kentsis's watchlist [at least 200 articles] Export

Recent papers matching kentsis's watchlist criteria

	Similarity metrics for ligands reflecting the similarity of the target proteins. [My Copy] J Chem Inf Comput Sci, Vol. 43, No. 2. (r 2003), pp. 391-405. by A. Schuffenhauer, P. Floersheim, P. Acklin, E. Jacoby posted to chemogenomics similarity by snuppepuppan on 2006-07-04 10:43:34 as along with 1 person kuhn
	Atherosclerotic plaque macrophage transcriptional regulators are expressed in blood and modulated by tristetraprolin. [My Copy] Circ Res, Vol. 98, No. 10. (26 May 2006), pp. 1282-1289. by W. D. Patino, J. G. Kang, S. Matoba, O. Y. Mian, B. R. Gochuico, P. M. Hwang posted to atherosclerosis atherosclerosisgenes networks transcription by snuppepuppan on 2006-07-03 14:28:32 as
	Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes. [My Copy] American journal of human genetics, Vol. 78, No. 6. (June 2006), pp. 1011-1025. by L. Franke, H. van Bakel, L. Fokkens, E. D. de Jong, M. Egmont-Petersen, C. Wijmenga posted to findingtargets human networks by snuppepuppan on 2006-07-03 12:25:26 as along with 10 people and 1 group eesruiz saket agonzale jfr guhjy lfriedl tabu samal mmt raiyar kdl
	Integration of text- and data-mining using ontologies successfully selects disease gene candidates [My Copy] Nucl. Acids Res., Vol. 33, No. 5. (14 March 2005), pp. 1544-1552. by Nicki Tiffin, Janet F. Kelso, Alan R. Powell, Hong Pan, Vladimir B. Bajic, Winston A. Hide posted to disease findingtargets by snuppepuppan on 2006-07-03 12:25:15 as along with 3 people carelcad samal craigtalbert
	Use of gene networks from full genome microarray libraries to identify functionally relevant drug-affected genes and gene regulation cascades. [My Copy] DNA Res, Vol. 10, No. 1. (28 February 2003), pp. 19-25. by C. J. Savoie, S. Aburatani, S. Watanabe, et al.Y. Eguchi, S. Muta, S. Imoto, S. Miyano, S. Kuhara, K. Tashiro posted to drugdevelopment findingtargets networks by snuppepuppan on 2006-06-22 12:58:17 as
	A bottom-up approach to gene regulation. [My Copy] Nature, Vol. 439, No. 7078. (16 February 2006), pp. 856-860. by Nicholas J. Guido, Xiao Wang, David Adalsteinsson, et al.David McMillen, Jeff Hasty, Charles R. Cantor, Timothy C. Elston, J. J. Collins posted to networks transcription by snuppepuppan on 2006-06-21 10:31:26 as along with 18 people and 2 groups genocad bertelsen Scis0000002 raik rklancer guhjy okarsligil bayesian balicea samal madhadron balabu johncumbers mmt proulx dbikard nklee tmmurali Bioinformatics SynBioSys
	Extraction of regulatory gene/protein networks from Medline [My Copy] Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 645-650. by Jasmin Saric, Lars J. Jensen, Isabel Rojas, Peer Bork posted to networks textmining by snuppepuppan on 2006-06-19 15:41:49 as along with 4 people and 1 group kaihong lflorez yas zlu T_lab
	Combination of text-mining algorithms increases the performance. [My Copy] Bioinformatics (9 June 2006) by Rainer Malik, Lude Franke, Arno Siebes posted to textmining by snuppepuppan on 2006-06-19 13:19:26 as along with 9 people and 5 groups bqchinh cisevol irenas guhjy yas fisherp caporaso markymaypo soramame_0518 BergmanLab dbk-lab T_lab biomedical-nlp ARTFL
	Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae [My Copy] Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11. by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, et al.Bobby J. Breitkreutz, Gary Hon, Chad Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga Troyanskya, Trey Ideker, Kara Dolinski, Nizar Batada, Mike Tyers posted to networks transcription yeast by snuppepuppan on 2006-06-19 13:18:59 as along with 18 people and 3 groups carlk tmmurali lfriedl balajis wnpx nickluscombe egralla citecat noano koller grahamc iris_2001 sgoetz shikin s041629 pmendes mtruksa chasmand kdl EBI-regulation GeneGo
	Genome-wide expression studies of atherosclerosis: critical issues in methodology, analysis, interpretation of transcriptomics data. [My Copy] Arterioscler Thromb Vasc Biol, Vol. 26, No. 6. (June 2006), pp. 1226-1235. by A. P. Bijnens, E. Lutgens, T. Ayoubi, J. Kuiper, A. J. Horrevoets, M. J. Daemen posted to atherosclerosis networks by snuppepuppan on 2006-06-19 13:18:46 as
	Transcriptome network component analysis with limited microarray data. [My Copy] Bioinformatics (9 June 2006) by Simon J J. Galbraith, Linh M M. Tran, James C C. Liao posted to networks transcription yeast by snuppepuppan on 2006-06-19 13:18:24 as along with 4 people and 1 group bertelsen guhjy kengg mariakmejia Plantandetc
	The genetics of variation in gene expression. [My Copy] Nat Genet, Vol. 32 Suppl (December 2002), pp. 522-525. by V. G. Cheung, R. S. Spielman posted to genevariation by snuppepuppan on 2005-12-21 12:21:43 as along with 3 people and 1 group adepace jo_davies annacarina07 EisenLab
	Innovation: Can cell systems biology rescue drug discovery? [My Copy] Nature Reviews Drug Discovery, Vol. 4, No. 6. (01 June 2005), pp. 461-467. by Eugene C. Butcher posted to findingtargets by snuppepuppan on 2005-12-20 14:50:37 as along with 3 people reyez kuhn eweaver
	Systems modeling: a pathway to drug discovery. [My Copy] Curr Opin Chem Biol, Vol. 9, No. 4. (August 2005), pp. 400-406. by P. Rajasethupathy, S. J. Vayttaden, U. S. Bhalla posted to findingtargets networks by snuppepuppan on 2005-12-20 14:50:17 as along with 4 people kuhn wnpx mmt jdiggans
	Using bioinformatics for drug target identification from the genome. [My Copy] Am J Pharmacogenomics, Vol. 5, No. 6. (2005), pp. 387-396. by Z. Jiang, Y. Zhou posted to findingtargets networks pharmacogenomics by snuppepuppan on 2005-12-20 14:50:02 as
	Drug target pharmacogenomics: an overview. [My Copy] Am J Pharmacogenomics, Vol. 1, No. 4. (2001), pp. 271-281. by J. A. Johnson posted to findingtargets pharmacogenomics by snuppepuppan on 2005-12-20 14:46:35 as
	Use of gene networks for identifying and validating drug targets. [My Copy] J Bioinform Comput Biol, Vol. 1, No. 3. (October 2003), pp. 459-474. by S. Imoto, C. J. Savoie, S. Aburatani, et al.S. Kim, K. Tashiro, S. Kuhara, S. Miyano posted to findingtargets networks by snuppepuppan on 2005-12-20 14:43:47 as along with 1 person wnpx
	Identifying drug active pathways from gene networks estimated by gene expression data. [My Copy] Genome Inform Ser Workshop Genome Inform, Vol. 16, No. 1. (2005), pp. 182-191. by Y. Tamada, S. Imoto, K. Tashiro, S. Kuhara, S. Miyano posted to findingtargets networks by snuppepuppan on 2005-12-20 14:42:49 as along with 2 people abhik wnpx
	Systematic intervention of transcription for identifying network response to disease and cellular phenotypes. [My Copy] Bioinformatics (8 November 2005) by Huai Li, Ming Zhan posted to findingtargets networks by snuppepuppan on 2005-12-20 14:41:28 as along with 2 people abhik wnpx
	Self-assembling hypertexts, weblogs, and wikis [My Copy] In HYPERTEXT '02: Proceedings of the thirteenth ACM conference on Hypertext and hypermedia (2002), pp. 149-149. by Stuart Moulthrop, Mark Bernstein, Sean Carton posted to blog socialsoftware wiki by korakot on 2005-12-13 10:02:24 as along with 22 people and 12 groups magnusenger PatrickD rickl rdhyee leei karen lijil AdrianMiles alifeleti McChris johnichiban alisonruth sachac wcrosbie k12u bicudo stagediver Pfaff9 martindale BenjaminHeitmann mattlandau AStevenson Philosophy_of_Information Blog_and_Wiki_Research ubc-ucl Wikipedia utoronto-iml OpenArchive CoP_CMS Usable_Security STS the-blank-net SITCRC The_Truants
	Detecting a network failure [My Copy] In FOCS '00: Proceedings of the 41st Annual Symposium on Foundations of Computer Science (2000) by J. Kleinberg posted to failure networks by korakot on 2005-12-08 02:18:46 as along with 3 people and 2 groups mercutio emranmohdtamil luhong Philosophy_of_Information Blog_and_Wiki_Research
	Maximizing the spread of influence through a social network [My Copy] (2003) by D. Kempe, J. Kleinberg, E. Tardos posted to influence social_networks by korakot on 2005-12-02 12:10:00 as along with 13 people and 6 groups sidmitra trunov A_Olympia pdlug yish mukundn scis0000001 krisl avivagabriel adriandefroment mangesh deysandeep mjchernyk Philosophy_of_Information Blog_and_Wiki_Research mathgamespatterns dtl vds-arg eni
	Zipf Law for Brazilian Cities [My Copy] (25 Nov 2005) by Newton J. Moura, Marcelo B. Ribeiro posted to powerlaws social_networks by korakot on 2005-11-30 04:17:10 as along with 2 people and 2 groups nettraq srose Philosophy_of_Information Blog_and_Wiki_Research
	The Social Life of Information [My Copy] (15 February 2002) by John S. Brown, Paul Duguid posted to information by korakot on 2005-11-29 14:09:05 as along with 29 people and 15 groups dullhunk narroyo jennaemilia rabourn Mandre hamish magnusenger A_Olympia tyfn warters ajpope cmalek scholz sga72 shelleylyn riadlem ento nkorf ChaTo wcrosbie NML cliveholtham xmap pool avivagabriel fata PaulBHartzog mjchernyk krisl arki Philosophy_of_Information Blog_and_Wiki_Research CSCW Sociology Semantic-Social-Networks Ubicomp Wikipedia OpenArchive CoP_CMS ETEC533 Knowledge_Management Social_Learning_Software_Lab MASSS Library 2.0
	Coevolution of dynamical states and interactions in dynamic networks [My Copy] (17 May 2004) by Martin G. Zimmermann, Victor M. Eguiluz, Maxi S. San Miguel posted to dynamics game-theory networks by korakot on 2005-11-29 12:29:18 as along with 3 people and 3 groups nettraq balicea azygmunt Philosophy_of_Information Blog_and_Wiki_Research AGH-IISG
	Search in weighted complex networks [My Copy] (18 Nov 2005) by Hari P. Thadakamalla, Reka Albert, Soundar R. T. Kumara posted to networks search weighted by korakot on 2005-11-29 12:23:33 as along with 6 people and 2 groups nettraq jrw dsteinbock stagediver srose balicea Philosophy_of_Information Blog_and_Wiki_Research
	Finding and evaluating community structure in networks [My Copy] (11 August 2003) by M. E. J. Newman, M. Girvan posted to community identification by korakot on 2005-11-18 03:14:34 as along with 36 people and 11 groups RayRa almadana swp09 dakelley phauly shelleylyn breyten schaal ldietz shivaram bj lfriedl eyliu Peterfine entropy fukken bigbossman hamasaki nojhan dbatorski azygmunt adriandefroment Guff32 abonchen andreacapocci jmarcelino salvoscellato jasonn AnneB HenryR theus apwesolowski dpf kubyaddi mpotamias jmchauvet Philosophy_of_Information Blog_and_Wiki_Research SRA_at_IRST kdl aLifeComplexSys EvolutionaryComputation ComplexAdaptiveSystems Metaheuristics Optimization ilps AGH-IISG
	Defining and identifying communities in networks [My Copy] (27 Feb 2004) by Filippo Radicchi, Claudio Castellano, Federico Cecconi, Vittorio Loreto, Domenico Parisi posted to community identification by korakot on 2005-11-18 03:13:41 as along with 10 people and 6 groups blue-life123 AnneB schaal ldietz yish merazzle iris_2001 jpbarrette rrbarb jmchauvet Philosophy_of_Information Blog_and_Wiki_Research mathgamespatterns dtl vds-arg eni
	The centrality of groups and classes. [My Copy] Journal of Mathematical Sociology, Vol. 23, No. 3. (1999), pp. 181-201. by M. G. Everett, S. P. Borgatti posted to centrality by korakot on 2005-11-18 03:10:04 as along with 1 person and 3 groups nkorf Philosophy_of_Information Blog_and_Wiki_Research Semantic-Social-Networks
	Nonequilibrium transition induced by mass media in a model for social influence [My Copy] (8 Nov 2005) by J. C. González-Avella, M. G. Cosenza, K. Tucci posted to influence media networks by korakot on 2005-11-18 03:05:16 as along with 2 people and 2 groups nettraq ansobol Philosophy_of_Information Blog_and_Wiki_Research
	Don't take my folders away!: organizing personal information to get ghings done [My Copy] In CHI '05: CHI '05 extended abstracts on Human factors in computing systems (2005), pp. 1505-1508. by William Jones, Ammy J. Phuwanartnurak, Rajdeep Gill, Harry Bruce posted to gtd tagging by korakot on 2005-11-18 02:39:48 as along with 39 people and 12 groups ianturton krisl realheld hyhu84 draggin rabourn donnam tyfn vanesam jolilius indratmo amygdala alisonruth sachac kutabar klever manuelpq elainelally sjors Pfaff9 kate_waxlyrical technocrat cveres kaz24 shilad cornfusion domenico79 ayanos mbraly gphroh weiwu tellervo tkmosk avatar mzygmunt bangb jryall-tags sdw135 fryanpan PIM Semantic Desktop Philosophy_of_Information Blog_and_Wiki_Research TUCS-ES_Lab GroupLens utoronto-iml ETEC533 STS SITCRC CDG pim elearning_research
	We the Media [My Copy] (03 August 2004) by Dan Gillmor posted to blog media by korakot on 2005-11-11 07:33:40 as along with 19 people and 14 groups danicar ansobol ryanshaw gere69 giorgiobaresi terraces rhetor suigeneris ellyssa jhorwath kate_waxlyrical telekommander ilya pe3 jenna anansi peefeeyatko jfelipe intarissable Philosophy_of_Information Blog_and_Wiki_Research CSCW sims_phd_cohort_2005 digital_youth Wikipedia Online_Collaboration Online_Communities folksonomy STS OpenVanilla NetGenStudy localization elearning_research
	Hubs, authorities, and communities [My Copy] ACM Comput. Surv., Vol. 31, No. 4es. (1999), 5. by Jon M. Kleinberg posted to authority community hub by korakot on 2005-11-05 01:03:36 as along with 12 people and 7 groups fiacobelli cm3 carlblesius nkorf harperf hpiwowar merazzle scholze starchaser gcalda deysandeep aheilbut Philosophy_of_Information Blog_and_Wiki_Research mgh-lcs Semantic-Social-Networks hst-bmi GroupLens Web2
	The origin of bursts and heavy tails in human dynamics [My Copy] (16 May 2005) by Albert-László Barabási posted to burst dynamics powerlaws by korakot on 2005-11-02 15:01:31 as along with 5 people and 4 groups fierykylin A_Olympia MehdiMoussaid russellbeale jrw logics of knowledge Philosophy_of_Information Blog_and_Wiki_Research HCI-Bham
	Combining collaborative and contentbased filtering using conceptual graphs [My Copy] (2003) by P. Paulson, A. Tzanavari posted to collaborative-filtering by korakot on 2005-10-31 07:49:55 as along with 6 people and 4 groups thegoose zhaomin jrw nkorf lcoquelle chirayu_kong Philosophy_of_Information Blog_and_Wiki_Research Semantic-Social-Networks Social Web
	Social networks applied [My Copy] Intelligent Systems, IEEE [see also IEEE Intelligent Systems and Their Applications], Vol. 20, No. 1. (2005), pp. 80-93. by S. Staab, P. Domingos, P. Mike, et al.J. Golbeck, Li Ding, T. Finin, A. Joshi, A. Nowak, R. R. Vallacher posted to social_networks by korakot on 2005-10-30 10:34:55 as along with 9 people and 8 groups aalves A_Olympia nkorf sachac wcrosbie chadhogg tdrycker azygmunt pedrojorgecarneiro Philosophy_of_Information Blog_and_Wiki_Research Semantic-Social-Networks Wikipedia utoronto-iml CoP_CMS WiCa AGH-IISG
	Sharp Transition towards Shared Vocabularies in Multi-Agent Systems [My Copy] (9 Sep 2005) by A. Baronchelli, M. Felici, E. Caglioti, V. Loreto, L. Steels posted to convergence dynamics folksonomy tagging by korakot on 2005-10-30 10:31:28 as along with 16 people and 9 groups rabourn ansobol jrw garyfeng Borelli jrsinclair baronka yish elainelally junwang4 sjors mdoc Pfaff9 majak mzygmunt Scis0000002 Philosophy_of_Information Blog_and_Wiki_Research ReadingLab mathgamespatterns dtl vds-arg STS eni FAL
	Authoritative sources in a hyperlinked environment [My Copy] Journal of the ACM, Vol. 46, No. 5. (1999), pp. 604-632. by Jon M. K. Kleinberg posted to authority web by korakot on 2005-10-30 10:29:16 as along with 19 people and 4 groups inbeom cn_honjyo senseable-urb mpotamias vlee AbnerCYH Passerby macle camster ssn mapio anon_pl merazzle atbrew fwkroon gcalda michaelmampaey dave_d bemike Philosophy_of_Information dbk-lab Blog_and_Wiki_Research ADMiRes
	Small worlds: The structure of social networks [My Copy] by M. Newman posted to small-world social_networks by korakot on 2005-10-30 10:28:00 as along with 12 people and 7 groups jaspervoskuilen thegoose A_Olympia momonga sachac tea4two scottmoody eldaly ianturton merazzle fuzzy7761 azygmunt Philosophy_of_Information Blog_and_Wiki_Research IS-Lab utoronto-iml semantic-multicast-routing ARTI AGH-IISG
	Vertex similarity in networks [My Copy] (14 Oct 2005) by E. A. Leicht, Petter Holme, M. E. J. Newman posted to networks similarity topology by korakot on 2005-10-30 10:26:06 as along with 4 people and 2 groups showwayer trunov jrw jaspervoskuilen Philosophy_of_Information Blog_and_Wiki_Research
	Epidemics and percolation in small-world networks [My Copy] (7 Jan 2000) by Cristopher Moore, M. E. J. Newman posted to epidemics small-world by korakot on 2005-10-30 10:24:52 as along with 3 people and 2 groups dumpa mercutio fuzzy7761 Philosophy_of_Information Blog_and_Wiki_Research
	SYSTEMS BIOLOGY: Less Is More in Modeling Large Genetic Networks [My Copy] Science, Vol. 310, No. 5747. (21 October 2005), pp. 449-451. by Stefan Bornholdt posted to modeling networks by snuppepuppan on 2005-10-23 09:48:34 as along with 7 people and 1 group jmenche eldan jmeppley balajis wnpx biosv fishtank Bioinformatics
	Evolving networks by merging cliques [My Copy] (18 Oct 2005) by Kazuhiro Takemoto, Chikoo Oosawa posted to networks powerlaws by korakot on 2005-10-22 15:47:47 as along with 1 person and 2 groups nettraq Philosophy_of_Information Blog_and_Wiki_Research
	Solution for the properties of a clustered network [My Copy] (18 Oct 2005) by Juyong Park, M. E. J. Newman posted to clustering networks by korakot on 2005-10-22 14:48:51 as along with 1 person and 2 groups nettraq Philosophy_of_Information Blog_and_Wiki_Research
	Towards a Theory of Scale-Free Graphs: Definition, Properties, and Implications (Extended Version) [My Copy] (18 Oct 2005) by Lun Li, David Alderson, Reiko Tanaka, John C. Doyle, Walter Willinger posted to scalefree-networks by korakot on 2005-10-22 14:28:56 as along with 21 people and 2 groups donade jaspervoskuilen behrang zufar panisson ssuri nettraq ansobol ldfu BarrosH scis0000001 NeilInCanadia bigbossman shashikant PhilipEvans Repton dbilar gionis iris_2001 mylit kikiblue7 Philosophy_of_Information Blog_and_Wiki_Research
	The structure of scientific collaboration networks [My Copy] (12 Jul 2000) by M. E. J. Newman posted to collaboration networks by korakot on 2005-10-22 14:14:05 as along with 9 people and 3 groups nicklynch karbak PatrickD pdlug annagold elijahwright soblo ianturton salvoscellato Philosophy_of_Information Blog_and_Wiki_Research Wikipedia
	Small-world phenomena and the dynamics of information [My Copy] (2001) by J. Kleinberg posted to dynamics information small-world by korakot on 2005-10-22 14:09:30 as along with 8 people and 9 groups dcombe vaasu srinaths merazzle jwdietrich fuzzy7761 sugarexpletive ransombriggs Philosophy_of_Information Blog_and_Wiki_Research MathBio Netmob P2P Cybernetics Biomedical_Cybernetics oktave-labs AQUA-FONTIS-Study
	Deterministic Scale-Free Networks [My Copy] (6 Feb 2002) by Albert-Laszlo Barabasi, Erzsebet Ravasz, Tamas Vicsek posted to scalefree-networks by korakot on 2005-10-22 14:04:29 as along with 8 people and 4 groups ansobol jrw ChaTo bluebird MaineC srinaths lyongu scottmoody Philosophy_of_Information Blog_and_Wiki_Research semantic-multicast-routing oktave-labs
	Shortest paths and load scaling in scale-free trees. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 69, No. 3 Pt 2. (March 2004) by B. Bollobás, O. Riordan posted to networks scalefree-networks by korakot on 2005-10-22 13:10:04 as along with 5 people and 4 groups camster lyongu scottmoody scis0000001 fuzzy7761 Philosophy_of_Information dbk-lab Blog_and_Wiki_Research semantic-multicast-routing
	Network Forms of Organization [My Copy] Annual Review of Sociology, Vol. 24 (1998), pp. 57-76. by Joel M. Podolny, Karen L. Page posted to organization social_networks by korakot on 2005-10-22 13:07:57 as along with 7 people and 6 groups rrbarb aalves rex A_Olympia mbliemel jwdietrich jaspervoskuilen Philosophy_of_Information Blog_and_Wiki_Research MathBio Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study