kgutwin's structure [64 articles] Export

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	The molecular architecture of the nuclear pore complex [My Copy] Nature, Vol. 450, No. 7170. (29 November 2007), pp. 695-701. by Frank Alber, Svetlana Dokudovskaya, Liesbeth M. Veenhoff, et al.Wenzhu Zhang, Julia Kipper, Damien Devos, Adisetyantari Suprapto, Orit Karni-Schmidt, Rosemary Williams, Brian T. Chait, Andrej Sali, Michael P. Rout posted to npc post-defense structure by kgutwin on 2009-05-21 01:17:30 as along with 9 people MatthiasReimann hadesnumb chad_davis neils cjeans zwang mkikkawa faion phoenixzxl
	Crystal structure of the endosomal SNARE complex reveals common structural principles of all SNAREs [My Copy] Nat Struct Mol Biol, Vol. 9, No. 2. (February 2002), pp. 107-111. by Wolfram Antonin, Dirk Fasshauer, Stefan Becker, Reinhard Jahn, Thomas R. Schneider posted to post-defense review snare structure by kgutwin on 2009-05-20 23:45:44 as
	A General Model for Preferential Hetero-oligomerization of LIN-2/7 Domains: MECHANISM UNDERLYING DIRECTED ASSEMBLY OF SUPRAMOLECULAR SIGNALING COMPLEXES [My Copy] J. Biol. Chem., Vol. 280, No. 46. (18 November 2005), pp. 38528-38536. by Keiko Y. Petrosky, Horng D. Ou, Frank Lohr, Volker Dotsch, Wendell A. Lim posted to heterodimer structure by kgutwin on 2009-05-20 21:04:03 as
	Template-based modeling and free modeling by I-TASSER in CASP7 [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 69, No. S8. (2007), pp. 108-117. by Yang Zhang posted to casp post-defense predictions structure tasser ab-initio by kgutwin on 2009-05-20 07:39:31 as
	Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. [My Copy] Proteins, Vol. 69, No. S8. (25 September 2007), pp. 118-128. by Rhiju Das, Bin Qian, Srivatsan Raman, et al.Robert Vernon, James Thompson, Philip Bradley, Sagar Khare, Michael D D. Tyka, Divya Bhat, Dylan Chivian, David E E. Kim, William H H. Sheffler, Lars Malmström, Andrew M M. Wollacott, Chu Wang, Ingemar Andre, David Baker posted to casp post-defense predictions rosetta structure ab-initio by kgutwin on 2009-05-20 07:37:22 as along with 3 people mcbla jwm Ema
	InterPreTS: protein interaction prediction through tertiary structure. [My Copy] Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 161-162. by P. Aloy, R. B. Russell posted to interactions interprets predictions statpot structure post-defense by kgutwin on 2009-05-19 18:52:27 as along with 6 people baaden bicko chad_davis henschel ruvido Pao-Yang
	Design of a novel globular protein fold with atomic-level accuracy. [My Copy] Science (New York, N.Y.), Vol. 302, No. 5649. (21 November 2003), pp. 1364-1368. by Brian Kuhlman, Gautam Dantas, Gregory C. Ireton, Gabriele Varani, Barry L. Stoddard, David Baker posted to design post-defense predictions rosetta structure by kgutwin on 2009-05-19 04:23:35 as along with 10 people bmduggan Diego_Prada onufriev apaydin dfgreen jwm hmk heymiki kevinchannon ca3295
	Toward High-Resolution de Novo Structure Prediction for Small Proteins [My Copy] Science, Vol. 309, No. 5742. (16 September 2005), pp. 1868-1871. by Philip Bradley, Kira M. S. Misura, David Baker posted to ab-initio post-defense predictions rosetta structure by kgutwin on 2009-05-19 04:17:00 as along with 11 people and 4 groups ucbcjbm paddydu BragilMassoud ana barry thaliana jwm vavi marcius gbart thamelry structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Tertiary templates for proteins 1Use of packing criteria in the enumeration of allowed sequences for different structural classes [My Copy] Journal of Molecular Biology*, Vol. 193, No. 4. (20 February 1987), pp. 775-791. by J. Ponder, F. Richards posted to historical need-pdf post-defense prediction structure threading by kgutwin on 2009-05-19 03:54:08 as along with 1 person carlosjavierna
	A method to identify protein sequences that fold into a known three-dimensional structure. [My Copy] Science, Vol. 253, No. 5016. (12 July 1991), pp. 164-170. by J. U. Bowie, R. Lüthy, D. Eisenberg posted to design prediction profiles structure post-defense by kgutwin on 2009-05-19 03:27:20 as along with 3 people fisherp apaydin chad_davis
	alpha -Helical Protein Assembly Motifs [My Copy] J. Biol. Chem., Vol. 272, No. 5. (31 January 1997), pp. 2583-2586. by Wayne D. Kohn, Colin T. Mant, Robert S. Hodges posted to review structure by kgutwin on 2009-05-19 01:42:49 as
	Iterative assembly of helical proteins by optimal hydrophobic packing. [My Copy] Structure (London, England : 1993), Vol. 16, No. 8. (August 2008), pp. 1257-1266. by G. A. Wu, E. A. Coutsias, K. A. Dill posted to helix-packing post-defense predictions structure by kgutwin on 2009-05-17 02:21:49 as
	Placement of the Structural Proteins in Sindbis Virus [My Copy] J. Virol., Vol. 76, No. 22. (15 November 2002), pp. 11645-11658. by Wei Zhang, Suchetana Mukhopadhyay, Sergei V. Pletnev, Timothy S. Baker, Richard J. Kuhn, Michael G. Rossmann posted to sindbis-virus structure by kgutwin on 2009-05-09 22:26:28 as along with 1 person dsmueller
	Generalized Crick equations for modeling noncanonical coiled coils. [My Copy] Journal of structural biology, Vol. 137, No. 1-2. (b 2002), pp. 41-53. by Gerald Offer, Matthew R. Hicks, Derek N. Woolfson posted to coiled-coils crick-param modeling structure by kgutwin on 2009-05-06 16:02:04 as along with 3 people and 1 group martainn oteri chgjb Structural Biology Group TorVergata
	Successful prediction of the coiled coil geometry of the GCN4 leucine zipper domain by simulated annealing: comparison to the X-ray structure. [My Copy] Proteins, Vol. 15, No. 2. (February 1993), pp. 133-146. by M. Nilges, A. T. Brünger posted to bzip coiled-coils modeling structure predictions by kgutwin on 2009-05-06 15:49:19 as along with 1 person hplatero
	A spring-loaded mechanism for the conformational change of influenza hemagglutinin [My Copy] Cell, Vol. 73, No. 4. (21 May 1993), pp. 823-832. by C. Carr posted to hemagglutinin structure by kgutwin on 2009-05-05 22:21:07 as
	Crystal structure of the repetitive segments of spectrin. [My Copy] Science (New York, N.Y.), Vol. 262, No. 5142. (24 December 1993), pp. 2027-2030. by Y. Yan, E. Winograd, A. Viel, T. Cronin, S. C. Harrison, D. Branton posted to alignment coiled-coils spectrin structure by kgutwin on 2009-04-29 20:46:06 as
	Automated design of specificity in molecular recognition. [My Copy] Nat Struct Biol, Vol. 10, No. 1. (January 2003), pp. 45-52. by J. J. Havranek, P. B. Harbury posted to bzip coiled-coils design specificity structure by kgutwin on 2009-04-27 04:42:34 as along with 2 people bethbromley phoenixzxl
	The Protein Data Bank and structural genomics [My Copy] Nucl. Acids Res., Vol. 31, No. 1. (1 January 2003), pp. 489-491. by John Westbrook, Zukang Feng, Li Chen, Huanwang Yang, Helen M. Berman posted to database structure by kgutwin on 2009-04-27 03:21:16 as along with 1 person flbarroso
	Crystal structure of a SNARE complex involved in synaptic exocytosis at 2.4 A resolution [My Copy] Nature, Vol. 395, No. 6700. (24 September 1998), pp. 347-353. by Bryan R. Sutton, Dirk Fasshauer, Reinhard Jahn, Axel T. Brunger posted to coiled-coils snare structure by kgutwin on 2009-04-26 03:17:20 as
	De novo simulations of the folding thermodynamics of the GCN4 leucine zipper. [My Copy] Biophysical journal, Vol. 77, No. 1. (July 1999), pp. 54-69. by D. Mohanty, A. Kolinski, J. Skolnick posted to bzip folding lattice molecular-mechanics structure lattice-model by kgutwin on 2009-04-24 21:12:26 as
	alpha-Helical coiled coils and bundles: How to design an alpha-helical protein [My Copy] Proteins: Structure, Function, and Genetics, Vol. 7, No. 1. (1990), pp. 1-15. by Carolyn Cohen, David A. D. Parry posted to coiled-coils design structure by kgutwin on 2009-04-23 20:25:02 as
	Crystal structure and molecular interactions of tropomyosin. [My Copy] Nature, Vol. 278, No. 5703. (29 March 1979), pp. 413-417. by G. N. Phillips, E. E. Lattman, P. Cummins, K. Y. Lee, C. Cohen posted to coiled-coils historical structure tropomyosin by kgutwin on 2009-04-23 19:59:08 as along with 1 person Haggan
	Structure of the ColE1 Rop protein at 1.7 p resolution1 [My Copy] Journal of Molecular Biology*, Vol. 196, No. 3. (August 1987), pp. 657-675. by D. Banner posted to coiled-coils historical rop structure by kgutwin on 2009-04-23 03:29:04 as
	A second class of synthetase structure revealed by X-ray analysis of Escherichia coli seryl-tRNA synthetase at 2.5 A. [My Copy] Nature, Vol. 347, No. 6290. (20 September 1990), pp. 249-255. by S. Cusack, C. Berthet-Colominas, M. Härtlein, N. Nassar, R. Leberman posted to coiled-coils ser-rs structure by kgutwin on 2009-04-23 03:21:30 as along with 1 person caldavis
	Repacking protein cores with backbone freedom: structure prediction for coiled coils. [My Copy] Proc Natl Acad Sci U S A, Vol. 92, No. 18. (29 August 1995), pp. 8408-8412. by P. B. Harbury, B. Tidor, P. S. Kim posted to coiled-coils crick-param modeling predictions structure by kgutwin on 2009-04-22 22:50:22 as along with 3 people oteri dfgreen bethbromley
	Automated design of the surface positions of protein helices. [My Copy] Protein Sci, Vol. 6, No. 6. (June 1997), pp. 1333-1337. by B. I. Dahiyat, D. B. Gordon, S. L. Mayo posted to coiled-coils design hydrogen-bond structure by kgutwin on 2009-04-22 22:36:07 as along with 2 people and 1 group lna nknii TCR_Signaling
	Geometrical Criteria for Formation of Coiled-Coil Structures of Polypeptide Chains [My Copy] Macromolecules, Vol. 9, No. 3. (1 May 1976), pp. 395-407. by Ken Nishikawa, Harold A. Scheraga posted to coiled-coils crick-param historical structure by kgutwin on 2009-04-08 22:44:48 as along with 1 person oteri
	Scaffolds, levers, rods and springs: diverse cellular functions of long coiled-coil proteins. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 61, No. 16. (August 2004), pp. 1996-2009. by A. Rose, I. Meier posted to coiled-coils review structure by kgutwin on 2009-04-04 02:04:59 as along with 2 people markchen phoenixzxl
	Visualization of an unstable coiled coil from the scallop myosin rod [My Copy] Nature, Vol. 424, No. 6946. (17 July 2003), pp. 341-345. by Yu Li, Jerry H. Brown, Ludmilla Reshetnikova, et al.Antal Blazsek, Laszlo Farkas, Laszlo Nyitray, Carolyn Cohen posted to coiled-coils myosin structure by kgutwin on 2009-04-01 22:13:27 as along with 1 person oteri
	Modeling the cAMP-induced allosteric transition using the crystal structure of CAP-cAMP at 2.1 A resolution. [My Copy] J Mol Biol, Vol. 304, No. 5. (15 December 2000), pp. 847-859. by J. M. Passner, S. C. Schultz, T. A. Steitz posted to campbd structure by kgutwin on 2009-03-22 21:04:33 as along with 1 person ruvido
	Global gene expression mediated by Thermus thermophilus SdrP, a CRPFNR family transcriptional regulator [My Copy] Molecular Microbiology, Vol. 70, No. 1. (October 2008), pp. 60-75. by Agari, Yoshihiro, Kashihara, et al. Aiko, Yokoyama, Shigeyuki, Kuramitsu, Seiki, Shinkai, Akeo posted to campbd structure by kgutwin on 2009-03-22 20:48:19 as
	Divergence of Quaternary Structures Among Bacterial Flagellar Filaments [My Copy] Science, Vol. 320, No. 5874. (18 April 2008), pp. 382-385. by Vitold E. Galkin, Xiong Yu, Jakub Bielnicki, et al.John Heuser, Cheryl P. Ewing, Patricia Guerry, Edward H. Egelman posted to divergence structure by kgutwin on 2009-03-22 04:07:06 as along with 1 person jbd4f
	Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3 A resolution. [My Copy] Nature, Vol. 289, No. 5796. (29 January 1981), pp. 366-373. by I. A. Wilson, J. J. Skehel, D. C. Wiley posted to coiled-coils hemagglutinin historical structure trimer by kgutwin on 2009-03-19 03:13:08 as
	Correlation between knowledge-based and detailed atomic potentials: application to the unfolding of the GCN4 leucine zipper. [My Copy] Proteins, Vol. 35, No. 4. (1 June 1999), pp. 447-452. by D. Mohanty, B. N. Dominy, A. Kolinski, C. L. Brooks, J. Skolnick posted to predictions lattice-model bzip statpot structure by kgutwin on 2009-03-19 01:08:24 as
	Tertiary structure prediction using mean-force potentials and internal energy functions: successful prediction for coiled-coil geometries. [My Copy] Folding & design, Vol. 2, No. 4. (1997) by S. I. O'Donoghue, M. Nilges posted to bzip esm need-pdf potential structure predictions by kgutwin on 2009-03-19 01:07:19 as
	Prediction of protein structure from ideal forms. [My Copy] Proteins (3 January 2008) by William R R. Taylor, Gail J J. Bartlett, Vijayalakshmi Chelliah, et al.Daniel Klose, Kuang Lin, Tom Sheldon, Inge Jonassen posted to predictions model-forms structure by kgutwin on 2009-03-18 15:56:31 as
	Open-and-shut cases in coiled-coil assembly: alpha-sheets and alpha-cylinders. [My Copy] Protein science : a publication of the Protein Society, Vol. 10, No. 3. (March 2001), pp. 668-673. by J. Walshaw, D. N. Woolfson posted to knobs-into-holes socket structure by kgutwin on 2009-03-17 20:16:57 as along with 1 person martainn
	A /`periodic table/' for protein structures [My Copy] Nature, Vol. 416, No. 6881. (11 April 2002), pp. 657-660. by William R. Taylor posted to socket structure by kgutwin on 2009-03-17 16:49:25 as along with 2 people tny martainn
	A Periodic Table of Coiled-Coil Protein Structures [My Copy] Journal of Molecular Biology, Vol. 385, No. 3. (23 January 2009), pp. 726-732. by Efrosini Moutevelis, Derek N. Woolfson posted to coiled-coils socket structure by kgutwin on 2009-03-16 21:24:02 as along with 4 people and 1 group pjkiley TLVincent Lombardo_7 patrickking KeatingJClub
	Nuclear magnetic resonance characterization of the Jun leucine zipper domain: unusual properties of coiled-coil interfacial polar residues. [My Copy] Biochemistry, Vol. 34, No. 18. (9 May 1995), pp. 6164-6174. by F. K. Junius, J. P. Mackay, W. A. Bubb, S. A. Jensen, A. S. Weiss, G. F. King posted to bzip coiled-coils expt-evidence residue-preferences structure by kgutwin on 2009-03-10 18:11:19 as
	Helix packing in proteins: prediction and energetic analysis of dimeric, trimeric, and tetrameric GCN4 coiled coil structures. [My Copy] Proteins, Vol. 20, No. 2. (October 1994), pp. 105-123. by W. L. DeLano, A. T. Brünger posted to coiled-coils bzip modeling residue-preferences structure trimer predictions by kgutwin on 2009-03-09 17:57:53 as along with 1 person hplatero
	Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins. [My Copy] Proteins, Vol. 34, No. 1. (1 January 1999), pp. 82-95. by K. T. Simons, I. Ruczinski, C. Kooperberg, B. A. Fox, C. Bystroff, D. Baker posted to potential rosetta statpot structure by kgutwin on 2009-02-23 16:27:59 as along with 1 person dgront
	Crystal structure of the hexamer of human heat shock factor binding protein 1. [My Copy] Proteins (2 September 2008) by Xueqi Liu, Lingfeng Xu, Yiwei Liu, et al.Xiaohang Tong, Guangyu Zhu, Xuejun C C. Zhang, Xuemei Li, Zihe Rao posted to coiled-coils hsfbp1 newfams-evidence structure by kgutwin on 2009-01-07 22:13:01 as
	SCOP: a structural classification of proteins database [My Copy] Nucleic Acids Research, Vol. 25, No. 1. (1 January 1997), pp. 236-239. by Tim J. P. Hubbard, Alexey G. Murzin, Steven E. Brenner, Cyrus Chothia posted to database scop structure by kgutwin on 2009-01-02 01:01:15 as along with 6 people timhubbard yuslinaz cen4ik iakes rabio cjeans
	PQS: a protein quaternary structure file server. [My Copy] Trends Biochem Sci, Vol. 23, No. 9. (September 1998), pp. 358-361. by K. Henrick, J. M. Thornton posted to database pqs structure by kgutwin on 2009-01-02 00:59:28 as along with 3 people medic0747 bicko chad_davis
	Socket: a program for identifying and analysing coiled-coil motifs within protein structures. [My Copy] Journal of molecular biology, Vol. 307, No. 5. (13 April 2001), pp. 1427-1450. by J. Walshaw, D. N. Woolfson posted to coiled-coils socket structure by kgutwin on 2008-12-30 17:05:07 as along with 5 people TLVincent oteri martainn gbartbristol ca3295
	A Historical Perspective of Template-Based Protein Structure Prediction [My Copy] Protein Structure Prediction (2008), pp. 3-42. by Jun-Tao Guo, Kyle Ellrott, Ying Xu posted to modeling predictions review structure threading by kgutwin on 2008-11-20 20:34:44 as
	Progress and challenges in protein structure prediction [My Copy] Current Opinion in Structural Biology In Nucleic acids / Sequences and topology, Vol. 18, No. 3. (June 2008), pp. 342-348. by Y ZHANG, posted to predictions review structure threading by kgutwin on 2008-11-20 20:23:19 as along with 12 people dfdong saunders ameetsoni rodrigofaccioli jperkins newton1234 hadesnumb chad_davis barry phoenixzxl marck zwang
	CC+: a relational database of coiled-coil structures. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D315-322. by Oliver D. Testa, Efrosini Moutevelis, Derek N. Woolfson posted to coiled-coils litreview2008 socket structure by kgutwin on 2008-11-19 22:17:21 as along with 4 people TLVincent krapnik Zoltan_Barczikay patrickking

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coiled-coils	138
predictions	75
post-defense	70
structure	64
bzip	41
statpot	37
review	33
trimer	33
interactions	30
historical	27
antiparallel	23
newfams-evidence	21
design	20
tropomyosin	17
residue-preferences	17
keating-import	16
dimer	16
litreview2008	16
oakley-import	15
database	13
analysis	13
trigger-sequence	12
domains	12
need-pdf	11
potential	11
secondary-structure	10
expt-evidence	10
helix-packing	9
specificity	9
litreview2009	9
crick-param	8
ori-dep-potential	8
multicoil	8
paircoil	8
rosetta	8
coupling-energy	8
docking	8
modeling	7
myosin	7
electrostatics	7
dfire	7
alignment	7
threading	6
socket	6
nemo	6
kinase	6
folding	6
snare	6
keratin	6
reference-state	6
svm	5
newcoils	5
ab-initio	5
genome	5
families	5
zincfinger	4
ism	4
chou-fasman	4
homodimer	4
collagen	4
interfaces	4
scaffold	3
tpr	3
molecular-mechanics	3
laminin	3
cluster-expansion	3
sh3	3
tenascin	3
reduced	3
miyazawa-jernigan	3
fiber-diffraction	3
multiprospector	3
contact	3
sequence	3
homologs	3
sindbis-virus	3
tetramer	3
marcoil	3
profiles	3
hemagglutinin	3
learncoil	3
right-handed	3
correlations	3
pdz	3
heterodimer	3
gor	2
spc110p	2
hmm	2
hsfbp1	2
electron-microscopy	2
multiprot	2
chemistry	2
single-alpha-helix	2
mlp	2
blast	2
campbd	2
kinetics	2
opus	2
charmm	2
fibrinogen	2
short	2
tasser	2
interprets	2
theoretical	2
astrin	2
npc	2
rational-model	2
motions	2
spb	2
lattice-model	2
spectrin	2
sh2	2
knobs-into-holes	2
casp	2
dope	2
numa	2
prediction	2
spot-array	1
model-forms	1
information-theory	1
ser-rs	1
calmodulin	1
fer	1
atpase	1
divergence	1
clustering	1
homology-model	1
uniref	1
yeast-2-hybrid	1
vbp	1
l1orf1	1
hsf	1
lattice	1
smc	1
classy	1
clashes	1
orientation	1
p-het	1
clpb	1
psipred	1
substitution-matrix	1
amber	1
chromophore	1
fusion	1
residue-composition	1
pqs	1
ramachandran	1
cortexillin	1
gp41	1
fractal	1
snv_n	1
systers	1
hairpin	1
tsp1	1
hydrogen-bond	1
foldx	1
esm	1
complex	1
eef1	1
structure-aln	1
hpc	1
solvent	1
brca1	1
arabidopsis	1
dynein	1
matrilin	1
genbank	1
intramolecular	1
dna	1
binding	1
predicted-cc	1
microarray	1
functions	1
rop	1
biojava	1
heptad-shift	1
minimization	1
ultra-high-xtal	1
all-atom	1
ef-hand	1
scop	1
rna	1

kgutwin's structure [64 articles] Export

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