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kieran101's library [230 articles]

Recent papers added to kieran101's library.
  • The Human Immunodeficiency Virus Type 1 Vif Protein Reduces Intracellular Expression and Inhibits Packaging of APOBEC3G (CEM15), a Cellular Inhibitor of Virus Infectivity
    J. Virol., Vol. 77, No. 21. (1 November 2003), pp. 11398-11407.
    by Sandra Kao, Mohammad A Khan, Eri Miyagi, Ron Plishka, Alicia Buckler-White, Klaus Strebel
    posted to vif apobec by kieran101 on 2008-07-08 20:30:33 as **
  • Further Investigation of Simian Immunodeficiency Virus Vif Function in Human Cells
    J. Virol., Vol. 78, No. 21. (1 November 2004), pp. 12041-12046.
    by Nathan C Gaddis, Ann M Sheehy, Muneer K Ahmad, Chad M Swanson, Kate N Bishop, Brigitte E Beer, Preston A Marx, Feng Gao, Frederic Bibollet-Ruche, Beatrice H Hahn, Michael H Malim
    posted to vif by kieran101 on 2008-07-08 20:16:30 as **
  • From the editors
    Nat Rev Genet, Vol. 7, No. 10. (October 2006), pp. 737-737.
    posted to techniques modelling by kieran101 on 2008-07-08 13:53:52 as **
  • A tutorial on statistical methods for population association studies
    Nature Reviews Genetics, Vol. 7, No. 10., pp. 781-791.
    by David J Balding
    posted to techniques modelling by kieran101 on 2008-07-08 13:47:20 as ** along with 6 people and 1 group jyuh jermth giovanni joepickrell dbgrant jo_davies GeschwindLab
  • HIV-1 subtype B protease and reverse transcriptase amino acid covariation.
    PLoS Comput Biol, Vol. 3, No. 5. (11 May 2007)
    by SY Rhee, TF Liu, SP Holmes, RW Shafer
    posted to techniques rt protease modelling by kieran101 on 2008-07-08 11:47:17 as ** along with 1 person cjeans
  • LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.
    The EMBO journal, Vol. 19, No. 21. (1 November 2000), pp. 5720-5728.
    by Y Kabeya, N Mizushima, T Ueno, A Yamamoto, T Kirisako, T Noda, E Kominami, Y Ohsumi, T Yoshimori
    posted to techniques autophagy by kieran101 on 2008-07-08 09:49:55 as **
  • How to interpret LC3 immunoblotting.
    Autophagy, Vol. 3, No. 6. (c 2007), pp. 542-545.
    by N Mizushima, T Yoshimori
    posted to techniques autophagy by kieran101 on 2008-07-08 09:35:25 as **
  • LC3 and Autophagy.
    Methods in molecular biology (Clifton, N.J.), Vol. 445 (2008), pp. 77-88.
    by I Tanida, T Ueno, E Kominami
    posted to techniques autophagy by kieran101 on 2008-07-08 09:34:14 as **
  • Lysosomal turnover, but not a cellular level, of endogenous LC3 is a marker for autophagy.
    Autophagy, Vol. 1, No. 2. (July 2005), pp. 84-91.
    by I Tanida, N Minematsu-Ikeguchi, T Ueno, E Kominami
    posted to techniques autophagy by kieran101 on 2008-07-08 09:32:56 as **
  • A novel assay to study autophagy: regulation of autophagosome vacuole size by amino acid deprivation.
    Journal of cell science, Vol. 114, No. Pt 20. (October 2001), pp. 3619-3629.
    by DB Munafó, MI Colombo
    posted to techniques autophagy by kieran101 on 2008-07-08 09:30:53 as **
  • Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?
    Protein Eng, Vol. 7, No. 3. (March 1994), pp. 349-358.
    by IN Shindyalov, NA Kolchanov, C Sander
    posted to structure modelling by kieran101 on 2008-07-08 09:24:27 as ** along with 2 people gbart nirfriedman
  • Utilizing flow cytometry to monitor autophagy in living mammalian cells.
    Autophagy, Vol. 4, No. 5. (t 2008), pp. 621-628.
    by E Shvets, E Fass, Z Elazar
    posted to techniques autophagy by kieran101 on 2008-07-08 09:21:33 as **
  • Molecular Analysis of HIV Type 1 vif Sequences from Cape Town, South Africa
    AIDS Research and Human Retroviruses, Vol. 0, No. 0. (0), pp. 1-4.
    by Graeme B Jacobs, Markus Nistal, Annette Laten, Estrelita J van Rensburg, Axel Rethwilm, Wolfgang Preiser, Jochen Bodem, Susan Engelbrecht
    posted to vif by kieran101 on 2008-07-04 14:12:42 as **
  • Analysis of Natural Sequence Variation and Covariation in Human Immunodeficiency Virus Type-1 Integrase
    J. Virol. (2 July 2008), JVI.01535-07.
    by Richard E Myers, Deenan Pillay
    posted to modelling integrase by kieran101 on 2008-07-04 14:02:14 as **
  • Covariation of amino acid positions in HIV-1 protease.
    Virology, Vol. 314, No. 2. (30 September 2003), pp. 536-548.
    by NG Hoffman, CA Schiffer, R Swanstrom
    posted to protease modelling by kieran101 on 2008-07-02 14:27:45 as **
  • Distinguishing functional amino acid covariation from background linkage disequilibrium in HIV protease and reverse transcriptase.
    PLoS ONE, Vol. 2, No. 8. (2007)
    by Q Wang, C Lee
    posted to modelling by kieran101 on 2008-07-02 14:24:05 as **
  • A Dirichlet process model for detecting positive selection in protein-coding DNA sequences.
    Proc Natl Acad Sci U S A, Vol. 103, No. 16. (18 April 2006), pp. 6263-6268.
    by JP Huelsenbeck, S Jain, SW Frost, SL Pond
    posted to modelling by kieran101 on 2008-06-27 11:37:45 as ** along with 2 people ejeffery dmc
  • HIV-1 Vif, APOBEC, and intrinsic immunity
    Retrovirology, Vol. 5 (24 June 2008), 51.
    by Ritu Goila-Gaur, Klaus Strebel
    posted to vif review apobec by kieran101 on 2008-06-27 10:09:41 as **
  • Retroviral restriction by APOBEC proteins.
    Nat Rev Immunol, Vol. 4, No. 11. (November 2004), pp. 868-877.
    by RS Harris, MT Liddament
    posted to review apobec by kieran101 on 2008-06-25 16:44:26 as ** along with 1 person madhadron
  • Coronavirus Replication Complex Formation Utilizes Components of Cellular Autophagy
    J. Biol. Chem., Vol. 279, No. 11. (12 March 2004), pp. 10136-10141.
    by Erik Prentice, Gray W Jerome, Tamotsu Yoshimori, Noboru Mizushima, Mark R Denison
    posted to autophagy by kieran101 on 2008-06-24 17:30:27 as **
  • Subversion of Cellular Autophagosomal Machinery by RNA Viruses
    PLoS Biology, Vol. 3, No. 5. (1 May 2005), e156.
    by William T Jackson, Thomas H Giddings, Matthew P Taylor, Sara Mulinyawe, Marlene Rabinovitch, Ron R Kopito, Karla Kirkegaard
    posted to autophagy by kieran101 on 2008-06-24 17:30:15 as **
  • Apoptosis and autophagy: regulatory connections between two supposedly different processes.
    Apoptosis : an international journal on programmed cell death, Vol. 13, No. 1. (January 2008), pp. 1-9.
    by A Thorburn
    posted to review autophagy apoptosis by kieran101 on 2008-06-24 14:39:30 as **
  • To die or not to die: that is the autophagic question.
    Current molecular medicine, Vol. 8, No. 2. (March 2008), pp. 78-91.
    by L Galluzzi, JM Vicencio, O Kepp, E Tasdemir, MC Maiuri, G Kroemer
    posted to review autophagy by kieran101 on 2008-06-24 14:27:31 as **
  • The molecular machinery of autophagy: unanswered questions
    J Cell Sci, Vol. 118, No. 1. (1 January 2005), pp. 7-18.
    by Daniel J Klionsky
    posted to autophagy by kieran101 on 2008-06-24 12:00:41 as **
  • Molecular machinery of autophagosome formation in yeast, Saccharomyces cerevisiae.
    FEBS letters, Vol. 581, No. 11. (22 May 2007), pp. 2156-2161.
    by K Suzuki, Y Ohsumi
    posted to autophagy by kieran101 on 2008-06-24 12:00:24 as **
  • Evidence for a newly discovered cellular anti-HIV-1 phenotype.
    Nature medicine, Vol. 4, No. 12. (December 1998), pp. 1397-1400.
    by JH Simon, NC Gaddis, RA Fouchier, MH Malim
    posted to apobec by kieran101 on 2008-06-24 11:46:13 as **
  • DNA deamination mediates innate immunity to retroviral infection.
    Cell, Vol. 113, No. 6. (13 June 2003), pp. 803-809.
    by RS Harris, KN Bishop, AM Sheehy, HM Craig, SK Petersen-Mahrt, IN Watt, MS Neuberger, MH Malim
    posted to apobec by kieran101 on 2008-06-24 11:45:57 as ** along with 1 person ffranca
  • Dynamic binding orientations direct activity of HIV reverse transcriptase
    Nature, Vol. 453, No. 7192. (May 2008), pp. 184-189.
    by Elio A Abbondanzieri, Gregory Bokinsky, Jason W Rausch, Jennifer X Zhang, Stuart F Le Grice, Xiaowei Zhuang
    posted to rt by kieran101 on 2008-06-23 16:23:20 as ** along with 2 people and 1 group cactus wsjames Oxford Virology
  • Human immunodeficiency virus type-1 infection inhibits autophagy.
    AIDS (London, England), Vol. 22, No. 6. (30 March 2008), pp. 695-699.
    by D Zhou, SA Spector
    posted to autophagy by kieran101 on 2008-06-20 16:58:34 as **
  • A lentiviral microRNA-based system for single-copy polymerase II-regulated RNA interference in mammalian cells.
    Proc Natl Acad Sci U S A, Vol. 102, No. 37. (13 September 2005), pp. 13212-13217.
    by F Stegmeier, G Hu, RJ Rickles, GJ Hannon, SJ Elledge
    posted to techniques by kieran101 on 2008-06-11 10:12:10 as ** along with 3 people jyuh mgantier tibbitts
  • Second-generation shRNA libraries covering the mouse and human genomes
    Nature Genetics, Vol. 37, No. 11. (02 October 2005), pp. 1281-1288.
    by Jose M Silva, Mamie Z Li, Ken Chang, Wei Ge, Michael C Golding, Richard J Rickles, Despina Siolas, Guang Hu, Patrick J Paddison, Michael R Schlabach, Nihar Sheth, Jeff Bradshaw, Julia Burchard, Amit Kulkarni, Guy Cavet, Ravi Sachidanandam, Richard W Mccombie, Michele A Cleary, Stephen J Elledge, Gregory J Hannon
    posted to techniques by kieran101 on 2008-06-11 10:10:49 as ** along with 2 people textoris timyu
  • The APOBEC-2 crystal structure and functional implications for the deaminase AID
    Nature (24 December 2006)
    by Courtney Prochnow, Ronda Bransteitter, Michael G Klein, Myron F Goodman, Xiaojiang S Chen
    posted to structure by kieran101 on 2008-06-09 12:37:50 as ** along with 1 person ffranca
  • Compensatory evolution in RNA secondary structures increases substitution rate variation among sites
    Mol Biol Evol (4 June 2008), msn130.
    by Jennifer L Knies, Kristen K Dang, Todd J Vision, Noah G Hoffman, Ronald Swanstrom, Christina L Burch
    posted to rna modelling by kieran101 on 2008-06-09 10:34:59 as ** along with 1 person marck
  • Assembly with the Cul4A-DDB1-DCAF1 ubiquitin ligase protects HIV-1 Vpr from proteasomal degradation
    J. Biol. Chem. (4 June 2008), M710298200.
    by Erwann Le Rouzic, Marina Morel, Diana Ayinde, Nadia Belaidouni, Justine Letienne, Catherine Transy, Florence Margottin-Goguet
    posted to vpr ubiquitin by kieran101 on 2008-06-09 10:34:38 as **
  • Autologous Neutralizing Humoral Immunity and Evolution of the Viral Envelope in the Course of Subtype B Human Immunodeficiency Virus Type 1 Infection
    J. Virol. (4 June 2008), JVI.00757-08.
    by Evelien M Bunnik, Linaida Pisas, Ad C van Nuenen, Hanneke Schuitemaker
    posted to antibodies by kieran101 on 2008-06-09 10:33:57 as **
  • Dendritic Cells Preferentially Transfer CXCR4 using Human Immunodeficiency Virus Type 1 Variants to CD4+ T Lymphocytes in trans
    J. Virol. (4 June 2008), JVI.00245-08.
    by Thijs van Montfort, Adri A Thomas, Georgios Pollakis, William A Paxton
    posted to infection by kieran101 on 2008-06-09 10:33:41 as **
  • A Competition Model for the Upregulation of the MHC-II Associated Invariant Chain by HIV-1 Nef
    J. Virol. (4 June 2008), JVI.02668-07.
    by Richard S Mitchell, Rittik Chaudhuri, Wolf O Lindwasser, Kristie A Tanaka, David Lau, Rudi Murillo, Juan S Bonifacino, John C Guatelli
    posted to nef by kieran101 on 2008-06-09 10:33:03 as **
  • Closed chromatin architecture is induced by an RNA duplex targeting the HIV-1 promoter region
    J. Biol. Chem. (2 June 2008), M709651200.
    by Kazuo Suzuki, Torsten Juelich, Heidi Lim, Takaomi Ishida, Toshiki Watanebe, David A Cooper, Sudha Rao, Anthony D Kelleher
    posted to techniques by kieran101 on 2008-06-09 10:32:48 as **
  • Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G
    Nature (20 February 2008)
    by Kuan-Ming Chen, Elena Harjes, Phillip J Gross, Amr Fahmy, Yongjian Lu, Keisuke Shindo, Reuben S Harris, Hiroshi Matsuo
    posted to structure apobec by kieran101 on 2008-06-04 13:16:47 as ** along with 1 person and 2 groups wsjames Oxford Virology Malim Lab
  • Biochemical Activities of Highly Purified, Catalytically Active Human APOBEC3G: Correlation with Antiviral Effect
    J. Virol., Vol. 80, No. 12. (15 June 2006), pp. 5992-6002.
    by Yasumasa Iwatani, Hiroaki Takeuchi, Klaus Strebel, Judith G Levin
    posted to apobec by kieran101 on 2008-06-04 12:12:29 as **
  • Vibrational Markovian modelling of footprints after the interaction of antibiotics with the packaging region of HIV type 1.
    Bulletin of mathematical biology, Vol. 65, No. 6. (November 2003), pp. 991-1002.
    by HG Díaz, RR de Armas, R Molina
    posted to modelling by kieran101 on 2008-05-29 16:29:23 as **
  • Sequence-specific interaction between HIV-1 matrix protein and viral genomic RNA revealed by in vitro genetic selection.
    RNA (New York, N.Y.), Vol. 7, No. 4. (April 2001), pp. 576-584.
    by P Purohit, S Dupont, M Stevenson, MR Green
    posted to rna gag by kieran101 on 2008-05-29 16:10:02 as **
  • Species-Specific Exclusion of APOBEC3G from HIV-1 Virions by Vif
    Cell, Vol. 114, No. 1. (11 July 2003), pp. 21-31.
    by Roberto Mariani, Darlene Chen, Bärbel Schröfelbauer, Francisco Navarro, Renate König, Brooke Bollman, Carsten Münk, Henrietta Nymark-Mcmahon, Nathaniel R Landau
    posted to vif apobec by kieran101 on 2008-05-29 15:58:40 as **
  • Proteasomal degradation of TRIM5alpha during retrovirus restriction.
    PLoS pathogens, Vol. 4, No. 5. (May 2008)
    by CJ Rold, C Aiken
    posted to trim by kieran101 on 2008-05-28 17:20:53 as **
  • A single amino acid substitution in human APOBEC3G antiretroviral enzyme confers resistance to HIV-1 virion infectivity factor-induced depletion.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 15. (13 April 2004), pp. 5652-5657.
    by H Xu, ES Svarovskaia, R Barr, Y Zhang, MA Khan, K Strebel, VK Pathak
    posted to vif apobec by kieran101 on 2008-05-28 17:19:25 as **
  • Mass spectrometry analysis of HIV-1 Vif reveals an increase in ordered structure upon oligomerization in regions necessary for viral infectivity.
    Proteins, Vol. 69, No. 2. (1 November 2007), pp. 270-284.
    by JR Auclair, KM Green, S Shandilya, JE Evans, M Somasundaran, CA Schiffer
    posted to vif structure by kieran101 on 2008-05-28 17:16:58 as **
  • Comparison of Cellular Ribonucleoprotein Complexes Associated with the APOBEC3F and APOBEC3G Antiviral Proteins
    J. Virol., Vol. 82, No. 11. (1 June 2008), pp. 5636-5642.
    by Sarah Gallois-Montbrun, Rebecca K Holmes, Chad M Swanson, Mireia Fernandez-Ocana, Helen L Byers, Malcolm A Ward, Michael H Malim
    posted to rna apobec by kieran101 on 2008-05-28 17:12:25 as **
  • The HIV-1 Vif PPLP motif is necessary for human APOBEC3G binding and degradation.
    Virology (20 May 2008)
    by John P P Donahue, Michael L L Vetter, Nizar A A Mukhtar, Richard T T D'Aquila
    posted to vif apobec by kieran101 on 2008-05-28 13:51:05 as **
  • Imaging the biogenesis of individual HIV-1 virions in live cells
    Nature (25 May 2008)
    by Nolwenn Jouvenet, Paul D Bieniasz, Sanford M Simon
    posted to assembly by kieran101 on 2008-05-28 13:50:25 as ** along with 3 people xingxu hryk lechristophe
  • Identification of calcium-modulating cyclophilin ligand as a human host restriction to HIV-1 release overcome by Vpu.
    Nature medicine (25 May 2008)
    by Vasundhara Varthakavi, Ellen Heimann-Nichols, Rita M M Smith, Yuehui Sun, Richard J J Bram, Showkat Ali, Jeremy Rose, Lingmei Ding, Paul Spearman
    posted to vpu cyclophilins by kieran101 on 2008-05-28 13:47:43 as **
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