kieran101's techniques [66 articles] Export

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	Highly Purified Human Immunodeficiency Virus Type 1 Reveals a Virtual Absence of Vif in Virions [My Copy] J. Virol., Vol. 73, No. 2. (1 February 1999), pp. 1460-1467. by Markus Dettenhofer, Xiao-Fang Yu posted to techniques by kieran101 on 2009-09-16 17:21:54 as
	Interactions of Processed Nef (58-206) with Virion Proteins of HIV Type 1 [My Copy] AIDS Research and Human Retroviruses, Vol. 20, No. 4. (April 2004), pp. 399-407. by Angela Ciuffi, Miguel Munoz, Gabriela Bleiber, et al.Manuel Favre, Francoise Stutz, Amalio Telenti, Pascal R. A. Meylan posted to rt techniques by kieran101 on 2009-07-29 15:32:51 as
	Ten Simple Rules for Choosing between Industry and Academia [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (26 June 2009), e1000388. by David B. Searls posted to techniques by kieran101 on 2009-07-01 09:27:11 as along with 36 people and 3 groups welliegirl Sergey_gerbek cyounkin Tomste Horduna aaltenburger Zephyrus CulCog thegoose Yanno timflutre tnhh PeteField MarcoAlvarez sobolevnrm Stew dbikard jasontsai casutton franklu310 chrisamiller rdiaz daveGerrard reyez neils marekrud Borelli psique kshameer gjuggler sdaehne flips ppgardne fgibson barry dullhunk Bioinformatics - CRUK Journal picks McCammon
	Measurement of HIV-1 preintegration transcription using the Rev-dependent Rev-CEM cell reveals a sizable transcribing DNA population comparable with proviral templates. [My Copy] Journal of virology (24 June 2009) by Subashini R. Iyer, Dongyang Yu, Angélique Biancotto, Leonid B. Margolis, Yuntao Wu posted to techniques by kieran101 on 2009-06-30 17:44:57 as
	Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees [My Copy] Science, Vol. 324, No. 5934. (19 June 2009), pp. 1561-1564. by Kevin Liu, Sindhu Raghavan, Serita Nelesen, C. Randal Linder, Tandy Warnow posted to computation techniques by kieran101 on 2009-06-30 15:58:22 as along with 26 people and 4 groups gjuggler parnell kinestetika robertrentzsch xianjun gdb jbhiatt stajich operon biomcgary zwang michaelbarton vingron tatman303 hryk lizbiogen pkonings ppgardne dokky aprasad timflutre inquil TRHvidsten djkt fenghezi phoenixzxl Orengo Group Journal Picks Mycology Journal picks iSEEM
	CD44 MicroBeads accelerate HIV-1 infection in T cells [My Copy] Virology, Vol. 388, No. 2. (05 June 2009), pp. 294-304. by Valeri H. Terry, Ian C. Johnston, Celsa A. Spina posted to techniques by kieran101 on 2009-06-30 15:25:39 as
	Characterization of the Behavior of Functional Viral Genomes during the Early Steps of Human Immunodeficiency Virus Type 1 Infection [My Copy] J. Virol., Vol. 83, No. 15. (1 August 2009), pp. 7524-7535. by Vanessa Arfi, Julia Lienard, Xuan-Nhi Nguyen, et al.Gregory Berger, Dominique Rigal, Jean-Luc Darlix, Andrea Cimarelli posted to integrase rt techniques by kieran101 on 2009-06-10 10:31:58 as along with 2 people and 1 group memerman wsjames Oxford Virology
	Intracellular interactions between APOBEC3G, RNA, and HIV-1 Gag: APOBEC3G multimerization is dependent on its association with RNA [My Copy] Retrovirology, Vol. 6 (04 June 2009), 56. by Yeshitila Friew, Vitaly Boyko, Wei-Shau Hu, Vinay Pathak posted to apobec gag rna techniques by kieran101 on 2009-06-10 10:24:35 as
	T cell stimulation and expansion using anti-CD3/CD28 beads [My Copy] Journal of Immunological Methods, Vol. 275, No. 1-2. (01 April 2003), pp. 251-255. by A. Trickett posted to techniques by kieran101 on 2009-05-08 10:05:26 as
	Human Immunodeficiency Virus Type 1 Fitness Is a Determining Factor in Viral Rebound and Set Point in Chronic Infection [My Copy] J. Virol., Vol. 77, No. 24. (15 December 2003), pp. 13146-13155. by Alexandra Trkola, Herbert Kuster, Christine Leemann, et al.Claudia Ruprecht, Beda Joos, Amalio Telenti, Bernhard Hirschel, Rainer Weber, Sebastian Bonhoeffer, Huldrych F. Gunthard posted to techniques by kieran101 on 2009-04-27 18:06:24 as
	Advances in RNA Structure Prediction from Sequence: New Tools for Generating Hypotheses about Viral RNA Structure-Function Relationships [My Copy] J. Virol., Vol. 83, No. 13. (1 July 2009), pp. 6326-6334. by Susan J. Schroeder posted to computation techniques by kieran101 on 2009-04-21 11:28:05 as along with 3 people onufriev samgj carlosjavierna
	Real-time quantitative PCR for the design of lentiviral vector analytical assays. [My Copy] Gene therapy, Vol. 12 Suppl 1 (October 2005) by C. Delenda, C. Gaillard posted to techniques by kieran101 on 2009-04-20 16:47:05 as
	Protein kinase R reveals an evolutionary model for defeating viral mimicry [My Copy] Nature (30 November 2008) by Nels C. Elde, Stephanie J. Child, Adam P. Geballe, Harmit S. Malik posted to computation techniques by kieran101 on 2009-01-26 09:24:40 as along with 2 people and 1 group neils djkt iSEEM
	A bioinformatics search pipeline, RNA2DSearch, identifies RNA localization elements in Drosophila retrotransposons [My Copy] RNA, Vol. 15, No. 2. (February 2009), pp. 200-207. by Russell S. Hamilton, Eve Hartswood, Georgia Vendra, et al.Cheryl Jones, Veronique Van De Bor, David Finnegan, Ilan Davis posted to computation techniques by kieran101 on 2009-01-21 11:54:36 as along with 2 people operon mhamada
	Conserved Footprints of APOBEC3G on Hypermutated Human Immunodeficiency Virus Type 1 and Human Endogenous Retrovirus HERV-K(HML2) Sequences [My Copy] J. Virol., Vol. 82, No. 17. (1 September 2008), pp. 8743-8761. by Andrew E. Armitage, Aris Katzourakis, Tulio de Oliveira, et al.John J. Welch, Robert Belshaw, Kate N. Bishop, Beatrice Kramer, Andrew J. Mcmichael, Andrew Rambaut, Astrid K. Iversen posted to apobec techniques by kieran101 on 2009-01-19 15:59:01 as
	Codon bias and heterologous protein expression [My Copy] Trends in Biotechnology, Vol. 22, No. 7. (July 2004), pp. 346-353. by Claes Gustafsson, Sridhar Govindarajan, Jeremy Minshull posted to computation techniques by kieran101 on 2009-01-12 16:23:05 as along with 3 people antonkratz GustavoLacerda eghorani
	A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types [My Copy] Molecular Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350. by Olivier Elemento, Noam Slonim, Saeed Tavazoie posted to computation techniques by kieran101 on 2009-01-12 12:43:33 as along with 17 people and 2 groups cerca ilyashl TRHvidsten leelarcombe ana brant cwbrown aswin cjeans zwang cabbagezs nklee maximilianh idonaldson sb_journal_club kristen barwil EisenLab Motif Discovery
	Clade-Specific Differences between Human Immunodeficiency Virus Type 1 Clades B and C: Diversity and Correlations in C3-V4 Regions of gp120 [My Copy] J. Virol., Vol. 81, No. 9. (1 May 2007), pp. 4886-4891. by S. Gnanakaran, Dorothy Lang, Marcus Daniels, Tanmoy Bhattacharya, Cynthia A. Derdeyn, Bette Korber posted to techniques by kieran101 on 2009-01-05 12:45:21 as along with 1 person mishar
	Development and validation of a T7 based linear amplification for genomic DNA [My Copy] BMC Genomics, Vol. 4, No. 1. (2003) by Chih L. Liu, Stuart Schreiber, Bradley Bernstein posted to techniques by kieran101 on 2008-12-03 18:24:52 as along with 1 person polivares
	A sensitive and specific enzyme-based assay detecting HIV-1 virion fusion in primary T lymphocytes [My Copy] Nat Biotech, Vol. 20, No. 11. (November 2002), pp. 1151-1154. by Marielle Cavrois, Carlos de Noronha, Warner C. Greene posted to techniques by kieran101 on 2008-12-03 11:15:18 as
	Trex1 prevents cell-intrinsic initiation of autoimmunity. [My Copy] Cell, Vol. 134, No. 4. (22 August 2008), pp. 587-598. by D. B. Stetson, J. S. Ko, T. Heidmann, R. Medzhitov posted to rna techniques by kieran101 on 2008-12-01 10:40:24 as along with 4 people memerman leliavski ccots bpcusack
	CLIP Identifies Nova-Regulated RNA Networks in the Brain [My Copy] Science, Vol. 302, No. 5648. (14 November 2003), pp. 1212-1215. by Jernej Ule, Kirk B. Jensen, Matteo Ruggiu, Aldo Mele, Aljaz Ule, Robert B. Darnell posted to techniques by kieran101 on 2008-12-01 10:09:04 as along with 1 person cassj
	HITS-CLIP yields genome-wide insights into brain alternative RNA processing. [My Copy] Nature, Vol. 456, No. 7221. (27 November 2008), pp. 464-469. by Donny D. Licatalosi, Aldo Mele, John J. Fak, et al.Jernej Ule, Melis Kayikci, Sung Wook W. Chi, Tyson A. Clark, Anthony C. Schweitzer, John E. Blume, Xuning Wang, Jennifer C. Darnell, Robert B. Darnell posted to techniques by kieran101 on 2008-12-01 09:57:54 as along with 6 people gbloeb darnelr asg gfliustu rschulz dchughes
	CLIP: a method for identifying protein-RNA interaction sites in living cells. [My Copy] Methods (San Diego, Calif.), Vol. 37, No. 4. (December 2005), pp. 376-386. by Jernej Ule, Kirk Jensen, Aldo Mele, Robert B. Darnell posted to techniques by kieran101 on 2008-12-01 09:57:21 as along with 1 person and 1 group dpollard RockmanLab
	A translational profiling approach for the molecular characterization of CNS cell types. [My Copy] Cell, Vol. 135, No. 4. (14 November 2008), pp. 738-748. by Myriam Heiman, Anne Schaefer, Shiaoching Gong, et al.Jayms D. Peterson, Michelle Day, Keri E. Ramsey, Mayte Suárez-Fariñas, Cordelia Schwarz, Dietrich A. Stephan, D. James Surmeier, Paul Greengard, Nathaniel Heintz posted to techniques by kieran101 on 2008-11-28 12:44:13 as along with 7 people and 1 group jeremymiller gbloeb ykliu psique yun_li jbhiatt martin-novak Neuroscience
	Diverse RNA-Binding Proteins Interact with Functionally Related Sets of RNAs, Suggesting an Extensive Regulatory System [My Copy] PLoS Biol, Vol. 6, No. 10. (28 October 2008), e255. by Daniel J. Hogan, Daniel P. Riordan, André P. Gerber, Daniel Herschlag, Patrick O. Brown posted to rna techniques by kieran101 on 2008-11-19 15:14:08 as along with 5 people and 1 group leemond31 reyez stajich zwang djkt Mycology
	Ligation-anchored PCR: a simple amplification technique with single-sided specificity. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89, No. 20. (15 October 1992), pp. 9823-9825. by A. B. Troutt, M. G. McHeyzer-Williams, B. Pulendran, G. J. Nossal posted to rna techniques by kieran101 on 2008-11-17 17:52:59 as
	Systematic discovery of regulatory motifs in human promoters and 3[prime] UTRs by comparison of several mammals [My Copy] Nature, Vol. aop, No. current. (27 February 2005) by Xiaohui Xie, Jun Lu, E. J. Kulbokas, et al.Todd R. Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S. Lander, Manolis Kellis posted to computation techniques by kieran101 on 2008-11-17 16:55:13 as along with 28 people and 4 groups Dulce wowalz maximilianh_otx hagechouchin443 sterovetta snuppepuppan BioGeek briann jtextori tmmurali okarsligil jfr balajis lyongu eckart_bindewald mtagaya adepace fisherp nickluscombe panetebrother smiddha franklin oscarluoinau heliopais ale emptyhb maralena mariakmejia Bioinformatics EisenLab microRNA EBI-regulation
	Alternative isoform regulation in human tissue transcriptomes [My Copy] Nature, Vol. 456, No. 7221. (02 November 2008), pp. 470-476. by Eric T. Wang, Rickard Sandberg, Shujun Luo, et al.Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F. Kingsmore, Gary P. Schroth, Christopher B. Burge posted to genomics techniques by kieran101 on 2008-11-17 14:59:07 as along with 22 people and 1 group hzoltan ajbattle stubrown jonilaserson tonamswish frohike fenghezi heliopais zxmon21 tanglingfung xingxu felsani wimufi Zephyrus gjuggler bertelsen eluinka gfliustu vplagnol emptyhb rschulz abizar Roswell Cancer Crosstalk
	Human immunodeficiency virus type 1 spinoculation enhances infection through virus binding. [My Copy] Journal of virology, Vol. 74, No. 21. (November 2000), pp. 10074-10080. by U. O'Doherty, W. J. Swiggard, M. H. Malim posted to techniques by kieran101 on 2008-11-06 17:06:50 as
	Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. [My Copy] Genetics, Vol. 74, No. 1. (May 1973), pp. 175-195. by R. C. Lewontin, J. Krakauer posted to techniques by kieran101 on 2008-10-20 16:21:06 as
	Interrogating a High-Density SNP Map for Signatures of Natural Selection [My Copy] Genome Research, Vol. 12, No. 12. (1 December 2002), pp. 1805-1814. by Joshua M. Akey, Ge Zhang, Kun Zhang, Li Jin, Mark D. Shriver posted to techniques by kieran101 on 2008-10-20 16:16:28 as along with 5 people and 1 group Garamonfok renewang hdopazo JBEgwa01 iris42 BioinfoCIPF
	APOBEC3G cytidine deaminase inhibits retrotransposition of endogenous retroviruses [My Copy] Nature, Vol. 433, No. 7024. (27 January 2005), pp. 430-433. by Cecile Esnault, Odile Heidmann, Frederic Delebecque, et al.Marie Dewannieux, David Ribet, Allan J. Hance, Thierry Heidmann, Olivier Schwartz posted to apobec retrotransposons techniques by kieran101 on 2008-10-17 14:31:24 as
	The elimination of primer-dimer accumulation in PCR [My Copy] Nucl. Acids Res., Vol. 25, No. 16. (15 August 1997), pp. 3235-3241. by J. Brownie, S. Shawcross, J. Theaker, et al.D. Whitcombe, R. Ferrie, C. Newton, S. Little posted to techniques by kieran101 on 2008-10-09 17:55:21 as along with 2 people daforerog myrtilus
	Deciphering Human Immunodeficiency Virus Type 1 Transmission and Early Envelope Diversification by Single-Genome Amplification and Sequencing [My Copy] J. Virol., Vol. 82, No. 8. (15 April 2008), pp. 3952-3970. by Jesus F. Salazar-Gonzalez, Elizabeth Bailes, Kimmy T. Pham, et al.Maria G. Salazar, Brad M. Guffey, Brandon F. Keele, Cynthia A. Derdeyn, Paul Farmer, Eric Hunter, Susan Allen, Olivier Manigart, Joseph Mulenga, Jeffrey A. Anderson, Ronald Swanstrom, Barton F. Haynes, Gayathri S. Athreya, Bette T. Korber, Paul M. Sharp, George M. Shaw, Beatrice H. Hahn posted to techniques by kieran101 on 2008-09-19 11:51:29 as along with 1 person gjuggler
	RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts [My Copy] Nat. Protocols, Vol. 1, No. 1. (June 2006), pp. 302-307. by Jack D. Keene, Jordan M. Komisarow, Matthew B. Friedersdorf posted to techniques by kieran101 on 2008-09-18 18:14:48 as along with 1 person jonathanjacobs
	LC3, an autophagosome marker, can be incorporated into protein aggregates independent of autophagy: caution in the interpretation of LC3 localization. [My Copy] Autophagy, Vol. 3, No. 4. (g 2007), pp. 323-328. by A. Kuma, M. Matsui, N. Mizushima posted to autophagy techniques by kieran101 on 2008-07-31 12:22:17 as
	Non-autophagic GFP-LC3 puncta induced by saponin and other detergents. [My Copy] Autophagy, Vol. 3, No. 6. (c 2007), pp. 586-590. by I. A. Ciechomska, A. M. Tolkovsky posted to autophagy techniques by kieran101 on 2008-07-31 12:22:09 as
	The dynamics of autophagy visualized in live cells: from autophagosome formation to fusion with endo/lysosomes. [My Copy] Autophagy, Vol. 1, No. 1. (April 2005), pp. 23-36. by E. T. Bampton, C. G. Goemans, D. Niranjan, N. Mizushima, A. M. Tolkovsky posted to autophagy techniques by kieran101 on 2008-07-22 12:06:33 as
	THE GREEN FLUORESCENT PROTEIN [My Copy] Annual Review of Biochemistry, Vol. 67, No. 1. (1998), pp. 509-544. by Roger Y. Tsien posted to review techniques by kieran101 on 2008-07-11 20:53:42 as along with 9 people and 2 groups samjlord ts3435 fhsantanna shilpir mmcclean dark_innocent eeruowl bethbromley austin moernerlab neurolit
	From the editors [My Copy] Nat Rev Genet, Vol. 7, No. 10. (October 2006), pp. 737-737. posted to modelling techniques by kieran101 on 2008-07-08 13:53:52 as along with 1 person psique
	A tutorial on statistical methods for population association studies. [My Copy] Nature reviews. Genetics, Vol. 7, No. 10. (October 2006), pp. 781-791. by David J. Balding posted to modelling techniques by kieran101 on 2008-07-08 13:47:20 as along with 19 people and 2 groups shikin buyske ilyashl Dulcinea debasis ekostem natstreet druvus Zephyrus daforerog misonneh psique jbsaltz guhjy jermth giovanni joepickrell dbgrant jo_davies Roswell Cancer Crosstalk GeschwindLab
	HIV-1 subtype B protease and reverse transcriptase amino acid covariation. [My Copy] PLoS Comput Biol, Vol. 3, No. 5. (11 May 2007) by S. Y. Rhee, T. F. Liu, S. P. Holmes, R. W. Shafer posted to modelling protease rt techniques by kieran101 on 2008-07-08 11:47:17 as along with 1 person cjeans
	LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing. [My Copy] The EMBO journal, Vol. 19, No. 21. (1 November 2000), pp. 5720-5728. by Y. Kabeya, N. Mizushima, T. Ueno, et al.A. Yamamoto, T. Kirisako, T. Noda, E. Kominami, Y. Ohsumi, T. Yoshimori posted to autophagy techniques by kieran101 on 2008-07-08 09:49:55 as
	How to interpret LC3 immunoblotting. [My Copy] Autophagy, Vol. 3, No. 6. (c 2007), pp. 542-545. by N. Mizushima, T. Yoshimori posted to autophagy techniques by kieran101 on 2008-07-08 09:35:25 as
	LC3 and Autophagy. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 445 (2008), pp. 77-88. by I. Tanida, T. Ueno, E. Kominami posted to autophagy techniques by kieran101 on 2008-07-08 09:34:14 as
	Lysosomal turnover, but not a cellular level, of endogenous LC3 is a marker for autophagy. [My Copy] Autophagy, Vol. 1, No. 2. (July 2005), pp. 84-91. by I. Tanida, N. Minematsu-Ikeguchi, T. Ueno, E. Kominami posted to autophagy techniques by kieran101 on 2008-07-08 09:32:56 as
	A novel assay to study autophagy: regulation of autophagosome vacuole size by amino acid deprivation. [My Copy] Journal of cell science, Vol. 114, No. Pt 20. (October 2001), pp. 3619-3629. by D. B. Munafó, M. I. Colombo posted to autophagy techniques by kieran101 on 2008-07-08 09:30:53 as
	Utilizing flow cytometry to monitor autophagy in living mammalian cells. [My Copy] Autophagy, Vol. 4, No. 5. (t 2008), pp. 621-628. by E. Shvets, E. Fass, Z. Elazar posted to autophagy techniques by kieran101 on 2008-07-08 09:21:33 as
	A lentiviral microRNA-based system for single-copy polymerase II-regulated RNA interference in mammalian cells. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 37. (13 September 2005), pp. 13212-13217. by F. Stegmeier, G. Hu, R. J. Rickles, G. J. Hannon, S. J. Elledge posted to techniques by kieran101 on 2008-06-11 10:12:10 as along with 3 people guhjy mgantier tibbitts

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apobec	131
techniques	66
vif	56
autophagy	52
review	35
rna	26
structure	23
assembly	22
ubiquitin	21
computation	20
modelling	17
immunology	16
rt	16
cyclophilins	13
phylogenetics	12
trim	11
gag	10
infection	10
treatment	9
a3h	8
integrase	7
sequencing	7
vpr	7
apoptosis	5
nef	5
tat	5
lipids	3
protease	3
resistance	3
retrotransposons	3
sirna	3
stress_granules	3
vpu	3
antibodies	2
budding	2
chaperones	2
env	2
latency	2
mirna	2
nc	2
splicing	2
tar	2
vpx	2
aid	1
ctl	1
entry	1
evolution	1
genomics	1
hepatitis	1
host	1
initiation	1
interferon	1
line	1
nk_cells	1
packaging	1
primer	1
rnai	1
rnaseh	1
sr_proteins	1
translation	1
trna	1
xmrv	1

kieran101's techniques [66 articles] Export

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