kengg's tfs [113 articles] Export

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	Distinct relationships between GLABRA2 and single-repeat R3 MYB transcription factors in the regulation of trichome and root hair patterning in Arabidopsis. [My Copy] The New phytologist (29 October 2009) by Shucai Wang, Christa Barron, John Schiefelbein, Jin-Gui G. Chen posted to trichome tfs by kengg on 2009-11-03 19:24:54 as
	The MYB23 Gene Provides a Positive Feedback Loop for Cell Fate Specification in the Arabidopsis Root Epidermis [My Copy] Plant Cell, Vol. 21, No. 4. (1 April 2009), pp. 1080-1094. by Yeon H. Kang, Victor Kirik, Martin Hulskamp, et al.Kyoung H. Nam, Katherine Hagely, Myeong M. Lee, John Schiefelbein posted to arabidopsis myb root tfs by kengg on 2009-05-24 20:50:01 as
	The HD-ZIP IV transcription factor OCL4 is necessary for trichome patterning and anther development in maize. [My Copy] The Plant journal : for cell and molecular biology (12 May 2009) by Vanessa Vernoud, Guillaume Laigle, Frédérique Rozier, Robert B B. Meeley, Pascual Perez, Peter M M. Rogowsky posted to homeodomain maize tfs trichome by kengg on 2009-05-24 13:06:48 as
	A Systems Approach Reveals Regulatory Circuitry for <italic>Arabidopsis</italic> Trichome Initiation by the GL3 and GL1 Selectors [My Copy] PLoS Genet, Vol. 5, No. 2. (27 February 2009), e1000396. by Kengo Morohashi, Erich Grotewold posted to chip-chip coexpression tfs by kengg on 2009-03-02 17:00:42 as
	Genome-Wide Analysis of Genes Targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during Seed Germination in Arabidopsis. [My Copy] The Plant cell (24 February 2009) by Eunkyoo Oh, Hyojin Kang, Shinjiro Yamaguchi, et al.Jeongmoo Park, Doheon Lee, Yuji Kamiya, Giltsu Choi posted to chip-chip light tfs by kengg on 2009-03-02 04:25:44 as along with 1 person mojopin85
	AtMYB12 regulates caffeoyl quinic acid and flavonol synthesis in tomato: expression in fruit results in very high levels of both types of polyphenol [My Copy] The Plant Journal, Vol. 56, No. 2. (October 2008), pp. 316-326. by Luo, Jie, Butelli, et al. Eugenio, Hill, Lionel, Parr, Adrian, Niggeweg, Ricarda, Bailey, Paul, Weisshaar, Bernd, Martin, Cathie posted to flavonoid myb tfs tomato by kengg on 2008-11-17 20:31:20 as
	Functional specialization of the TRANSPARENT TESTA GLABRA1 network allows differential hormonal control of laminal and marginal trichome initiation in Arabidopsis rosette leaves. [My Copy] Plant physiology (10 September 2008) by Lies Maes, Dirk Inze, Alain Goossens posted to tfs trichome by kengg on 2008-11-07 15:46:34 as
	Comprehensive identification of Arabidopsis thaliana MYB transcription factors interacting with R/B-like BHLH proteins. [My Copy] The Plant journal : for cell and molecular biology, Vol. 40, No. 1. (October 2004), pp. 22-34. by I. M. Zimmermann, M. A. Heim, B. Weisshaar, J. F. Uhrig posted to bhlh myb tfs by kengg on 2008-10-15 04:44:16 as
	PAT1, a new member of the GRAS family, is involved in phytochrome A signal transduction. [My Copy] Genes & development, Vol. 14, No. 10. (15 May 2000), pp. 1269-1278. by C. Bolle, C. Koncz, N. H. Chua posted to gras light tfs by kengg on 2008-10-01 14:49:27 as
	Shoot and inflorescence branching. [My Copy] Current opinion in plant biology, Vol. 8, No. 5. (October 2005), pp. 506-511. by G. Schmitz, K. Theres posted to arabidopsis gras leaf tfs by kengg on 2008-10-01 04:18:12 as
	SAD2 in Arabidopsis Functions in Trichome Initiation through Mediating GL3 Function and Regulating GL1, TTG1 and GL2 Expression [My Copy] Journal of Integrative Plant Biology, Vol. 50, No. 7. (July 2008), pp. 906-917. by Gao, Ying, Gong, et al. Ximing, Cao, Wanhong, Zhao, Jinfeng, Fu, Liqin, Wang, Xuechen, Schumaker, S. Karen, Guo, Yan posted to tfs traffic trichome by kengg on 2008-08-24 18:45:21 as
	Promoter of a cotton fibre MYB gene functional in trichomes of Arabidopsis and glandular trichomes of tobacco. [My Copy] Journal of experimental botany (18 August 2008) by Xiao-Xia X. Shangguan, Bing Xu, Zong-Xia X. Yu, Ling-Jian J. Wang, Xiao-Ya Y. Chen posted to gl1 gl3 hint tfs tobacco trichome by kengg on 2008-08-21 04:52:25 as
	The Arabidopsis Athb-10 (GLABRA2) is an HD-Zip protein required for regulation of root hair development. [My Copy] The Plant journal : for cell and molecular biology, Vol. 10, No. 3. (September 1996), pp. 393-402. by M. Di Cristina, G. Sessa, L. Dolan, et al.P. Linstead, S. Baima, I. Ruberti, G. Morelli posted to root tfs trichome by kengg on 2008-08-19 21:41:50 as
	The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. [My Copy] Planta, Vol. 227, No. 3. (February 2008), pp. 707-715. by S. Pattanaik, C. H. Xie, L. Yuan posted to bhlh maize myc r tfs by kengg on 2008-08-15 01:36:35 as
	Core transcriptional regulatory circuitry in human embryonic stem cells. [My Copy] Cell, Vol. 122, No. 6. (23 September 2005), pp. 947-956. by Laurie A. Boyer, Tong Ihn I. Lee, Megan F. Cole, et al.Sarah E. Johnstone, Stuart S. Levine, Jacob P. Zucker, Matthew G. Guenther, Roshan M. Kumar, Heather L. Murray, Richard G. Jenner, David K. Gifford, Douglas A. Melton, Rudolf Jaenisch, Richard A. Young posted to chip es genome-wide human network tfs by kengg on 2008-08-06 14:06:57 as along with 13 people rklancer kentsis tardigrade balicea tabu cconboy koller Stew faisalm mikaelhuss tdmckee brant dquest
	Variation in expression and protein localization of the PIN family of auxin efflux facilitator proteins in flavonoid mutants with altered auxin transport in Arabidopsis thaliana. [My Copy] The Plant cell, Vol. 16, No. 7. (July 2004), pp. 1898-1911. by W. A. Peer, A. Bandyopadhyay, J. J. Blakeslee, et al.S. N. Makam, R. J. Chen, P. H. Masson, A. S. Murphy posted to auxin flavonoid root tfs by kengg on 2008-08-05 20:56:51 as
	The evolution of plant regulatory networks: what Arabidopsis cannot say for itself. [My Copy] Current opinion in plant biology, Vol. 10, No. 6. (December 2007), pp. 653-659. by J. Nardmann, W. Werr posted to arabidopsis homeodomain maize network review tfs by kengg on 2008-07-22 21:25:08 as along with 2 people carlk Borelli
	Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. [My Copy] Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117. by Xi Chen, Han Xu, Ping Yuan, et al.Fang Fang, Mikael Huss, Vinsensius B. Vega, Eleanor Wong, Yuriy L. Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han H. Loh, Hock Chuan C. Yeo, Zhen Xuan X. Yeo, Vipin Narang, Kunde Ramamoorthy R. Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin K. Sung, Neil D. Clarke, Chia-Lin L. Wei, Huck-Hui H. Ng posted to bioinformatics chip chip-seq genome-wide high-throughput network tfs by kengg on 2008-07-14 16:09:02 as along with 12 people and 2 groups isimpson shikin sebastien_vigneau cassj rschulz FJ fhalbrit djkt jjray inesdesantiago caseybrown gdb Epigenetics CTCF
	Identification of a cis-regulatory element by transient analysis of co-ordinately regulated genes [My Copy] Plant Methods, Vol. 4, No. 1. (2008) by Andrew Dare, Robert Schaffer, Kui L. Wang, Andrew Allan, Roger Hellens posted to arabidopsis bioinformatics flavonoid microarray myb tfs by kengg on 2008-07-07 01:35:25 as along with 1 person natstreet
	Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks. [My Copy] Nature genetics, Vol. 40, No. 7. (15 July 2008), pp. 854-861. by Jun Zhu, Bin Zhang, Erin N. Smith, et al.Becky Drees, Rachel B. Brem, Leonid Kruglyak, Roger E. Bumgarner, Eric E. Schadt posted to coexpression network systems tfs yeast by kengg on 2008-06-19 21:54:39 as along with 19 people and 1 group JoeBanks arider1 megraw TRHvidsten siebert ggallone jo_davies suteedee burak realzhang maralena ptrobajo tmmurali guhjy roys marck caseybrown djkt srp33 Jarman Lab
	Two-Dimensional Patterning by a Trapping/Depletion Mechanism: The Role of TTG1 and GL3 in Arabidopsis Trichome Formation [My Copy] PLoS Biology, Vol. 6, No. 6. (1 June 2008), e141. by Daniel Bouyer, Florian Geier, Friedrich Kragler, et al.Arp Schnittger, Martina Pesch, Katja Wester, Rachappa Balkunde, Jens Timmer, Christian Fleck, Martin Hülskamp posted to tfs trichome by kengg on 2008-06-14 02:07:09 as
	Transcription factors for predictive plant metabolic engineering: are we there yet? [My Copy] Current opinion in biotechnology, Vol. 19, No. 2. (April 2008), pp. 138-144. by E. Grotewold posted to metabolite network review tfs by kengg on 2008-06-08 20:30:57 as
	FKF1 F-box protein mediates cyclic degradation of a repressor of CONSTANS in Arabidopsis. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5732. (8 July 2005), pp. 293-297. by T. Imaizumi, T. F. Schultz, F. G. Harmon, L. A. Ho, S. A. Kay posted to circadian tfs by kengg on 2008-05-16 03:44:23 as
	TCP transcription factors control the morphology of shoot lateral organs via negative regulation of the expression of boundary-specific genes in Arabidopsis. [My Copy] The Plant cell, Vol. 19, No. 2. (1 February 2007), pp. 473-484. by Tomotsugu Koyama, Masahiko Furutani, Masao Tasaka, Masaru Ohme-Takagi posted to tfs by kengg on 2008-05-16 03:38:56 as along with 3 people natstreet danish_punter bjbecerra
	KNOX lost the OX: the Arabidopsis KNATM gene defines a novel class of KNOX transcriptional regulators missing the homeodomain. [My Copy] The Plant cell, Vol. 20, No. 4. (8 April 2008), pp. 875-887. by Enrico Magnani, Sarah Hake posted to tfs by kengg on 2008-05-14 20:08:33 as along with 1 person and 1 group p2vani Botany and Plant Sciences
	Modulation of brassinosteroid-regulated gene expression by jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 21. (27 May 2008), pp. 7618-7623. by Xiaofei Yu, Li Li, Lei Li, Michelle Guo, Joanne Chory, Yanhai Yin posted to chip jmj tfs by kengg on 2008-05-11 01:05:31 as along with 1 person udivi
	Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Yuji Zhang, Jianhua Xuan, Benildo, Robert Clarke, Habtom Ressom posted to bioinformatics coexpression network tfs by kengg on 2008-04-24 01:35:28 as along with 7 people natstreet druvus heliopais dquest bootsy bertelsen guhjy
	Engineering polydactyl zinc-finger transcription factors. [My Copy] Nature biotechnology, Vol. 20, No. 2. (February 2002), pp. 135-141. by R. R. Beerli, C. F. Barbas posted to hint tfs by kengg on 2008-04-05 01:23:05 as
	On the relation between promoter divergence and gene expression evolution [My Copy] Molecular Systems Biology, Vol. 4 (15 January 2008) by Itay Tirosh, Adina Weinberger, Dana Bezalel, Mark Kaganovich, Naama Barkai posted to bioinformatics hint network tfs by kengg on 2008-03-07 19:20:12 as along with 10 people and 2 groups daveGerrard emptyhb balicea zwang biomcgary cisevol caseybrown renatomilani mclarenv Jporci cis-regulatory-evolution BergmanLab
	DISTORTED3/SCAR2 is a putative arabidopsis WAVE complex subunit that activates the Arp2/3 complex and is required for epidermal morphogenesis. [My Copy] Plant Cell, Vol. 17, No. 2. (February 2005), pp. 502-524. by D. Basu, J. Le, S. e. l. -. D. El-Essal, et al.S. Huang, C. Zhang, E. L. Mallery, G. Koliantz, C. J. Staiger, D. B. Szymanski posted to arabidopsis chip-chip tfs trichome by kengg on 2008-01-30 21:01:28 as
	Over-expression of the Arabidopsis AtMYB41 gene alters cell expansion and leaf surface permeability [My Copy] The Plant Journal, Vol. 53, No. 1. (January 2008), pp. 53-64. by Cominelli, Eleonora, Sala, et al. Tea, Calvi, Daniele, Gusmaroli, Giuliana, Tonelli, Chiara posted to leaf myb stress tfs by kengg on 2008-01-20 03:35:28 as
	Programming gene expression with combinatorial promoters. [My Copy] Molecular systems biology, Vol. 3 (13 November 2007) by Robert Sidney S. Cox, Michael G. Surette, Michael B. Elowitz posted to bioinformatics network systems tfs by kengg on 2008-01-20 01:27:55 as along with 16 people and 3 groups balabu Synthetic_Biology_Literature Retchless tmmurali austin dpollard balicea dbikard margaritis lusk cjeans zwang discreteonyxorb cabbagezs Ema tresch TranscriptionalRegulationWithThermodynamicModels EisenLab SynBioSys
	Dynamic Changes in Subgraph Preference Profiles of Crucial Transcription Factors [My Copy] PLoS Comput Biol, Vol. 2, No. 5. (12 May 2006), e47. by Zhihua Zhang, Changning Liu, Geir Skogerbø, et al.Xiaopeng Zhu, Hongchao Lu, Lan Chen, Baochen Shi, Yong Zhang, Jie Wang, Tao Wu, Runsheng Chen posted to bioinformatics network tfs by kengg on 2007-12-25 03:42:43 as along with 3 people leemond31 ccots aswin
	Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings. [My Copy] Plant J (23 November 2007) by Antonio Gonzalez, Mingzhe Zhao, John M M. Leavitt, Alan M M. Lloyd posted to bhlh flavonoid metabolite myb tfs by kengg on 2007-12-15 03:03:33 as
	Modulation of phospholipid signaling by GLABRA2 in root-hair pattern formation. [My Copy] Science, Vol. 300, No. 5624. (30 May 2003), pp. 1427-1430. by Y. Ohashi, A. Oka, R. Rodrigues-Pousada, et al.M. Possenti, I. Ruberti, G. Morelli, T. Aoyama posted to network root tfs trichome by kengg on 2007-12-06 15:03:33 as
	Nutrient depletion as a key factor for manipulating gene expression and product formation in different branches of the flavonoid pathway. [My Copy] Plant Cell Environ (21 November 2007) by Cathrine Lillo, Unni S S. Lea, Peter Ruoff posted to bhlh flavonoid metabolite review tfs by kengg on 2007-11-26 14:43:07 as
	Embryonic control of epidermal cell patterning in the root and hypocotyl of Arabidopsis [My Copy] Development, Vol. 128, No. 19. (1 October 2001), pp. 3697-3705. by Yan Lin, John Schiefelbein posted to root tfs trichome by kengg on 2007-11-01 18:26:43 as
	The basic helix loop helix domain of maize R links transcriptional regulation and histone modifications by recruitment of an EMSY-related factor. [My Copy] Proc Natl Acad Sci U S A (15 October 2007) by J Marcela M. Hernandez, Antje Feller, Kengo Morohashi, Kenneth Frame, Erich Grotewold posted to bhlh chip flavonoid maize tfs by kengg on 2007-10-23 21:35:05 as
	Participation of the Arabidopsis bHLH Factor GL3 in Trichome Initiation Regulatory Events. [My Copy] Plant Physiol (20 September 2007) by Kengo Morohashi, Mingzhe Zhao, Manli Yang, et al.Betsy Read, Alan Lloyd, Rebecca Lamb, Erich Grotewold posted to bhlh chip network tfs trichome by kengg on 2007-10-23 21:33:52 as
	Arabidopsis TRANSPARENT TESTA GLABRA2 Is Directly Regulated by R2R3 MYB Transcription Factors and Is Involved in Regulation of GLABRA2 Transcription in Epidermal Differentiation. [My Copy] Plant Cell (31 August 2007) by Tetsuya Ishida, Sayoko Hattori, Ryosuke Sano, et al.Kayoko Inoue, Yumiko Shirano, Hiroaki Hayashi, Daisuke Shibata, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Kiyotaka Okada, Takuji Wada posted to bhlh root tfs trichome by kengg on 2007-09-25 20:28:19 as along with 1 person grimplet
	Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling [My Copy] The Plant Journal, Vol. 50, No. 4. (May 2007), pp. 660-677. by Stracke, Ralf, Ishihara, et al. Hirofumi, Huep, Gunnar, Barsch, Aiko, Mehrtens, Frank, Niehaus, Karsten, Weisshaar, Bernd posted to arabidopsis flavonoid myb tfs by kengg on 2007-08-02 21:41:20 as along with 1 person and 1 group tux2000 Plantandetc
	MYC2 Differentially Modulates Diverse Jasmonate-Dependent Functions in Arabidopsis. [My Copy] Plant Cell (6 July 2007) by Bruno Dombrecht, Gang Ping P. Xue, Susan J J. Sprague, et al.John A A. Kirkegaard, John J J. Ross, James B B. Reid, Gary P P. Fitt, Nasser Sewelam, Peer M M. Schenk, John M M. Manners, Kemal Kazan posted to arabidopsis bhlh tfs by kengg on 2007-07-31 14:04:37 as along with 1 person and 1 group bjbecerra Plantandetc
	Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches. [My Copy] Genome Res, Vol. 17, No. 6. (June 2007), pp. 807-817. by V. X. Jin, H. O'geen, S. Iyengar, R. Green, P. J. Farnham posted to bioinformatics genome-wide tfs by kengg on 2007-07-28 10:19:54 as along with 3 people and 1 group cjeans ghattem kmdaily Plantandetc
	Arabidopsis Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes [My Copy] Science, Vol. 290, No. 5499. (15 December 2000), pp. 2105-2110. by J. L. Riechmann, J. Heard, G. Martin, et al.L. Reuber, -Z, Jiang, J. Keddie, L. Adam, O. Pineda, O. J. Ratcliffe, R. R. Samaha, R. Creelman, M. Pilgrim, P. Broun, J. Z. Zhang, D. Ghandehari, B. K. Sherman, -L posted to arabidopsis genome-wide network rna tfs by kengg on 2007-07-24 21:00:56 as along with 6 people and 2 groups mlog megraw tny nickluscombe Hummel hplatero EBI-regulation Plantandetc
	A core transcriptional network for early mesoderm development in Drosophila melanogaster [My Copy] Genes & Development, Vol. 21, No. 4. (15 February 2007), pp. 436-449. by Thomas Sandmann, Charles Girardot, Marc Brehme, Waraporn Tongprasit, Viktor Stolc, Eileen E. M. Furlong posted to chip-chip drosophila network tfs by kengg on 2007-07-20 03:09:55 as along with 6 people and 3 groups lp2 daveGerrard brant dpollard gsrats roys BergmanLab EisenLab Plantandetc
	Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function. [My Copy] PLoS Comput Biol, Vol. 3, No. 4. (6 April 2007) by Yili Chen, Thomas W W. Blackwell, Ji Chen, Jing Gao, Angel W W. Lee, David J J. States posted to bioinformatics chip network tfs by kengg on 2007-07-20 03:07:26 as along with 1 person and 2 groups zwang Bioinformatics Plantandetc
	Genome-wide analysis of menin binding provides insights into MEN1 tumorigenesis. [My Copy] PLoS Genet, Vol. 2, No. 4. (April 2006) by P. C. Scacheri, S. Davis, D. T. Odom, et al.G. E. Crawford, S. Perkins, M. J. Halawi, S. K. Agarwal, S. J. Marx, A. M. Spiegel, P. S. Meltzer, F. S. Collins posted to chip genome-wide tfs by kengg on 2007-07-18 09:10:08 as along with 1 group Plantandetc
	Meta-analysis based on control of false discovery rate: combining yeast ChIP-chip datasets. [My Copy] Bioinformatics, Vol. 22, No. 20. (15 October 2006), pp. 2516-2522. by S. Pyne, B. Futcher, S. Skiena posted to bioinformatics chip tfs by kengg on 2007-07-18 03:10:36 as along with 1 person and 1 group jfr Plantandetc
	A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences. [My Copy] Bioinformatics, Vol. 21 Suppl 1 (June 2005) by W. Li, C. A. Meyer, X. S. Liu posted to bioinformatics chip tfs by kengg on 2007-07-17 03:18:48 as along with 1 group Plantandetc
	Integrating quantitative information from ChIP-chip experiments into motif finding. [My Copy] Biostatistics (28 May 2007) by Heejung Shim, Sündüz Keles posted to bioinformatics chip tfs by kengg on 2007-07-17 03:14:25 as along with 5 people and 1 group sebastien_vigneau bryankr kt nklee maximilianh Plantandetc

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arabidopsis	189
trichome	159
tfs	113
bioinformatics	107
review	96
chip	67
network	65
small-molecule	65
genome-wide	60
metabolite	55
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hcv	49
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microarray	39
chromatin	37
coexpression	31
nucleosome	31
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hint	29
bhlh	25
meiosis	25
kinase	23
chip-chip	21
helicase	20
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systems	17
circadian	17
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maize	16
rice	15
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lily	14
hormone	13
rna	11
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jmj	10
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chemical-biology	9
agris	9
acetylation	8
statics	8
small-rna	8
comparative_genomics	8
tobacco	7
auxin	7
riboswitch	7
ankyrin	7
polymerase	6
method	6
recombination	6
anther	6
stress	6
homeodomain	6
csa	5
ja	5
gras	5
tbp	4
virus	4
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aptamer	4
drosophila	4
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tomato	1
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model	1

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