kgutwin's interactions [30 articles] Export

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	Prediction and integration of regulatory and protein-protein interactions. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 541 (2009), pp. 101-143. by Duangdao Wichadakul, Jason McDermott, Ram Samudrala posted to interactions litreview2009 predictions by kgutwin on 2009-08-05 23:00:20 as
	Prediction of protein-protein interactions: a study of the co-evolution model. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 541 (2009), pp. 61-88. by Itai Sharon, Jason V. Davis, Golan Yona posted to interactions litreview2009 predictions by kgutwin on 2009-08-05 23:00:04 as along with 3 people chica zwang phoenixzxl
	Inferring protein-protein interactions from multiple protein domain combinations. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 541 (2009), pp. 43-59. by Simon P. Kanaan, Chengbang Huang, Stefan Wuchty, Danny Z. Chen, Jesús A. Izaguirre posted to interactions litreview2009 predictions by kgutwin on 2009-08-05 22:59:45 as along with 1 person zwang
	Computational prediction of protein-protein interactions. [My Copy] Molecular biotechnology, Vol. 38, No. 1. (20 January 2008), pp. 1-17. by Lucy Skrabanek, Harpreet K. Saini, Gary D. Bader, Anton J. Enright posted to interactions litreview2009 predictions by kgutwin on 2009-08-05 22:57:24 as along with 7 people iris_2001 jperkins kiekyon jwhitney ruvido guhjy penpen926
	Probing the recognition properties of the antiparallel coiled coil motif from PKN by protein grafting. [My Copy] Biochemistry, Vol. 47, No. 51. (23 December 2008), pp. 13564-13572. by Yinyin Li, Harmeet Kaur, Martha G. Oakley posted to antiparallel hairpin interactions intramolecular litreview2009 by kgutwin on 2009-08-05 22:11:31 as
	Keep your fingers off my DNA: protein-protein interactions mediated by C2H2 zinc finger domains. [My Copy] Cell biochemistry and biophysics, Vol. 50, No. 3. (2008), pp. 111-131. by K. J. Brayer, D. J. Segal posted to interactions post-defense review zincfinger by kgutwin on 2009-05-20 06:38:19 as along with 1 person dsekaran
	Interrogating protein interaction networks through structural biology [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 9. (30 April 2002), pp. 5896-5901. by Patrick Aloy, Robert B. Russell posted to interactions interprets predictions statpot post-defense by kgutwin on 2009-05-19 19:02:58 as along with 15 people and 3 groups beete aceol tomhebbron bpcusack ana barry baaden bicko lfriedl chad_davis henschel ruvido cjeans tale Evangelia structural_bioinformatics kdl Bioinformatics
	InterPreTS: protein interaction prediction through tertiary structure. [My Copy] Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 161-162. by P. Aloy, R. B. Russell posted to interactions interprets predictions statpot structure post-defense by kgutwin on 2009-05-19 18:52:27 as along with 6 people baaden bicko chad_davis henschel ruvido Pao-Yang
	Protein-protein interactions [My Copy] by Catherine Royer posted to interactions post-defense by kgutwin on 2009-05-18 21:16:29 as
	Cross-species annotation of basic leucine zipper factor interactions: Insight into the evolution of closed interaction networks. [My Copy] Mol Biol Evol, Vol. 23, No. 8. (August 2006), pp. 1480-1492. by C. D. Deppmann, R. S. Alvania, E. J. Taparowsky posted to bzip interactions review predictions by kgutwin on 2009-04-30 04:39:56 as along with 3 people cjeans hplatero gwenknight
	Predicting protein-protein interactions from primary structure [My Copy] Bioinformatics, Vol. 17, No. 5. (1 May 2001), pp. 455-460. by Joel R. Bock, David A. Gough posted to interactions svm predictions by kgutwin on 2009-04-24 03:12:19 as along with 7 people renatomilani joseolucha maryee cjeans Evangelia iris_2001 wilbur
	Analysis of coiled-coil interactions between core proteins of the spindle pole body [My Copy] Biochemistry, Vol. 47, No. 45. (Nov 2008), pp. 11858-11868. by N. Zizlsperger, V. N. Malashkevich, S. Pillay, A. E. Keating posted to coiled-coils interactions keating-import spb by kgutwin on 2009-04-08 21:33:49 as
	The interactome: predicting the protein-protein interactions in cells. [My Copy] Cellular & molecular biology letters, Vol. 14, No. 1. (6 October 2009), pp. 1-22. by Dariusz Plewczyński, Krzysztof Ginalski posted to interactions litreview2008 predictions review by kgutwin on 2008-11-19 23:03:36 as along with 1 person jperkins
	STRING 8--a global view on proteins and their functional interactions in 630 organisms. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D412-416. by Lars J. Jensen, Michael Kuhn, Manuel Stark, et al.Samuel Chaffron, Chris Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering posted to database interactions litreview2008 predictions by kgutwin on 2008-11-19 23:03:13 as along with 16 people and 1 group dfdong carlk mitko ilyashl hagechouchin443 lptolik kshameer allysonlister chad_davis larsjuhljensen druvus guhjy renatomilani grahamc behindtherabbit biehl Bioinformatics
	PIPs: human protein-protein interaction prediction database [My Copy] Nucl. Acids Res., Vol. 37, No. Database issue. (6 November 2008), gkn870. by Mark D. Mcdowall, Michelle S. Scott, Geoffrey J. Barton posted to database interactions litreview2008 predictions by kgutwin on 2008-11-19 23:02:57 as along with 5 people guhjy cerca renatomilani higueruelo grahamc
	EcID. A database for the inference of functional interactions in E. coli. [My Copy] Nucleic acids research (12 November 2008) by Andres Leon L. Eduardo, Ezkurdia Iakes, García Beatriz, Valencia Alfonso, Juan David posted to database interactions litreview2008 predictions by kgutwin on 2008-11-19 23:02:33 as along with 1 person guhjy
	Predicting DNA recognition by Cys2His2 zinc finger proteins. [My Copy] Bioinformatics (Oxford, England) (13 November 2008) by Anton V V. Persikov, Robert Osada, Mona Singh posted to dna interactions litreview2008 predictions svm zincfinger by kgutwin on 2008-11-19 23:02:08 as along with 5 people and 1 group lptolik maximilianh wilbur hugowill aalibes KeatingJClub
	Training set expansion: an approach to improving the reconstruction of biological networks from limited and uneven reliable interactions [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 243-250. by Kevin Y. Yip, Mark Gerstein posted to interactions litreview2008 predictions by kgutwin on 2008-11-19 23:01:28 as along with 6 people ptrobajo anf guhjy mstumpf imina grahamc
	Selectional and Mutational Scope of Peptides Sequestering the Jun-Fos Coiled-Coil Domain. [My Copy] Journal of molecular biology (17 May 2008) by Urs B B. Hagemann, Jody M M. Mason, Kristian M M. Müller, Katja M M. Arndt posted to coiled-coils interactions litreview2008 predictions by kgutwin on 2008-11-19 22:22:03 as along with 3 people Lombardo_7 marck kevinchannon
	A map of human protein interactions derived from co-expression of human mRNAs and their orthologs [My Copy] Mol Syst Biol, Vol. 4 (15 April 2008) by Arun K. Ramani, Zhihua Li, Traver G. Hart, Mark W. Carlson, Daniel R. Boutz, Edward M. Marcotte posted to interactions litreview2008 by kgutwin on 2008-11-19 22:07:38 as along with 11 people and 2 groups windman83 druvus jeremymiller tmmurali biomcgary phoenixzxl zwang giovanni grahamc ardalby ptrobajo KeatingJClub OPIG
	An integrative approach for predicting interactions of protein regions. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by Sven-Eric E. Schelhorn, Thomas Lengauer, Mario Albrecht posted to coiled-coils interactions litreview2008 by kgutwin on 2008-11-18 22:16:04 as along with 1 person chad_davis
	Structural Similarity Enhances Interaction Propensity of Proteins. [My Copy] J Mol Biol (10 November 2006) by D B B. Lukatsky, B E E. Shakhnovich, J Mintseris, E I I. Shakhnovich posted to analysis homodimer interactions theoretical by kgutwin on 2008-08-25 21:24:25 as along with 2 people choonpeng wilbur
	Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces [My Copy] Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2850-2855. by Selim A. Aytuna, Attila Gursoy, Ozlem Keskin posted to docking interactions multiprot predictions structure threading by kgutwin on 2008-08-15 19:45:28 as along with 4 people cjeans selrac higueruelo bicko
	MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading. [My Copy] Proteins, Vol. 49, No. 3. (15 November 2002), pp. 350-364. by L. Lu, H. Lu, J. Skolnick posted to interactions multiprospector predictions statpot threading by kgutwin on 2008-08-15 17:05:47 as along with 6 people and 5 groups ana bicko chad_davis marcius sangeetha ruvido structural_bioinformatics Bioinformatics insilicodrug BioinfoCIPF SGU-CIPF
	Development of unified statistical potentials describing protein-protein interactions. [My Copy] Biophys J, Vol. 84, No. 3. (March 2003), pp. 1895-1901. by H. Lu, L. Lu, J. Skolnick posted to interactions multiprospector predictions statpot structure by kgutwin on 2008-08-15 17:05:08 as along with 8 people kaarsinogen bicko mdimmic chad_davis cjeans selrac iris_2001 wilbur
	A knowledge-based potential function predicts the specificity and relative binding energy of RNA-binding proteins [My Copy] FEBS Journal, Vol. 274, No. 24. (December 2007), pp. 6378-6391. by Zheng, Suxin, Robertson, A. Timothy, Varani, Gabriele posted to interactions potential rna by kgutwin on 2008-08-14 23:09:17 as along with 1 person marck
	Analysing six types of protein-protein interfaces. [My Copy] J Mol Biol, Vol. 325, No. 2. (10 January 2003), pp. 377-387. by Y. Ofran, B. Rost posted to analysis interactions interfaces structure by kgutwin on 2008-08-14 23:07:07 as along with 2 people bicko higueruelo
	DARS (Decoys As the Reference State) Potentials for Protein-Protein Docking. [My Copy] Biophysical journal (1 August 2008) by Gwo-Yu Y. Chuang, Dima Kozakov, Ryan Brenke, Stephen R R. Comeau, Sandor Vajda posted to docking interactions reference-state statpot by kgutwin on 2008-08-11 21:58:32 as along with 1 person reyez
	Similar chemistry, but different bond preferences in inter versus intra-protein interactions. [My Copy] Proteins (7 February 2008) by Mati Cohen, Dana Reichmann, Hani Neuvirth, Gideon Schreiber posted to analysis database homodimer interactions interfaces by kgutwin on 2008-08-11 21:51:57 as along with 5 people RebeccaHamer viktor21614 bicko higueruelo Lombardo_7
	Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm. [My Copy] PLoS computational biology, Vol. 4, No. 4. (April 2008) by I. E. Sánchez, P. Beltrao, F. Stricher, et al.J. Schymkowitz, J. Ferkinghoff-Borg, F. Rousseau, L. Serrano posted to foldx genome interactions ism predictions statpot structure by kgutwin on 2008-06-20 21:20:47 as along with 2 people eskay cabbagesofdoom

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coiled-coils	138
predictions	75
post-defense	70
structure	64
bzip	41
statpot	37
review	33
trimer	33
interactions	30
historical	27
antiparallel	23
newfams-evidence	21
design	20
tropomyosin	17
residue-preferences	17
keating-import	16
dimer	16
litreview2008	16
oakley-import	15
database	13
analysis	13
trigger-sequence	12
domains	12
need-pdf	11
potential	11
secondary-structure	10
expt-evidence	10
helix-packing	9
specificity	9
litreview2009	9
crick-param	8
ori-dep-potential	8
multicoil	8
paircoil	8
rosetta	8
coupling-energy	8
docking	8
modeling	7
myosin	7
electrostatics	7
dfire	7
alignment	7
threading	6
socket	6
nemo	6
kinase	6
folding	6
snare	6
keratin	6
reference-state	6
svm	5
newcoils	5
ab-initio	5
genome	5
families	5
zincfinger	4
ism	4
chou-fasman	4
homodimer	4
collagen	4
interfaces	4
scaffold	3
tpr	3
molecular-mechanics	3
laminin	3
cluster-expansion	3
sh3	3
tenascin	3
reduced	3
miyazawa-jernigan	3
fiber-diffraction	3
multiprospector	3
contact	3
sequence	3
homologs	3
sindbis-virus	3
tetramer	3
marcoil	3
profiles	3
hemagglutinin	3
learncoil	3
right-handed	3
correlations	3
pdz	3
heterodimer	3
gor	2
spc110p	2
hmm	2
hsfbp1	2
electron-microscopy	2
multiprot	2
chemistry	2
single-alpha-helix	2
mlp	2
blast	2
campbd	2
kinetics	2
opus	2
charmm	2
fibrinogen	2
short	2
tasser	2
interprets	2
theoretical	2
astrin	2
npc	2
rational-model	2
motions	2
spb	2
lattice-model	2
spectrin	2
sh2	2
knobs-into-holes	2
casp	2
dope	2
numa	2
prediction	2
spot-array	1
model-forms	1
information-theory	1
ser-rs	1
calmodulin	1
fer	1
atpase	1
divergence	1
clustering	1
homology-model	1
uniref	1
yeast-2-hybrid	1
vbp	1
l1orf1	1
hsf	1
lattice	1
smc	1
classy	1
clashes	1
orientation	1
p-het	1
clpb	1
psipred	1
substitution-matrix	1
amber	1
chromophore	1
fusion	1
residue-composition	1
pqs	1
ramachandran	1
cortexillin	1
gp41	1
fractal	1
snv_n	1
systers	1
hairpin	1
tsp1	1
hydrogen-bond	1
foldx	1
esm	1
complex	1
eef1	1
structure-aln	1
hpc	1
solvent	1
brca1	1
arabidopsis	1
dynein	1
matrilin	1
genbank	1
intramolecular	1
dna	1
binding	1
predicted-cc	1
microarray	1
functions	1
rop	1
biojava	1
heptad-shift	1
minimization	1
ultra-high-xtal	1
all-atom	1
ef-hand	1
scop	1
rna	1

kgutwin's interactions [30 articles] Export

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