kieran101's computation [20 articles] Export

Recent papers added to kieran101's library classified by the tag computation. You can also see everyone's computation.

	Evolutionary Trajectories of Primate Genes Involved in HIV Pathogenesis [My Copy] Mol Biol Evol, Vol. 26, No. 12. (1 December 2009), pp. 2865-2875. by Millan Ortiz, Nicolas Guex, Etienne Patin, et al.Olivier Martin, Ioannis Xenarios, Angela Ciuffi, Lluis Quintana-Murci, Amalio Telenti posted to computation by kieran101 on 2009-09-15 17:42:55 as along with 2 people djkt memerman
	Balancing reversion of CTL and neutralizing antibody escape mutations within HIV-1 Env upon transmission. [My Copy] Journal of virology (10 June 2009) by Viv Peut, Shahan Campbell, Adriana Gaeguta, et al.Rob J. Center, Kim Wilson, Sheilajen Alcantara, Caroline S. Fernandez, Damian F. Purcell, Stephen J. Kent posted to computation ctl by kieran101 on 2009-07-02 13:08:38 as
	Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees [My Copy] Science, Vol. 324, No. 5934. (19 June 2009), pp. 1561-1564. by Kevin Liu, Sindhu Raghavan, Serita Nelesen, C. Randal Linder, Tandy Warnow posted to computation techniques by kieran101 on 2009-06-30 15:58:22 as along with 26 people and 4 groups gjuggler parnell kinestetika robertrentzsch xianjun gdb jbhiatt stajich operon biomcgary zwang michaelbarton vingron tatman303 hryk lizbiogen pkonings ppgardne dokky aprasad timflutre inquil TRHvidsten djkt fenghezi phoenixzxl Orengo Group Journal Picks Mycology Journal picks iSEEM
	Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection. [My Copy] The Journal of experimental medicine, Vol. 206, No. 6. (8 June 2009), pp. 1273-1289. by J. F. Salazar-Gonzalez, M. G. Salazar, B. F. Keele, et al.G. H. Learn, E. E. Giorgi, H. Li, J. M. Decker, S. Wang, J. Baalwa, M. H. Kraus, N. F. Parrish, K. S. Shaw, M. B. Guffey, K. J. Bar, K. L. Davis, C. Ochsenbauer-Jambor, J. C. Kappes, M. S. Saag, M. S. Cohen, J. Mulenga, C. A. Derdeyn, S. Allen, E. Hunter, M. Markowitz, P. Hraber, A. S. Perelson, T. Bhattacharya, B. F. Haynes, B. T. Korber, B. H. Hahn, G. M. Shaw posted to computation infection by kieran101 on 2009-06-29 11:03:53 as along with 1 person nparrish
	The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection. [My Copy] The Journal of experimental medicine, Vol. 206, No. 6. (8 June 2009), pp. 1253-1272. by Nilu Goonetilleke, Michael K. Liu, Jesus F. Salazar-Gonzalez, et al.Guido Ferrari, Elena Giorgi, Vitaly V. Ganusov, Brandon F. Keele, Gerald H. Learn, Emma L. Turnbull, Maria G. Salazar, Kent J. Weinhold, Stephen Moore, CHAVI Clinical Core B, Norman Letvin, Barton F. Haynes, Myron S. Cohen, Peter Hraber, Tanmoy Bhattacharya, Persephone Borrow, Alan S. Perelson, Beatrice H. Hahn, George M. Shaw, Bette T. Korber, Andrew J. McMichael posted to computation by kieran101 on 2009-06-29 10:48:39 as along with 4 people rpsimmonsin nfparrish peterbgilbert nparrish
	HIV Evolution in Early Infection: Selection Pressures, Patterns of Insertion and Deletion, and the Impact of APOBEC [My Copy] PLoS Pathog, Vol. 5, No. 5. (8 May 2009), e1000414. by Natasha Wood, Tanmoy Bhattacharya, Brandon F. Keele, et al.Elena Giorgi, Michael Liu, Brian Gaschen, Marcus Daniels, Guido Ferrari, Barton F. Haynes, Andrew Mcmichael, George M. Shaw, Beatrice H. Hahn, Bette Korber, Cathal Seoighe posted to apobec computation evolution by kieran101 on 2009-05-08 10:52:50 as along with 1 person and 1 group wsjames Oxford Virology
	Accelerated Adaptive Evolution on a Newly Formed X Chromosome [My Copy] PLoS Biology, Vol. 7, No. 4. (1 April 2009), e82. by Doris Bachtrog, Jeffrey D. Jensen, Zhi Zhang posted to computation by kieran101 on 2009-04-21 12:10:59 as along with 3 people and 2 groups polivares stajich djkt BergmanLab Mycology
	Advances in RNA Structure Prediction from Sequence: New Tools for Generating Hypotheses about Viral RNA Structure-Function Relationships [My Copy] J. Virol., Vol. 83, No. 13. (1 July 2009), pp. 6326-6334. by Susan J. Schroeder posted to computation techniques by kieran101 on 2009-04-21 11:28:05 as along with 3 people onufriev samgj carlosjavierna
	Network Features of the Mammalian Circadian Clock [My Copy] PLoS Biol, Vol. 7, No. 3. (10 March 2009), e1000052. by Julie E. Baggs, Tom S. Price, Luciano Ditacchio, Satchidananda Panda, Garret A. Fitzgerald, John B. Hogenesch posted to computation by kieran101 on 2009-04-01 13:44:04 as along with 4 people newgene carlk sherdim biomcgary
	Alignment and Prediction of cis-Regulatory Modules Based on a Probabilistic Model of Evolution [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000299. by Xin He, Xu Ling, Saurabh Sinha posted to computation by kieran101 on 2009-04-01 13:21:34 as along with 9 people roys megraw lusk TRHvidsten nuin djkt mhamada maximilianh druvus
	SYSTEMS BIOLOGY: Attractors and Democratic Dynamics [My Copy] Science, Vol. 323, No. 5917. (20 February 2009), pp. 1016-1017. by Yaneer Bar-Yam, Dion Harmon, Benjamin de Bivort posted to computation by kieran101 on 2009-02-23 13:27:22 as along with 6 people mjoach davidcsterratt rdiaz agomez jjray renatomilani
	Protein kinase R reveals an evolutionary model for defeating viral mimicry [My Copy] Nature (30 November 2008) by Nels C. Elde, Stephanie J. Child, Adam P. Geballe, Harmit S. Malik posted to computation techniques by kieran101 on 2009-01-26 09:24:40 as along with 2 people and 1 group neils djkt iSEEM
	A bioinformatics search pipeline, RNA2DSearch, identifies RNA localization elements in Drosophila retrotransposons [My Copy] RNA, Vol. 15, No. 2. (February 2009), pp. 200-207. by Russell S. Hamilton, Eve Hartswood, Georgia Vendra, et al.Cheryl Jones, Veronique Van De Bor, David Finnegan, Ilan Davis posted to computation techniques by kieran101 on 2009-01-21 11:54:36 as along with 2 people operon mhamada
	Codon bias and heterologous protein expression [My Copy] Trends in Biotechnology, Vol. 22, No. 7. (July 2004), pp. 346-353. by Claes Gustafsson, Sridhar Govindarajan, Jeremy Minshull posted to computation techniques by kieran101 on 2009-01-12 16:23:05 as along with 3 people antonkratz GustavoLacerda eghorani
	A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types [My Copy] Molecular Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350. by Olivier Elemento, Noam Slonim, Saeed Tavazoie posted to computation techniques by kieran101 on 2009-01-12 12:43:33 as along with 17 people and 2 groups cerca ilyashl TRHvidsten leelarcombe ana brant cwbrown aswin cjeans zwang cabbagezs nklee maximilianh idonaldson sb_journal_club kristen barwil EisenLab Motif Discovery
	HIV-1 coreceptor usage prediction without multiple alignments: an application of string kernels [My Copy] Retrovirology, Vol. 5 (04 December 2008), 110. by Sebastien, Jacques Corbeil posted to computation by kieran101 on 2008-12-12 14:39:49 as
	Estimating the stoichiometry of HIV entry. [My Copy] Journal of virology (19 November 2008) by Carsten Magnus, Peter Rusert, Sebastian Bonhoeffer, Alexandra Trkola, Roland R R. Regoes posted to computation by kieran101 on 2008-12-04 12:31:28 as along with 2 people and 1 group memerman wsjames Oxford Virology
	Systematic discovery of regulatory motifs in human promoters and 3[prime] UTRs by comparison of several mammals [My Copy] Nature, Vol. aop, No. current. (27 February 2005) by Xiaohui Xie, Jun Lu, E. J. Kulbokas, et al.Todd R. Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S. Lander, Manolis Kellis posted to computation techniques by kieran101 on 2008-11-17 16:55:13 as along with 28 people and 4 groups Dulce wowalz maximilianh_otx hagechouchin443 sterovetta snuppepuppan BioGeek briann jtextori tmmurali okarsligil jfr balajis lyongu eckart_bindewald mtagaya adepace fisherp nickluscombe panetebrother smiddha franklin oscarluoinau heliopais ale emptyhb maralena mariakmejia Bioinformatics EisenLab microRNA EBI-regulation
	Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. [My Copy] Nature, Vol. 450, No. 7167. (8 November 2007), pp. 219-232. by A. Stark, M. F. Lin, P. Kheradpour, et al.J. S. Pedersen, L. Parts, J. W. Carlson, M. A. Crosby, M. D. Rasmussen, S. Roy, A. N. Deoras, J. G. Ruby, J. Brennecke, , , E. Hodges, A. S. Hinrichs, A. Caspi, B. Paten, S. W. Park, M. V. Han, M. L. Maeder, B. J. Polansky, B. E. Robson, S. Aerts, J. van Helden, B. Hassan, D. G. Gilbert, D. A. Eastman, M. Rice, M. Weir, M. W. Hahn, Y. Park, C. N. Dewey, L. Pachter, W. J. Kent, D. Haussler, E. C. Lai, D. P. Bartel, G. J. Hannon, T. C. Kaufman, M. B. Eisen, A. G. Clark, D. Smith, S. E. Celniker, W. M. Gelbart, M. Kellis posted to computation by kieran101 on 2008-11-17 16:54:37 as along with 21 people and 3 groups heliopais anphony Neeperando pradiptaray rouault druvus operon tmmurali djkt timflutre stajich lp2 cabbagezs nklee hpaces roys caseybrown gjuggler shuzhens PetrovLab cisevol microRNA Mycology Drosophila-Genetics-Genomics-2008
	A New Statistical Method for Haplotype Reconstruction from Population Data [My Copy] The American Journal of Human Genetics, Vol. 68, No. 4. (April 2001), pp. 978-989. by M. Stephens, N. Smith, P. Donnelly posted to computation by kieran101 on 2008-09-15 11:07:06 as along with 4 people tjtaylor dakelley ekostem misonneh

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apobec	131
techniques	66
vif	56
autophagy	52
review	35
rna	26
structure	23
assembly	22
ubiquitin	21
computation	20
modelling	17
immunology	16
rt	16
cyclophilins	13
phylogenetics	12
trim	11
gag	10
infection	10
treatment	9
a3h	8
integrase	7
sequencing	7
vpr	7
apoptosis	5
nef	5
tat	5
lipids	3
protease	3
resistance	3
retrotransposons	3
sirna	3
stress_granules	3
vpu	3
antibodies	2
budding	2
chaperones	2
env	2
latency	2
mirna	2
nc	2
splicing	2
tar	2
vpx	2
aid	1
ctl	1
entry	1
evolution	1
genomics	1
hepatitis	1
host	1
initiation	1
interferon	1
line	1
nk_cells	1
packaging	1
primer	1
rnai	1
rnaseh	1
sr_proteins	1
translation	1
trna	1
xmrv	1

kieran101's computation [20 articles] Export

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