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kjell's library [359 articles]

Recent papers added to kjell's library.
  • Low-Frequency Mode Activity of Heme: Femtosecond Coherence Spectroscopy of Iron Porphine Halides and Nitrophorin
    J. Am. Chem. Soc., Vol. 130, No. 30. (30 July 2008), pp. 9800-9811.
    by Minoru Kubo, Flaviu Gruia, Abdelkrim Benabbas, Alexander Barabanschikov, William R Montfort, Estelle M Maes, Paul M Champion
    posted to nonplanar nitrophorin heme by kjell on 2008-08-15 15:04:44 as **
  • Atomic level computational identification of ligand migration pathways between solvent and binding site in myoglobin.
    Proceedings of the National Academy of Sciences of the United States of America (1 July 2008)
    by Jory Z Z Ruscio, Deept Kumar, Maulik Shukla, Michael G G Prisant, T M M Murali, Alexey V V Onufriev
    posted to myoglobin molecular-dynamics ligand-binding by kjell on 2008-08-14 14:24:28 as ** along with 1 person testmb
  • Watching a Protein as it Functions with 150-ps Time-Resolved X-ray Crystallography
    Science, Vol. 300, No. 5627. (20 June 2003), pp. 1944-1947.
    by Friedrich Schotte, Manho Lim, Timothy A Jackson, Aleksandr V Smirnov, Jayashree Soman, John S Olson, George N Phillips, Michael Wulff, Philip A Anfinrud
    posted to x-ray myoglobin co-bound by kjell on 2008-08-12 20:39:37 as ** along with 2 people pspicer ruvido
  • Zinc porphyrin: A fluorescent acceptor in studies of Zn-cytochrome c unfolding by fluorescence resonance energy transfer
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 31. (5 August 2008), pp. 10779-10784.
    by Amy A Ensign, Iris Jo, Ilyas Yildirim, Todd D Krauss, Kara L Bren
    posted to weekly-readings heme fret folding cytochrome-c by kjell on 2008-08-06 14:34:46 as **
  • Atomic level computational identification of ligand migration pathways between solvent and binding site in myoglobin
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 27. (8 July 2008), pp. 9204-9209.
    by Jory Z Ruscio, Deept Kumar, Maulik Shukla, Michael G Prisant, TM Murali, Alexey V Onufriev
    posted to weekly-readings myoglobin molecular-dynamics co-bound by kjell on 2008-08-01 14:34:40 as **
  • Nonadditive Interactions in Protein Folding: The Zipper Model of Cytochrome
    Journal of Biological Physics, Vol. 33, No. 4. (2007), pp. 255-270.
    by A Morozov, Y Shiu, C Liang, M Tsai, S Lin
    posted to weekly-readings folding cytochrome-c by kjell on 2008-07-25 18:32:43 as **
  • notes pH-induced equilibrium unfolding of apomyoglobin: Substitutions at conserved Trp14 and Met131 and non-conserved Val17 positions
    Biochemistry (Moscow), Vol. 73, No. 6. (1 June 2008), pp. 693-701.
    by A Dyuysekina, D Dolgikh, E Samatova, E Tiktopulo, V Balobanov, V Bychkova
    posted to weekly-readings myoglobin molar-extinction-coefficient folding by kjell on 2008-07-25 18:26:09 as **
  • Physiology: Myoglobin's new clothes
    Nature, Vol. 454, No. 7203. (23 July 2008), pp. 416-417.
    by Andrew Cossins, Michael Berenbrink
    posted to weekly-readings myoglobin by kjell on 2008-07-24 22:30:11 as **
  • Structurally engineered cytochromes with unusual ligand-binding properties: expression of Saccharomyces cerevisiae Met-80-->Ala iso-1-cytochrome c
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 90, No. 24. (1993), pp. 11456-11459.
    by Y Lu, DR Casimiro, KL Bren, JH Richards, HB Gray
    posted to cytochrome-c by kjell on 2008-07-22 21:13:41 as **
  • Resonance enhancement in the ultraviolet Raman spectra of aromatic amino acids
    Journal of Physical Chemistry, Vol. 89, No. 10. (1985), pp. 1856-1861.
    by Richard P Rava, Thomas G Spiro
    posted to cytochrome-c-ref by kjell on 2008-07-22 16:51:10 as **
  • The Heme Chromophore in the Ultraviolet
    J. Biol. Chem., Vol. 242, No. 19. (10 October 1967), pp. 4441-4448.
    by Dan W Urry
    posted to cytochrome-c-ref by kjell on 2008-07-22 16:47:38 as **
  • Nonexponential protein relaxation: dynamics of conformational change in myoglobin
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 90, No. 12. (1993), pp. 5801-5804.
    by M Lim, TA Jackson, PA Anfinrud
    posted to cytochrome-c-ref by kjell on 2008-07-22 16:40:41 as **
  • Heme Distortion Modulated by Ligand-Protein Interactions in Inducible Nitric-oxide Synthase
    J. Biol. Chem., Vol. 279, No. 25. (18 June 2004), pp. 26489-26499.
    by David Li, Dennis J Stuehr, Syun-Ru Yeh, Denis L Rousseau
    posted to cytochrome-c-ref by kjell on 2008-07-22 16:33:27 as **
  • Characterization of Horse Cytochrome c Expressed in Escherichia coli
    Protein Expression and Purification, Vol. 22, No. 2. (July 2001), pp. 220-224.
    by Chetan N Patel, Maria C Lind, Gary J Pielak
    posted to purification cytochrome-c-ref cytochrome-c by kjell on 2008-07-22 16:30:25 as **
  • Electric Fields at the Active Site of an Enzyme: Direct Comparison of Experiment with Theory
    Science, Vol. 313, No. 5784. (14 July 2006), pp. 200-204.
    by Ian T Suydam, Christopher D Snow, Vijay S Pande, Steven G Boxer
    posted to cytochrome-c-ref by kjell on 2008-07-22 16:23:50 as ** along with 1 person jbchang
  • Protein relaxation dynamics in human myoglobin
    Chemical Physics, Vol. 158 (1991), pp. 249-260.
    by DG Lambright, S Balasubramanian, SG Boxer
    posted to cytochrome-c-ref by kjell on 2008-07-22 15:44:59 as **
  • Recombinant Equine Cytochrome c in Escherichia coli: High-Level Expression, Characterization, and Folding and Assembly Mutants
    Biochemistry, Vol. 41, No. 47. (26 November 2002), pp. 13894-13901.
    by JN Rumbley, L Hoang, SW Englander
    posted to purification cytochrome-c-ref cytochrome-c by kjell on 2008-07-21 16:08:00 as read
  • Towards resolution of ambiguity for the unfolded state
    Biophys. J. (9 May 2008), biophysj.107.121855.
    by Gregory Beaucage
    posted to weekly-readings folding cytochrome-c by kjell on 2008-07-18 14:48:45 as ** along with 1 person paulschlesinger
  • Direct observation of fast protein conformational switching
    Proceeding of the National Academy of Sciences of the United States of America, Vol. 105, No. 25. (24 June 2008), pp. 8619-8624.
    by Haruto Ishikawa, Kyungwon Kwak, Jean K Chung, Seongheun Kim, Michael D Fayer
    posted to weekly-readings myoglobin cytochrome-c-ref co-bound by kjell on 2008-07-18 14:37:08 as **
  • Ultrafast Dynamics and Anionic Active States of the Flavin Cofactor in Cryptochrome and Photolyase
    J. Am. Chem. Soc., Vol. 130, No. 24. (18 June 2008), pp. 7695-7701.
    by Ya-Ting Kao, Chuang Tan, Sang-Hun Song, Nuri Öztürk, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong
    posted to dpz-article by kjell on 2008-07-01 14:44:21 as **
  • Ultrafast Hydration Dynamics in the Lipidic Cubic Phase: Discrete Water Structures in Nanochannels
    J. Phys. Chem. B, Vol. 110, No. 43. (2 November 2006), pp. 21994-22000.
    by J Kim, W Lu, W Qiu, L Wang, M Caffrey, D Zhong
    posted to dpz-article by kjell on 2008-07-01 14:25:14 as **
  • notes The Heme Oxygenase(s)-Phytochrome System of Pseudomonas aeruginosa
    J. Biol. Chem., Vol. 279, No. 44. (29 October 2004), pp. 45791-45802.
    by Rosalina Wegele, Ronja Tasler, Yuhong Zeng, Mario Rivera, Nicole Frankenberg-Dinkel
    posted to heme by kjell on 2008-06-16 15:09:40 as **
  • Dynamics of Ligand Rebinding to Unfolded MbCO by Guanidine HCl
    Biophys. J., Vol. 94, No. 11. (1 June 2008), pp. L84-86.
    by Jaeheung Park, Jooyoung Kim, Taegon Lee, Manho Lim
    posted to myoglobin ligand-binding folding co-bound by kjell on 2008-06-07 15:28:29 as **
  • Ultrafast Heme-Residue Bond Formation in Six-Coordinate Heme Proteins: Implications for Functional Ligand Exchange
    Biochemistry, Vol. 47, No. 21. (27 May 2008), pp. 5718-5723.
    by Marten H Vos, Andrea Battistoni, Christophe Lechauve, Michael C Marden, Laurent Kiger, Alain Desbois, Eric Pilet, Eve Rosny, Ursula Liebl
    posted to myoglobin heme cytochrome-c by kjell on 2008-06-07 15:09:29 as **
  • Structural Dynamics of Myoglobin
    Methods in Enzymology, Vol. 437 (2008), pp. 397-416.
    by M Brunori, D Bourgeois, B Vallone
    edited by Robert K Poole
    posted to myoglobin molecular-dynamics by kjell on 2008-05-28 15:21:36 as **
  • Structural Changes of Horse Heart Ferricytochrome c Induced by Changes of Ionic Strength and Anion Binding
    Biochemistry, Vol. 47, No. 18. (6 May 2008), pp. 5250-5257.
    by Ronak Shah, Reinhard Schweitzer-Stenner
    posted to cytochrome-c by kjell on 2008-05-28 15:15:13 as **
  • Time-Resolved X-Ray Crystallography of Heme Proteins
    Methods in Enzymology, Vol. 437 (2008), pp. 379-395.
    by Vukica Šrajer, William E Royer
    posted to x-ray heme by kjell on 2008-05-28 14:59:45 as **
  • Spectroscopic, Structural, and Functional Characterization of the Alternative Low-Spin State of Horse Heart Cytochrome c
    Biophys. J., Vol. 94, No. 10. (15 May 2008), pp. 4066-4077.
    by Katia C Mugnol, Romulo A Ando, Rafael Y Nagayasu, Adelaide Faljoni-Alario, Sergio Brochsztain, Paulo S Santos, Otaciro R Nascimento, Iseli L Nantes
    posted to cytochrome-c by kjell on 2008-05-20 16:18:23 as **
  • How to measure and predict the molar absorption coefficient of a protein
    Protein Sci, Vol. 4, No. 11. (1 November 1995), pp. 2411-2423.
    by CN Pace, F Vajdos, L Fee, G Grimsley, T Gray
    posted to molar-extinction-coefficient quantum-yield by kjell on 2008-03-29 17:48:02 as ** along with 1 person min013
  • Transient and Stationary Spectroscopy of Cytochrome c: Ultrafast Internal Conversion Controls Photoreduction
    Photochemistry and Photobiology, Vol. 84, No. 1. (2008), pp. 193-201.
    by Dennis Lowenich, Karl Kleinermanns, Venugopal Karunakaran, Sergey A Kovalenko
    posted to transient-absorption cytochrome-c-ref cytochrome-c by kjell on 2008-02-15 19:04:51 as **
  • Heme Protein Assemblies
    Chemical Reviews, Vol. 104, No. 2. (2004), pp. 617-650.
    by Charles J Reedy, Brian R Gibney
    posted to enjoyable-reviews heme by kjell on 2008-02-14 15:55:29 as **
  • Dynamic personalities of proteins
    Nature, Vol. 450, No. 7172. (12 December 2007), pp. 964-972.
    by Katherine Henzler-Wildman, Dorothee Kern
    posted to enjoyable-reviews by kjell on 2008-02-04 22:37:44 as ** along with 11 people and 1 group GeeSharpMinor higueruelo chad_davis allmensch choonpeng rsantana cjeans sobolevnrm wilbur mijam phoenixzxl baker-group
  • Physics of proteins
    Annu Rev Biophys Biomol Struct, Vol. 36 (2007), pp. 261-280.
    by JR Banavar, A Maritan
    posted to enjoyable-reviews by kjell on 2008-02-04 22:36:00 as **
  • Unusually Strong H-Bonding to the Heme Ligand and Fast Geminate Recombination Dynamics of the Carbon Monoxide Complex of Bacillus subtilis Truncated Hemoglobin
    Biochemistry, Vol. 47, No. 3. (22 January 2008), pp. 902-910.
    by A Feis, A Lapini, B Catacchio, S Brogioni, P Foggi, E Chiancone, A Boffi, G Smulevich
    posted to transient-absorption tr-hb weekly-readings by kjell on 2008-02-04 15:21:53 as **
  • Structural Dynamics of Myoglobin: FTIR-TDS Study of NO Migration and Binding†
    Biochemistry, Vol. 47, No. 3. (22 January 2008), pp. 935-948.
    by K Nienhaus, P Palladino, GU Nienhaus
    posted to ligand-binding myoglobin weekly-readings by kjell on 2008-02-04 15:20:09 as **
  • Effect of Reversed Heme Orientation on Circular Dichroism and Cooperative Oxygen Binding of Human Adult Hemoglobin
    Biochemistry, Vol. 47, No. 2. (15 January 2008), pp. 517-525.
    by M Nagai, Y Nagai, Y Aki, K Imai, Y Wada, S Nagatomo, Y Yamamoto
    posted to circular-dichroism hemeoglobin weekly-readings by kjell on 2008-02-04 15:16:27 as **
  • Relaxation dynamics of myoglobin in solution
    Physical Review Letters, Vol. 68, No. 3. (20 January 1992), 408.
    by WD Tian, JT Sage, V Šrajer, PM Champion
    posted to co-bound fall-04 geminate-recombination myoglobin by kjell on 2008-01-28 15:45:24 as **
  • notes Time-resolved spectroscopy of hemoglobin and its complexes with subpicosecond optical pulses
    Science, Vol. 193, No. 4247. (2 July 1976), pp. 50-51.
    by Cv Shank, Ep Ippen, R Bersohn
    posted to hemeoglobin by kjell on 2008-01-26 20:40:59 as **
  • Time scales and pathways for kinetic energy relaxation in solvated proteins: Application to carbonmonoxy myoglobin
    The Journal of Chemical Physics, Vol. 113, No. 17. (2000), pp. 7702-7711.
    by Diane E Sagnella, John E Straub, D Thirumalai
    posted to co-bound molecular-dynamics myoglobin by kjell on 2008-01-25 15:33:25 as **
  • Directed Energy "Funneling" Mechanism for Heme Cooling Following Ligand Photolysis or Direct Excitation in Solvated Carbonmonoxy Myoglobin
    J. Phys. Chem. B, Vol. 105, No. 29. (26 July 2001), pp. 7057-7063.
    by DE Sagnella, JE Straub
    posted to molecular-dynamics myoglobin by kjell on 2008-01-25 15:29:00 as **
  • Vibrational Energy Relaxation of "Tailored" Hemes in Myoglobin Following Ligand Photolysis Supports Energy Funneling Mechanism of Heme "Cooling"
    J. Phys. Chem. B, Vol. 107, No. 38. (25 September 2003), pp. 10634-10639.
    by L Bu, JE Straub
    posted to molecular-dynamics myoglobin by kjell on 2008-01-25 15:26:56 as **
  • Simulating Vibrational Energy Flow in Proteins: Relaxation Rate and Mechanism for Heme Cooling in Cytochrome c
    J. Phys. Chem. B, Vol. 107, No. 44. (6 November 2003), pp. 12339-12345.
    by L Bu, JE Straub
    posted to molecular-dynamics cytochrome-c-ref cytochrome-c by kjell on 2008-01-25 15:25:50 as **
  • Observation of sub-100 ps conformational changes in photolyzed carbonmonoxy-myoglobin probed by time-resolved circular dichroism
    Chemical Physics Letters, Vol. 415, No. 4-6. (11 November 2005), pp. 313-316.
    by Thibault Dartigalongue, Francois Hache
    posted to circular-dichroism myoglobin by kjell on 2008-01-25 14:52:23 as **
  • Bond or Cage Effect: How Nitrophorins Transport and Release Nitric Oxide
    J. Am. Chem. Soc. (12 January 2008)
    by MA Marti, MCG Lebrero, AE Roitberg, DA Estrin
    posted to nitrophorin by kjell on 2008-01-25 14:51:42 as **
  • Spectral Broadening in Biomolecules
    Physical Review Letters, Vol. 57, No. 10. (1986), 1267.
    by V Šrajer, KT Schomacker, PM Champion
    posted to myoglobin by kjell on 2008-01-25 14:26:18 as ** along with 1 person loison
  • Excited-State Axial-Ligand Photodissociation and Nonpolar Protein-Matrix Reorganization in Zn(II)-Substituted Cytochrome <i>c</i>
    J. Phys. Chem. B, Vol. 108, No. 33. (19 August 2004), pp. 12602-12607.
    by S Lampa-Pastirk, RC Lafuente, WF Beck
    posted to cytochrome-c-ref by kjell on 2008-01-22 20:41:37 as **
  • Protein Dynamics and Cytochrome c: Correlations between Ligand Vibrations and Redox Activity
    Journal of the American Chemical Society, Vol. 124, No. 9. (2002), pp. 1846-1847.
    by JK Chin, R Jimenez, FE Romesberg
    posted to bibtex-import cytochrome-c-ref by kjell on 2008-01-22 20:39:17 as **
  • Binding of CO to myoglobin from a heme pocket docking site to form nearly linear Fe-C-O
    Science, Vol. 269, No. 5226. (18 August 1995), pp. 962-966.
    by M Lim, TA Jackson, PA Anfinrud
    posted to cytochrome-c-ref by kjell on 2008-01-22 20:35:41 as **
  • FAST PROTEIN DYNAMICS PROBED WITH INFRARED VIBRATIONAL ECHO EXPERIMENTS
    Annual Review of Physical Chemistry, Vol. 52, pp. 315-356.
    by Michael D Fayer
    posted to cytochrome-c-ref by kjell on 2008-01-22 20:20:40 as **
  • Temperature Derivative Fluorescence Spectroscopy as a Tool to Study Dynamical Changes in Protein Crystals
    Biophys. J., Vol. 86, No. 5. (1 May 2004), pp. 3176-3185.
    by Martin Weik, Xavier Vernede, Antoine Royant, Dominique Bourgeois
    posted to cytochrome-c-ref by kjell on 2008-01-22 20:09:56 as **
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