kentsis's folding [24 articles] Export

Recent papers added to kentsis's library classified by the tag folding. You can also see everyone's folding.

	High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (9 October 2009), e1000528. by Noriaki Okimoto, Noriyuki Futatsugi, Hideyoshi Fuji, et al.Atsushi Suenaga, Gentaro Morimoto, Ryoko Yanai, Yousuke Ohno, Tetsu Narumi, Makoto Taiji posted to microphysics folding design by kentsis on 2009-10-11 14:30:18 as along with 5 people and 1 group ibuch klexa skywalkerus02 reyez barry McCammon
	ATP and MO25α Regulate the Conformational State of the STRADα Pseudokinase and Activation of the LKB1 Tumour Suppressor [My Copy] PLoS Biol, Vol. 7, No. 6. (9 June 2009), e1000126. by Elton Zeqiraj, Beatrice M. Filippi, Simon Goldie, et al.Iva Navratilova, Jérôme Boudeau, Maria Deak, Dario R. Alessi, Daan M. van Aalten posted to design folding microphysics by kentsis on 2009-06-11 00:46:36 as
	Generalized ensemble methods for de novo structure prediction [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1415-1420. by Alena Shmygelska, Michael Levitt posted to design folding mesophysics by kentsis on 2009-02-07 12:58:35 as along with 5 people rabio apaydin nurban hmk amishp
	Preserving the Boltzmann ensemble in replica-exchange molecular dynamics. [My Copy] The Journal of chemical physics, Vol. 129, No. 16. (28 October 2008) by B. Cooke, S. C. Schmidler posted to design folding microphysics by kentsis on 2009-01-25 22:04:25 as
	Simulated Mutagenesis of the Hypervariable Loops of a Llama VHH Domain for the Recovery of Canonical Conformations. [My Copy] The journal of physical chemistry. B (8 January 2009) by Camilo Velez-Vega, Michael K K. Fenwick, Fernando A A. Escobedo posted to design folding microphysics by kentsis on 2009-01-25 22:03:31 as
	NMR structures of two designed proteins with high sequence identity but different fold and function [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 38. (23 September 2008), pp. 14412-14417. by Yanan He, Yihong Chen, Patrick Alexander, Philip N. Bryan, John Orban posted to design folding by kentsis on 2008-09-28 12:59:48 as along with 8 people bqcao diod qluo martainn wilbur markchen zwang reyez
	Building Markov state models along pathways to determine free energies and rates of transitions. [My Copy] The Journal of chemical physics, Vol. 129, No. 6. (14 August 2008) by A. C. Pan, B. Roux posted to design folding mesophysics by kentsis on 2008-09-21 21:20:56 as
	Crowded, cell-like environment induces shape changes in aspherical protein [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 33. (2008), pp. 11754-11759. by Dirar Homouz, Michael Perham, Antonios Samiotakis, Margaret S. Cheung, Pernilla Wittung-Stafshede posted to design folding mesophysics microphysics molbio by kentsis on 2008-08-22 10:52:07 as along with 3 people alexknight ras TOchi
	The pathogen protein EspFU hijacks actin polymerization using mimicry and multivalency [My Copy] Nature (23 July 2008) by Nathan A. Sallee, Gonzalo M. Rivera, John E. Dueber, et al.Dan Vasilescu, Dyche R. Mullins, Bruce J. Mayer, Wendell A. Lim posted to design folding microphysics molbio by kentsis on 2008-08-22 10:49:30 as along with 1 person noraziz
	Forced unfolding of proteins within cells. [My Copy] Science, Vol. 317, No. 5838. (3 August 2007), pp. 663-666. by C. P. Johnson, H. Y. Tang, C. Carag, D. W. Speicher, D. E. Discher posted to folding by kentsis on 2007-08-21 13:13:36 as along with 2 people grahamc Jporci
	Rational design of inhibitors that bind to inactive kinase conformations. [My Copy] Nat Chem Biol, Vol. 2, No. 7. (July 2006), pp. 358-364. by Y. Liu, N. S. Gray posted to folding medicine microphysics by kentsis on 2007-06-10 20:41:47 as along with 2 people GermanErlenkamp tjimenez
	A general strategy for creating "inactive-conformation" abl inhibitors. [My Copy] Chem Biol, Vol. 13, No. 7. (July 2006), pp. 779-786. by B. Okram, A. Nagle, F. J. Adrián, et al.C. Lee, P. Ren, X. Wang, T. Sim, Y. Xie, X. Wang, G. Xia, G. Spraggon, M. Warmuth, Y. Liu, N. S. Gray posted to folding medicine microphysics by kentsis on 2007-06-10 20:41:17 as
	Characterization of protein-ligand interaction sites using experimental and computational methods. [My Copy] Current opinion in drug discovery & development, Vol. 9, No. 3. (May 2006), pp. 354-362. by Sandor Vajda, Frank Guarnieri posted to folding microphysics by kentsis on 2007-03-19 11:53:13 as along with 3 people and 1 group ubcg08l nickolay caporaso biomedical-nlp
	High-resolution Structural and Thermodynamic Analysis of Extreme Stabilization of Human Procarboxypeptidase by Computational Protein Design. [My Copy] J Mol Biol (2 December 2006) by Gautam Dantas, Colin Corrent, Steve L L. Reichow, et al.James J J. Havranek, Ziad M M. Eletr, Nancy G G. Isern, Brian Kuhlman, Gabriele Varani, Ethan A A. Merritt, David Baker posted to folding microphysics by kentsis on 2007-01-03 12:16:11 as along with 1 person jwm
	De novo ligand design to an ensemble of protein structures. [My Copy] Proteins (22 March 2006) by N P P. Todorov, C L L. Buenemann, I L L. Alberts posted to folding microphysics by kentsis on 2006-03-31 15:30:04 as
	The mesoscopic dynamics of thermodynamic systems [My Copy] (28 Nov 2005) by D. Reguera, J. M. Rubi, J. M. G. Vilar posted to folding mesophysics molbio by kentsis on 2006-03-25 15:33:29 as
	A grammatical theory for the conformational changes of simple helix bundles. [My Copy] J Comput Biol, Vol. 13, No. 1. (b 2006), pp. 21-42. by D. Chiang, A. K. Joshi, K. A. Dill posted to folding microphysics by kentsis on 2006-03-13 19:15:31 as
	Comment on: "Energy landscape of a small peptide revealed by dihedral angle principal component analysis" [My Copy] Proteins (2 February 2006) by Konrad Hinsen posted to folding mesophysics by kentsis on 2006-03-05 19:02:18 as along with 1 person Diego_Prada
	The N-terminal end of the catalytic domain of SRC kinase hck is a conformational switch implicated in long-range allosteric regulation. [My Copy] Structure (Camb), Vol. 13, No. 11. (November 2005), pp. 1715-1723. by N. K. Banavali, B. Roux posted to folding microphysics by kentsis on 2005-11-09 12:33:26 as along with 1 person allmensch
	The biochemical architecture of an ancient adaptive landscape. [My Copy] Science, Vol. 310, No. 5747. (21 October 2005), pp. 499-501. by M. Lunzer, S. P. Miller, R. Felsheim, A. M. Dean posted to folding microphysics molbio by kentsis on 2005-10-22 15:14:16 as along with 2 people rklancer christiw
	Are proteins made from a limited parts list? [My Copy] Trends Biochem Sci, Vol. 30, No. 2. (February 2005), pp. 73-80. by N. C. Fitzkee, P. J. Fleming, H. Gong, N. Panasik, T. O. Street, G. D. Rose posted to folding by kentsis on 2005-02-25 15:31:01 as along with 2 people and 2 groups owarburg marcius BioinfoCIPF SGU-CIPF
	Local secondary structure content predicts folding rates for simple, two-state proteins. [My Copy] J Mol Biol, Vol. 327, No. 5. (11 April 2003), pp. 1149-1154. by H. Gong, D. G. Isom, R. Srinivasan, G. D. Rose posted to folding by kentsis on 2005-02-24 20:58:36 as
	Contact order, transition state placement and the refolding rates of single domain proteins. [My Copy] J Mol Biol, Vol. 277, No. 4. (10 April 1998), pp. 985-994. by K. W. Plaxco, K. T. Simons, D. Baker posted to folding by kentsis on 2005-02-24 20:58:13 as along with 2 people and 2 groups ana aalibes structural_bioinformatics Bioinformatics
	Contact order revisited: influence of protein size on the folding rate. [My Copy] Protein Sci, Vol. 12, No. 9. (September 2003), pp. 2057-2062. by D. N. Ivankov, S. O. Garbuzynskiy, E. Alm, K. W. Plaxco, D. Baker, A. V. Finkelstein posted to folding by kentsis on 2005-02-24 20:55:38 as along with 3 people and 2 groups ana choonpeng RamuAnandakrishnan structural_bioinformatics Bioinformatics