg on 2008-03-20 21:20:04 as ** along with 10 people and 2 groups gracio stajich lp2 magusina jfr djkt xiaobeizhao cabbagezs idonaldson caseybrown Berkeley Mycology BergmanLab
  • Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm
    PLoS Biology, Vol. 6, No. 2. (1 February 2008), e27.
    by Xiao-Yong Li, Stewart Macarthur, Richard Bourgon, David Nix, Daniel A Pollard, Venky N Iyer, Aaron Hechmer, Lisa Simirenko, Mark Stapleton, Cris L Hendriks, Hou C Chu, Nobuo Ogawa, William Inwood, Victor Sementchenko, Amy Beaton, Richard Weiszmann, Susan E Celniker, David W Knowles, Tom Gingeras, Terence P Speed, Michael B Eisen, Mark D Biggin
    posted to chip-chip genome-wide by kengg on 2008-02-23 02:44:12 as ** along with 5 people and 1 group isimpson brant maximilianh caseybrown emptyhb Jarman Lab
  • Salt-induced plasticity of root hair development is caused by ion disequilibrium in Arabidopsis thaliana.
    J Plant Res, Vol. 121, No. 1. (January 2008), pp. 87-96.
    by Youning Wang, Wensheng Zhang, Kexue Li, Feifei Sun, Chunyu Han, Yukun Wang, Xia Li
    posted to stress trichome by kengg on 2008-02-15 16:39:09 as **
  • AtMYB103 regulates tapetum and trichome development in Arabidopsis thaliana.
    Plant J, Vol. 35, No. 2. (July 2003), pp. 177-192.
    by T Higginson, SF Li, RW Parish
    posted to trichome by kengg on 2008-01-31 20:21:30 as **
  • Arabidopsis NAP and PIR regulate actin-based cell morphogenesis and multiple developmental processes.
    Plant Physiol, Vol. 136, No. 3. (November 2004), pp. 3616-3627.
    by Y Li, K Sorefan, G Hemmann, MW Bevan
    posted to trichome by kengg on 2008-01-31 20:00:39 as **
  • Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome
    Cell, Vol. 131, No. 7. (28 December 2007), pp. 1340-1353.
    by Julia A Chekanova, Brian D Gregory, Sergei V Reverdatto, Huaming Chen, Ravi Kumar, Tanya Hooker, Junshi Yazaki, Pinghua Li, Nikolai Skiba, Qian Peng, Jose Alonso, Vladimir Brukhin, Ueli Grossniklaus, Joseph R Ecker, Dmitry A Belostotsky
    posted to bioinformatics network by kengg on 2008-01-17 21:56:17 as **
  • Network neighborhood analysis with the multi-node topological overlap measure.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 222-231.
    by A Li, S Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:53:05 as ** along with 1 person and 1 group jeremymiller GeschwindLab
  • Coordinate Gene Regulation during Hematopoiesis Is Related to Genomic Organization
    PLoS Biology, Vol. 5, No. 11. (1 November 2007), e309.
    by Steven T Kosak, David Scalzo, Sam V Alworth, Fusheng Li, Stephanie Palmer, Tariq Enver, James S Lee, Mark Groudine
    posted to genome-wide network by kengg on 2007-11-29 15:52:32 as ** along with 2 people sebastien_vigneau oelemento
  • The impact of sequence divergence and DNA mismatch repair on homeologous recombination in Arabidopsis
    The Plant Journal, Vol. 45, No. 6. (March 2006), pp. 908-916.
    by Liangliang Li, Martine Jean, Francois Belzile
    posted to chip-chip microarray by kengg on 2007-10-19 14:28:32 as **
  • A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences.
    Bioinformatics, Vol. 21 Suppl 1 (June 2005)
    by W Li, CA Meyer, XS Liu
    posted to bioinformatics chip tfs by kengg on 2007-07-17 03:18:48 as ** along with 1 group Plantandetc
  • Microarray Analysis of Gene Expression Involved in Anther Development in rice (Oryza sativa L.)
    Plant Molecular Biology, Vol. 58, No. 5. (July 2005), pp. 721-737.
    by Zhen Wang, Yu Liang, Chijun Li, Yunyuan Xu, Lefu Lan, Dazhong Zhao, Changbin Chen, Zhihong Xu, Yongbiao Xue, Kang Chong
    posted to meiosis microarray rice by kengg on 2007-05-20 00:45:42 as ** along with 1 group Plantandetc
  • p21-activated kinase 1 is activated through the mammalian target of rapamycin/p70 S6 kinase pathway and regulates the replication of hepatitis C virus in human hepatoma cells.
    J Biol Chem, Vol. 282, No. 16. (20 April 2007), pp. 11836-11848.
    by H Ishida, K Li, M Yi, SM Lemon
    posted to hcv by kengg on 2007-05-15 18:05:49 as ** along with 1 person and 1 group jyuh Plantandetc
  • Histone acetylation affects expression of cellular patterning genes in the Arabidopsis root epidermis.
    Proc Natl Acad Sci U S A, Vol. 102, No. 40. (4 October 2005), pp. 14469-14474.
    by CR Xu, C Liu, YL Wang, LC Li, WQ Chen, ZH Xu, SN Bai
    posted to arabidopsis histone root by kengg on 2007-05-01 16:03:59 as ** along with 1 group Plantandetc
  • Microarray Blob-Defect Removal Improves Array Analysis.
    Bioinformatics (1 March 2007)
    by Jun S S Song, Kaveh Maghsoudi, Wei Li, Edward Fox, John Quackenbush, X Shirley Liu
    posted to bioinformatics chip genome-wide by kengg on 2007-03-06 22:23:39 as ** along with 5 people and 1 group jfr shigepong ghattem caseybrown waszak Plantandetc
  • Model-based analysis of tiling-arrays for ChIP-chip.
    Proc Natl Acad Sci U S A, Vol. 103, No. 33. (15 August 2006), pp. 12457-12462.
    by WE Johnson, W Li, CA Meyer, R Gottardo, JS Carroll, M Brown, XS Liu
    posted to bioinformatics chip genome-wide by kengg on 2007-02-24 14:16:45 as ** along with 5 people and 1 group bozdagd bertelsen nicholso talponer caseybrown Plantandetc
  • TM4: a free, open-source system for microarray data management and analysis.
    Biotechniques, Vol. 34, No. 2. (February 2003), pp. 374-378.
    by AI Saeed, V Sharov, J White, J Li, W Liang, N Bhagabati, J Braisted, M Klapa, T Currier, M Thiagarajan, A Sturn, M Snuffin, A Rezantsev, D Popov, A Ryltsov, E Kostukovich, I Borisovsky, Z Liu, A Vinsavich, V Trush, J Quackenbush
    posted to microarray bioinformatics by kengg on 2007-02-06 04:15:04 as ** along with 1 group Plantandetc
  • Predicting Essential Components of Signal Transduction Networks: A Dynamic Model of Guard Cell Abscisic Acid Signaling
    PLoS Biology, Vol. 4, No. 10. (1 October 2006), e312.
    by Song Li, Sarah M Assmann, Réka Albert
    posted to arabidopsis bioinformatics stomata by kengg on 2006-10-26 20:28:40 as ** along with 2 people and 1 group hannahrajasingh jmeppley Plantandetc
  • A novel MYB-related gene from Arabidopsis thaliana expressed in developing anthers.
    Plant Cell Physiol, Vol. 40, No. 3. (March 1999), pp. 343-347.
    by SF Li, T Higginson, RW Parish
    posted to arabidopsis myb tfs by kengg on 2006-10-23 23:21:01 as ** along with 1 group Plantandetc
  • Structure of Protein Phosphatase 2A Core Enzyme Bound to Tumor-Inducing Toxins
    Cell, Vol. 127, No. 2. (20 October 2006), pp. 341-353.
    by Yongna Xing, Yanhui Xu, Yu Chen, Philip D Jeffrey, Yang Chao, Zheng Lin, Zhu Li, Stefan Strack, Jeffry B Stock, Yigong Shi
    posted to small-molecule structure by kengg on 2006-10-21 14:22:37 as ** along with 1 group Plantandetc
  • The tomato homolog of CORONATINE-INSENSITIVE1 is required for the maternal control of seed maturation, jasmonate-signaled defense responses, and glandular trichome development.
    Plant Cell, Vol. 16, No. 1. (January 2004), pp. 126-143.
    by L Li, Y Zhao, BC McCaig, BA Wingerd, J Wang, ME Whalon, E Pichersky, GA Howe
    posted to ja trichome by kengg on 2006-09-22 15:55:11 as ** along with 1 group Plantandetc
  • The plant cyclin-dependent kinase inhibitor ICK1 has distinct functional domains for in vivo kinase inhibition, protein instability and nuclear localization.
    Plant J, Vol. 35, No. 4. (August 2003), pp. 476-489.
    by Y Zhou, G Li, F Brandizzi, LC Fowke, H Wang
    posted to arabidopsis cyclin by kengg on 2006-09-20 19:06:29 as ** along with 1 group Plantandetc
  • Phosphoserines on maize CENTROMERIC HISTONE H3 and histone H3 demarcate the centromere and pericentromere during chromosome segregation.
    Plant Cell, Vol. 17, No. 2. (2005), pp. 572-583.
    by X Zhang, X Li, JB Marshall, CX Zhong, RK Dawe
    posted to arabidopsis histone nucleosome by kengg on 2006-09-16 15:37:56 as ** along with 1 group Plantandetc
  • Histone acetylation affects expression of cellular patterning genes in the Arabidopsis root epidermis.
    Proc Natl Acad Sci U S A, Vol. 102, No. 40. (2005), pp. 14469-14474.
    by CR Xu, C Liu, YL Wang, LC Li, WQ Chen, ZH Xu, SN Bai
    posted to arabidopsis histone by kengg on 2006-09-16 15:37:56 as ** along with 1 group Plantandetc
  • Double Knockouts of Phospholipases Dzeta1 and Dzeta2 in Arabidopsis Affect Root Elongation during Phosphate-Limited Growth But Do Not Affect Root Hair Patterning
    Plant Physiol., Vol. 140, No. 2. (1 February 2006), pp. 761-770.
    by Maoyin Li, Chunbo Qin, Ruth Welti, Xuemin Wang
    posted to arabidopsis root trichome by kengg on 2006-09-13 17:30:36 as ** along with 1 group Plantandetc
  • Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF
    Nature, Vol. 442, No. 7098. (21 May 2006), pp. 91-95.
    by Haitao Li, Serge Ilin, Wooikoon Wang, Elizabeth M Duncan, Joanna Wysocka, David C Allis, Dinshaw J Patel
    posted to histone nucleosome phd by kengg on 2006-07-31 14:54:01 as ** along with 1 person and 1 group zhlei Plantandetc
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