kgutwin's library 380 articles Export

	Fibrinogen: a preliminary analysis of the amino acid sequences of the portion of the alpha, beta and gamma-chains postulated to form the interdomainal link between globular regions of the molecule. [My Copy] Journal of molecular biology, Vol. 120, No. 4. (25 April 1978), pp. 545-551. by D. A. Parby posted to need-pdf fibrinogen by kgutwin on 2009-09-20 22:47:49 as
	Designation of sequences involved in the "coiled-coil" interdomainal connections in fibrinogen: constructions of an atomic scale model. [My Copy] Journal of molecular biology, Vol. 120, No. 2. (5 April 1978), pp. 311-325. by R. F. Doolittle, D. M. Goldbaum, L. R. Doolittle posted to need-pdf fibrinogen coiled-coils by kgutwin on 2009-09-20 22:47:20 as
	Gene duplication and recruitment of a specific tropomyosin into striated muscle cells in the jellyfish <I>Podocoryne carnea</I> [My Copy] The Journal of Experimental Zoology, Vol. 285, No. 4. (1999), pp. 378-386. by Hans Gröger, Patrick Callaerts, Walter J. Gehring, Volker Schmid posted to tropomyosin coiled-coils by kgutwin on 2009-08-13 22:35:04 as
	Hydra tropomyosin TROP1 is expressed in head-specific epithelial cells and is a major component of the cytoskeletal structure that anchors nematocytes [My Copy] J Cell Sci, Vol. 107, No. 6. (1 June 1994), pp. 1403-1411. by M. S. de Haro, L. M. Salgado, C. N. David, T. C. Bosch posted to tropomyosin coiled-coils by kgutwin on 2009-08-13 20:12:46 as
	Modulation of Myosin Function by Isoform-specific Properties of Saccharomyces cerevisiae and Muscle Tropomyosins [My Copy] J. Biol. Chem., Vol. 276, No. 37. (7 September 2001), pp. 34832-34839. by James Strand, Mahta Nili, Earl Homsher, Larry S. Tobacman posted to tropomyosin coiled-coils by kgutwin on 2009-08-11 21:40:15 as
	Prediction and integration of regulatory and protein-protein interactions. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 541 (2009), pp. 101-143. by Duangdao Wichadakul, Jason McDermott, Ram Samudrala posted to interactions litreview2009 predictions by kgutwin on 2009-08-05 23:00:20 as
	Prediction of protein-protein interactions: a study of the co-evolution model. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 541 (2009), pp. 61-88. by Itai Sharon, Jason V. Davis, Golan Yona posted to interactions litreview2009 predictions by kgutwin on 2009-08-05 23:00:04 as along with 3 people chica zwang phoenixzxl
	Inferring protein-protein interactions from multiple protein domain combinations. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 541 (2009), pp. 43-59. by Simon P. Kanaan, Chengbang Huang, Stefan Wuchty, Danny Z. Chen, Jesús A. Izaguirre posted to interactions litreview2009 predictions by kgutwin on 2009-08-05 22:59:45 as along with 1 person zwang
	Complex discovery from weighted PPI networks. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 15. (1 August 2009), pp. 1891-1897. by Guimei Liu, Limsoon Wong, Hon Nian N. Chua posted to complex litreview2009 predictions by kgutwin on 2009-08-05 22:58:55 as along with 7 people kiekyon zwang friendpine poirel neils tmmurali grahamc
	Computational prediction of protein-protein interactions. [My Copy] Molecular biotechnology, Vol. 38, No. 1. (20 January 2008), pp. 1-17. by Lucy Skrabanek, Harpreet K. Saini, Gary D. Bader, Anton J. Enright posted to interactions litreview2009 predictions by kgutwin on 2009-08-05 22:57:24 as along with 7 people iris_2001 jperkins kiekyon jwhitney ruvido guhjy penpen926
	Charged single alpha-helix: A versatile protein structural motif [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 74, No. 4. (March 2009), pp. 905-916. by Dániel Süveges, Zoltán Gáspári, Gábor Tóth, László Nyitray posted to litreview2009 single-alpha-helix by kgutwin on 2009-08-05 22:45:29 as along with 1 person reyez
	Identification of interacting regions within the coiled coil of the Escherichia coli structural maintenance of chromosomes protein MukB. [My Copy] Journal of molecular biology, Vol. 391, No. 1. (7 August 2009), pp. 57-73. by Yinyin Li, Christopher S. Weitzel, Randy J. Arnold, Martha G. Oakley posted to alignment antiparallel coiled-coils expt-evidence litreview2009 smc by kgutwin on 2009-08-05 22:16:45 as along with 1 person carlosjavierna
	Probing the recognition properties of the antiparallel coiled coil motif from PKN by protein grafting. [My Copy] Biochemistry, Vol. 47, No. 51. (23 December 2008), pp. 13564-13572. by Yinyin Li, Harmeet Kaur, Martha G. Oakley posted to antiparallel hairpin interactions intramolecular litreview2009 by kgutwin on 2009-08-05 22:11:31 as
	When a predicted coiled coil is really a single [small alpha]-helix, in myosins and other proteins [My Copy] Soft Matter, Vol. 5, No. 13. (2009), pp. 2493-2503. by Michelle Peckham, Peter J. Knight posted to litreview2009 myosin predictions single-alpha-helix by kgutwin on 2009-08-05 21:52:55 as along with 1 person melting
	Single-molecule studies of SNARE complex assembly reveal parallel and antiparallel configurations. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 25. (9 December 2003), pp. 14800-14805. by K. Weninger, M. E. Bowen, S. Chu, A. T. Brunger posted to antiparallel post-defense snare by kgutwin on 2009-05-22 04:13:49 as along with 1 person yusdi
	The molecular architecture of the nuclear pore complex [My Copy] Nature, Vol. 450, No. 7170. (29 November 2007), pp. 695-701. by Frank Alber, Svetlana Dokudovskaya, Liesbeth M. Veenhoff, et al.Wenzhu Zhang, Julia Kipper, Damien Devos, Adisetyantari Suprapto, Orit Karni-Schmidt, Rosemary Williams, Brian T. Chait, Andrej Sali, Michael P. Rout posted to npc post-defense structure by kgutwin on 2009-05-21 01:17:30 as along with 9 people MatthiasReimann hadesnumb chad_davis neils cjeans zwang mkikkawa faion phoenixzxl
	Integrating Diverse Data for Structure Determination of Macromolecular Assemblies [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (4 March 2008), pp. 443-477. by Frank Alber, Friedrich Förster, Dmitry Korkin, Maya Topf, Andrej Sali posted to npc review post-defense by kgutwin on 2009-05-21 01:16:02 as along with 5 people mijam carlk noraziz chad_davis phoenixzxl
	A computationally directed screen identifying interacting coiled coils from Saccharomyces cerevisiae. [My Copy] Proc Natl Acad Sci U S A, Vol. 97, No. 24. (21 November 2000), pp. 13203-13208. by J. R. Newman, E. Wolf, P. S. Kim posted to coiled-coils post-defense yeast-2-hybrid by kgutwin on 2009-05-20 23:51:30 as along with 2 people hplatero phoenixzxl
	Crystal structure of the endosomal SNARE complex reveals common structural principles of all SNAREs [My Copy] Nat Struct Mol Biol, Vol. 9, No. 2. (February 2002), pp. 107-111. by Wolfram Antonin, Dirk Fasshauer, Stefan Becker, Reinhard Jahn, Thomas R. Schneider posted to post-defense review snare structure by kgutwin on 2009-05-20 23:45:44 as
	SNAREs — engines for membrane fusion [My Copy] Nature Reviews Molecular Cell Biology, Vol. 7, No. 9. (16 August 2006), pp. 631-643. by Reinhard Jahn, Richard H. Scheller posted to post-defense review snare specificity by kgutwin on 2009-05-20 23:44:56 as along with 1 person and 1 group borisbernhardt NOEL
	The specificity of SNARE-dependent fusion is encoded in the SNARE motif. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 10. (9 March 2004), pp. 3376-3380. by F. Paumet, V. Rahimian, J. E. Rothman posted to coiled-coils post-defense snare specificity by kgutwin on 2009-05-20 23:32:19 as along with 1 person marck
	Binding interactions control SNARE specificity in vivo [My Copy] J. Cell Biol., Vol. 183, No. 6. (15 December 2008), pp. 1089-1100. by Hui-Ju Yang, Hideki Nakanishi, Song Liu, James A. Mcnew, Aaron M. Neiman posted to post-defense snare specificity by kgutwin on 2009-05-20 23:31:58 as
	X-ray vs. NMR structures as templates for computational protein design [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 77, No. 1. (2009), pp. 97-110. by Michael Schneider, Xiaoran Fu, Amy E. Keating posted to keating-import by kgutwin on 2009-05-20 21:18:20 as along with 3 people klexa reyez paulschlesinger
	A General Model for Preferential Hetero-oligomerization of LIN-2/7 Domains: MECHANISM UNDERLYING DIRECTED ASSEMBLY OF SUPRAMOLECULAR SIGNALING COMPLEXES [My Copy] J. Biol. Chem., Vol. 280, No. 46. (18 November 2005), pp. 38528-38536. by Keiko Y. Petrosky, Horng D. Ou, Frank Lohr, Volker Dotsch, Wendell A. Lim posted to heterodimer structure by kgutwin on 2009-05-20 21:04:03 as
	The Ste5 Scaffold Allosterically Modulates Signaling Output of the Yeast Mating Pathway [My Copy] Science, Vol. 311, No. 5762. (10 February 2006), pp. 822-826. by Roby P. Bhattacharyya, Attila Remenyi, Matthew C. Good, Caleb J. Bashor, Arnold M. Falick, Wendell A. Lim posted to post-defense scaffold by kgutwin on 2009-05-20 21:03:35 as along with 3 people nirfriedman tmt laurabailey
	Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms. [My Copy] Science, Vol. 299, No. 5609. (14 February 2003), pp. 1061-1064. by S. H. Park, A. Zarrinpar, W. A. Lim posted to kinase post-defense scaffold by kgutwin on 2009-05-20 21:03:08 as along with 2 people rklancer tmt
	Using Engineered Scaffold Interactions to Reshape MAP Kinase Pathway Signaling Dynamics [My Copy] Science, Vol. 319, No. 5869. (14 March 2008), pp. 1539-1543. by Caleb J. Bashor, Noah C. Helman, Shude Yan, Wendell A. Lim posted to bzip kinase post-defense scaffold by kgutwin on 2009-05-20 21:02:53 as along with 6 people jsaucerman yarikson reidw lisa1 biomcgary melting
	Another look at the conditions for the extraction of protein knowledge-based potentials [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Marcos R. Betancourt posted to statpot by kgutwin on 2009-05-20 19:53:39 as along with 1 person RamuAnandakrishnan
	A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules [My Copy] Journal of the American Chemical Society, Vol. 117, No. 19. (1 May 1995), pp. 5179-5197. by Wendy D. Cornell, Piotr Cieplak, Christopher I. Bayly, et al.Ian R. Gould, Kenneth M. Merz, David M. Ferguson, David C. Spellmeyer, Thomas Fox, James W. Caldwell, Peter A. Kollman posted to amber post-defense potential by kgutwin on 2009-05-20 08:03:04 as along with 6 people Lombardo_7 softsimu coomteng flbarroso pavanghatty dfgreen
	CHARMM: A program for macromolecular energy, minimization, and dynamics calculations [My Copy] Journal of Computational Chemistry, Vol. 4, No. 2. (1983), pp. 187-217. by Bernard R. Brooks, Robert E. Bruccoleri, Barry D. Olafson, David J. States, S. Swaminathan, Martin Karplus posted to charmm post-defense potential by kgutwin on 2009-05-20 08:02:38 as along with 16 people ubcg08l flbarroso nickolay newton1234 r2s2 rpetrenko oceanwind RamuAnandakrishnan tovrstra dfgreen Lombardo_7 dgront mmuecke rabio saravan gisle
	Ab initio modeling of small proteins by iterative TASSER simulations [My Copy] BMC Biology, Vol. 5 (08 May 2007), 17. by Sitao Wu, Jeffrey Skolnick, Yang Zhang posted to ab-initio post-defense tasser by kgutwin on 2009-05-20 07:47:17 as along with 2 people saunders j3xucite
	Template-based modeling and free modeling by I-TASSER in CASP7 [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 69, No. S8. (2007), pp. 108-117. by Yang Zhang posted to casp post-defense predictions structure tasser ab-initio by kgutwin on 2009-05-20 07:39:31 as
	Physically realistic homology models built with ROSETTA can be more accurate than their templates. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 14. (4 April 2006), pp. 5361-5366. by K. M. Misura, D. Chivian, C. A. Rohl, D. E. Kim, D. Baker posted to homology-model post-defense rosetta by kgutwin on 2009-05-20 07:38:28 as along with 6 people j3xucite jwm balajis dgront bilab BioNica
	Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. [My Copy] Proteins, Vol. 69, No. S8. (25 September 2007), pp. 118-128. by Rhiju Das, Bin Qian, Srivatsan Raman, et al.Robert Vernon, James Thompson, Philip Bradley, Sagar Khare, Michael D D. Tyka, Divya Bhat, Dylan Chivian, David E E. Kim, William H H. Sheffler, Lars Malmström, Andrew M M. Wollacott, Chu Wang, Ingemar Andre, David Baker posted to casp post-defense predictions rosetta structure ab-initio by kgutwin on 2009-05-20 07:37:22 as along with 3 people mcbla jwm Ema
	Protein-Protein Docking with Backbone Flexibility [My Copy] Journal of Molecular Biology, Vol. 373, No. 2. (19 October 2007), pp. 503-519. by Chu Wang, Philip Bradley, David Baker posted to docking post-defense rosetta by kgutwin on 2009-05-20 07:36:57 as along with 6 people and 2 groups mijam csrocha barry jwm xdeupi Ema structural_bioinformatics Bioinformatics
	Macromolecular Modeling with Rosetta [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008), pp. 363-382. by Rhiju Das, David Baker posted to ab-initio post-defense review rosetta by kgutwin on 2009-05-20 07:36:42 as along with 9 people bmduggan choonpeng mijam carlk phoenixzxl krapnik flbarroso saunders gisle
	KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007) by Y. H. Wong, T. Y. Lee, H. K. Liang, et al.C. M. Huang, T. Y. Wang, Y. H. Yang, C. H. Chu, H. D. Huang, M. T. Ko, J. K. Hwang posted to kinase post-defense predictions specificity by kgutwin on 2009-05-20 07:16:33 as along with 1 person guhjy
	Kinase-specific prediction of protein phosphorylation sites. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 527 (2009) by M. L. Miller, N. Blom posted to kinase post-defense predictions specificity by kgutwin on 2009-05-20 07:16:14 as along with 2 people niallhaslam hryk
	Substrate specificity of protein kinases and computational prediction of substrates. [My Copy] Biochim Biophys Acta, Vol. 1754, No. 1-2. (30 December 2005), pp. 200-209. by B. Kobe, T. Kampmann, J. K. Forwood, P. Listwan, R. I. Brinkworth posted to domains kinase post-defense predictions specificity by kgutwin on 2009-05-20 07:06:52 as
	The protein kinase family: conserved features and deduced phylogeny of the catalytic domains. [My Copy] Science, Vol. 241, No. 4861. (1 July 1988), pp. 42-52. by S. K. Hanks, A. M. Quinn, T. Hunter posted to domains kinase post-defense by kgutwin on 2009-05-20 07:01:32 as along with 2 people dragonrez jnk1
	The evolving model of calmodulin structure, function and activation. [My Copy] Structure (London, England : 1993), Vol. 3, No. 1. (15 January 1995), pp. 7-11. by B. E. Finn, S. Forsén posted to calmodulin domains ef-hand post-defense by kgutwin on 2009-05-20 07:00:49 as
	Keep your fingers off my DNA: protein-protein interactions mediated by C2H2 zinc finger domains. [My Copy] Cell biochemistry and biophysics, Vol. 50, No. 3. (2008), pp. 111-131. by K. J. Brayer, D. J. Segal posted to interactions post-defense review zincfinger by kgutwin on 2009-05-20 06:38:19 as along with 1 person dsekaran
	Zinc fingers--folds for many occasions. [My Copy] IUBMB life, Vol. 54, No. 6. (December 2002), pp. 351-355. by J. M. Matthews, M. Sunde posted to post-defense review zincfinger by kgutwin on 2009-05-20 06:37:58 as
	Structure and dynamic regulation of Src-family kinases. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 65, No. 19. (October 2008), pp. 3058-3073. by J. R. Engen, T. E. Wales, J. M. Hochrein, et al.M. A. Meyn, S. Banu Ozkan, I. Bahar, T. E. Smithgall posted to domains post-defense sh2 sh3 by kgutwin on 2009-05-20 06:09:19 as along with 1 person guhjy
	Characterization of domain-peptide interaction interface: a generic structure-based model to decipher the binding specificity of SH3 domains [My Copy] Mol Cell Proteomics (20 November 2008), M800450-MCP200. by Tingjun Hou, Zheng Xu, Wei Zhang, et al.William A. Mclaughlin, David A. Case, Yang Xu, Wei Wang posted to domains post-defense predictions sh3 by kgutwin on 2009-05-20 05:41:36 as along with 2 people phoenixzxl zwang
	Structure Based Prediction of the S. cerevisiae SH3-Ligand Interactions. [My Copy] Journal of molecular biology (23 March 2009) by Gregorio Fernandez-Ballester, Pedro Beltrao, Jose Manuel M. Gonzalez, et al.Young-Hwa H. Song, Matthias Wilmanns, Alfonso Valencia, Luis Serrano posted to domains ism post-defense predictions sh3 by kgutwin on 2009-05-20 05:41:04 as along with 1 person neils
	Prediction of phosphotyrosine signaling networks using a scoring matrix-assisted ligand identification approach. [My Copy] Nucleic acids research, Vol. 36, No. 10. (June 2008), pp. 3263-3273. by L. Li, C. Wu, H. Huang, K. Zhang, J. Gan, S. S. Li posted to domains post-defense predictions sh2 by kgutwin on 2009-05-20 05:40:08 as along with 1 person hryk
	A Specificity Map for the PDZ Domain Family [My Copy] PLoS Biology, Vol. 6, No. 9. (1 September 2008), e239. by Raffi Tonikian, Yingnan Zhang, Stephen L. Sazinsky, et al.Bridget Currell, Jung-Hua Yeh, Boris Reva, Heike A. Held, Brent A. Appleton, Marie Evangelista, Yan Wu, Xiaofeng Xin, Andrew C. Chan, Somasekar Seshagiri, Laurence A. Lasky, Chris Sander, Charles Boone, Gary D. Bader, Sachdev S. Sidhu posted to domains pdz post-defense predictions by kgutwin on 2009-05-20 05:37:28 as along with 6 people and 3 groups balicea grahamc markchen zwang cabbagesofdoom barry structural_bioinformatics McCammon Bioinformatics
	Quantification of PDZ domain specificity, prediction of ligand affinity and rational design of super-binding peptides. [My Copy] Journal of molecular biology, Vol. 343, No. 3. (22 October 2004), pp. 703-718. by U. Wiedemann, P. Boisguerin, R. Leben, et al.D. Leitner, G. Krause, K. Moelling, R. Volkmer-Engert, H. Oschkinat posted to domains pdz post-defense predictions spot-array by kgutwin on 2009-05-20 05:37:05 as
	PDZ domain proteins: Scaffolds for signaling complexes [My Copy] Current Biology, Vol. 7, No. 12. (01 December 1997), pp. R770-R773. by Rama Ranganathan, Elliott M. Ross posted to domains pdz post-defense by kgutwin on 2009-05-20 05:32:04 as

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coiled-coils	138
predictions	75
post-defense	70
structure	64
bzip	41
statpot	37
review	33
trimer	33
interactions	30
historical	27
antiparallel	23
newfams-evidence	21
design	20
residue-preferences	17
tropomyosin	17
dimer	16
keating-import	16
litreview2008	16
oakley-import	15
analysis	13
database	13
domains	12
trigger-sequence	12
need-pdf	11
potential	11
expt-evidence	10
secondary-structure	10
helix-packing	9
litreview2009	9
specificity	9
coupling-energy	8
crick-param	8
docking	8
multicoil	8
ori-dep-potential	8
paircoil	8
rosetta	8
alignment	7
dfire	7
electrostatics	7
modeling	7
myosin	7
folding	6
keratin	6
kinase	6
nemo	6
reference-state	6
snare	6
socket	6
threading	6
ab-initio	5
families	5
genome	5
newcoils	5
svm	5
chou-fasman	4
collagen	4
homodimer	4
interfaces	4
ism	4
zincfinger	4
cluster-expansion	3
contact	3
correlations	3
fiber-diffraction	3
hemagglutinin	3
heterodimer	3
homologs	3
laminin	3
learncoil	3
marcoil	3
miyazawa-jernigan	3
molecular-mechanics	3
multiprospector	3
pdz	3
profiles	3
reduced	3
right-handed	3
scaffold	3
sequence	3
sh3	3
sindbis-virus	3
tenascin	3
tetramer	3
tpr	3
astrin	2
blast	2
campbd	2
casp	2
charmm	2
chemistry	2
dope	2
electron-microscopy	2
fibrinogen	2
gor	2
hmm	2
hsfbp1	2
interprets	2
kinetics	2
knobs-into-holes	2
lattice-model	2
mlp	2
motions	2
multiprot	2
npc	2
numa	2
opus	2
prediction	2
rational-model	2
sh2	2
short	2
single-alpha-helix	2
spb	2
spc110p	2
spectrin	2
tasser	2
theoretical	2
all-atom	1
amber	1
arabidopsis	1
atpase	1
binding	1
biojava	1
brca1	1
calmodulin	1
chromophore	1
clashes	1
classy	1
clpb	1
clustering	1
complex	1
cortexillin	1
divergence	1
dna	1
dynein	1
eef1	1
ef-hand	1
esm	1
fer	1
foldx	1
fractal	1
functions	1
fusion	1
genbank	1
gp41	1
hairpin	1
heptad-shift	1
homology-model	1
hpc	1
hsf	1
hydrogen-bond	1
information-theory	1
intramolecular	1
l1orf1	1
lattice	1
matrilin	1
microarray	1
minimization	1
model-forms	1
orientation	1
p-het	1
pqs	1
predicted-cc	1
psipred	1
ramachandran	1
residue-composition	1
rna	1
rop	1
scop	1
ser-rs	1
smc	1
snv_n	1
solvent	1
spot-array	1
structure-aln	1
substitution-matrix	1
systers	1
tsp1	1
ultra-high-xtal	1
uniref	1
vbp	1
yeast-2-hybrid	1

kgutwin's library 380 articles Export

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