kluck's library 59 articles Export

	A structural approach for finding functional modules from large biological networks. [My Copy] BMC bioinformatics, Vol. 9 Suppl 9, No. Suppl 9. (2008), S19. by M. Mete, F. Tang, X. Xu, N. Yuruk posted to annotation function hubs modul network ppi prediction by kluck on 2008-09-25 08:33:51 as along with 2 people carlk cgaugain
	Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis [My Copy] Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 2002-2009. by Majid Masso, Iosif I. Vaisman posted to mutants prediction stability structure by kluck on 2008-09-25 08:30:57 as along with 4 people medic0747 phoenixzxl zwang afon
	The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008), 80. by Michael Hsing, Kendall Byler, Artem Cherkasov posted to gene hubs interaction network ontology prediction protein by kluck on 2008-09-19 08:21:11 as along with 5 people guhjy jfr natstreet dolchan renatomilani
	Identification of protein interaction partners and protein-protein interaction sites [My Copy] Journal of Molecular Biology, Vol. In Press, Accepted Manuscript by Sophie Sacquin-Mora, Alessandra Carbone, Richard Lavery posted to docking ppi prediction by kluck on 2008-08-20 10:46:04 as along with 2 people guhjy jteyra
	An integrative approach for predicting interactions of protein regions [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i35-41. by Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht posted to domain linear motifs ppi prediction by kluck on 2008-08-11 10:32:17 as along with 4 people phoenixzxl Jporci neils zwang
	Impacts of protein-protein interaction domains on organism and network complexityPPI domains and organism/network complexity. [My Copy] Genome research (7 August 2008) by Kai Xia, Zheng Fu, Lei Hou, Jing-Dong J D. Han posted to domain htp network ppi protein by kluck on 2008-08-11 10:30:57 as along with 2 people grahamc bpcusack
	Probing the Extent of Randomness in Protein Interaction Networks [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000114. by Joseph Ivanic, Anders Wallqvist, Jaques Reifman posted to network ppi randomness by kluck on 2008-07-28 08:16:45 as along with 2 people jfr Ema
	Ontologizer 2.0 - A Multifunctional Tool for GO Term Enrichment Analysis and Data Exploration. [My Copy] Bioinformatics (Oxford, England) (29 May 2008) by Sebastian Bauer, Steffen Grossmann, Martin Vingron, Peter N N. Robinson posted to enrichment go by kluck on 2008-07-28 08:14:55 as along with 5 people cmzmasek diamantis dullhunk barriot guhjy
	The spindle checkpoint functions of Mad3 and Mad2 depend on a Mad3 KEN box-mediated interaction with Cdc20-APC/C. [My Copy] The Journal of biological chemistry (13 June 2008) by Matylda Sczaniecka, Anna Feoktistova, Karen M M. May, et al.Jun-Song S. Chen, Julie Blyth, Kathleen L L. Gould, Kevin G G. Hardwick posted to apcc kenbox by kluck on 2008-06-19 08:36:55 as along with 1 person janasont
	Biological function in a non-native partially folded state of a protein [My Copy] The EMBO Journal, Vol. aop, No. current. (01 May 2008) by Francesco Bemporad, Joerg Gsponer, Harri I. Hopearuoho, et al.Georgia Plakoutsi, Gianmarco Stati, Massimo Stefani, Niccolo Taddei, Michele Vendruscolo, Fabrizio Chiti posted to disorder function iup protein by kluck on 2008-06-18 11:27:27 as
	Pseudosubstrate Inhibition of APCCdh1 by Acm1: Regulation by Proteolysis and Cdc28 Phosphorylation. [My Copy] Molecular and cellular biology (2 June 2008) by Denis Ostapenko, Janet L L. Burton, Ruiwen Wang, Mark J J. Solomon posted to apc cell cycle dbox kenbox ubiquitin by kluck on 2008-06-11 08:53:15 as
	Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex. [My Copy] Cell, Vol. 133, No. 4. (16 May 2008), pp. 653-665. by L. Jin, A. Williamson, S. Banerjee, I. Philipp, M. Rape posted to apcc ubiquitin by kluck on 2008-06-04 14:04:02 as
	DeTEKting ubiquitination of APC/C substrates. [My Copy] Cell, Vol. 133, No. 4. (16 May 2008), pp. 570-572. by A. L. Haas, K. D. Wilkinson posted to apcc cell cycle linear motifs by kluck on 2008-06-04 14:03:20 as
	Quantification of the Elevated Rate of Domain Rearrangements in Metazoa [My Copy] Journal of Molecular Biology, Vol. 372, No. 5. (05 October 2007), pp. 1337-1348. by Diana Ekman, Åsa K. Björklund, Arne Elofsson posted to arrangement domain evolution by kluck on 2008-05-22 08:45:26 as along with 3 people jameswasmuth cjeans gulkur
	Domain deletions and substitutions in the modular protein evolution [My Copy] FEBS Journal, Vol. 273, No. 9. (May 2006), pp. 2037-2047. by January W. 3rd, Francois Beaussart, Erich Bornberg-Bauer posted to domain evolution by kluck on 2008-05-22 08:36:45 as along with 4 people clearbluespring wiedenhoeft jameswasmuth choonpeng
	Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN) [My Copy] Bioinformatics, Vol. 23, No. 14. (15 July 2007), pp. 1834-1836. by Francois Beaussart, January Weiner, Erich Bornberg-Bauer posted to aidan annotation arrangement domain by kluck on 2008-05-22 08:30:18 as along with 3 people tny january gulkur
	Predicting protein function from sequence and structure. [My Copy] Nature reviews. Molecular cell biology, Vol. 8, No. 12. (December 2007), pp. 995-1005. by D. Lee, O. Redfern, C. Orengo posted to function prediction sequence structure by kluck on 2008-05-22 08:14:45 as along with 12 people and 1 group michaelbarton smpraveena MarcoAlvarez skhadar neils cjeans zwang Evangelia hpaces Ema renatomilani janasont MuraLab
	CATHEDRAL: A Fast and Effective Algorithm to Predict Folds and Domain Boundaries from Multidomain Protein Structures [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e232. by Oliver C. Redfern, Andrew Harrison, Tim Dallman, Frances M. Pearl, Christine A. Orengo posted to cathedral domain prediction structure by kluck on 2008-05-22 08:05:53 as along with 3 people xingwuliu Ema dgront
	Whole genome protein domain analysis using a new method for domain clustering [My Copy] Computers & Chemistry, Vol. 23, No. 3-4. (15 June 1999), pp. 333-340. by Jérome Gouzy, Florence Corpet, Daniel Kahn posted to domain evolution mkdom by kluck on 2008-05-22 07:55:09 as
	Comparative analysis of five protein-protein interaction corpora [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 3. (2008), S6. by Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Bjorne, Filip Ginter, Tapio Salakoski posted to htp ppi prediction scoring text-mining by kluck on 2008-05-13 10:50:04 as along with 10 people and 3 groups martingerner satre pault farzanehs guhjy laughcry vlachmore aprildh31 anthropomorphism gilesc NaCTeM BioInfPDL Proteasome
	Assessment of the probabilities for evolutionary structural changes in protein folds. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 7. (1 April 2007), pp. 832-841. by Juris Viksna, David Gilbert posted to evolution mejc modul protein by kluck on 2008-05-13 10:43:01 as along with 1 person martainn
	Structural disorder serves as a weak signal for intracellular protein degradation. [My Copy] Proteins, Vol. 71, No. 2. (1 May 2008), pp. 903-909. by P. Tompa, J. Prilusky, I. Silman, J. L. Sussman posted to dbox degradation disorder htp iup kenbox motifs ppi protein by kluck on 2008-05-05 15:09:47 as along with 3 people camster higueruelo allmensch
	Large-scale screening for novel low-affinity extracellular protein interactions [My Copy] Genome Res. (22 February 2008), gr.7187808. by Mark K. Bushell, Christian Sollner, Benjamin Schuster-Boeckler, Alex Bateman, Gavin J. Wright posted to extracellular htp ppi protein proteomics by kluck on 2008-04-29 09:34:52 as along with 9 people tmmurali neils Dualsystems grahamc zwang guhjy carlk niallhaslam paolomarcatili
	From pull-down data to protein interaction networks and com-plexes with biological relevance. [My Copy] Bioinformatics (26 February 2008) by Bing Zhang, Byung-Hoon H. Park, Tatiana Karpinets, Nagiza F F. Samatova posted to complex core htp mass network ppi prediction protein spectrometry by kluck on 2008-04-25 08:25:13 as along with 4 people guhjy chad_davis grahamc carlk
	A careful disorderliness in the proteome: sites for interaction and targets for future therapies. [My Copy] FEBS letters, Vol. 582, No. 8. (9 April 2008), pp. 1271-1275. by R. B. Russell, T. J. Gibson posted to iup linear motifs ppi protein review by kluck on 2008-04-23 08:32:32 as along with 7 people niallhaslam cat_hutchinson68 guhjy Evangelia robrussell higueruelo chad_davis
	The MoVIN server for the analysis of protein interaction networks. [My Copy] BMC bioinformatics, Vol. 9 Suppl 2 (2008) by P. Marcatili, G. Bussotti, A. Tramontano posted to htp motifs network ppi prediction protein proteomics by kluck on 2008-04-21 07:34:49 as along with 3 people maralena carlk guhjy
	Intrinsic disorder in the Protein Data Bank. [My Copy] Journal of biomolecular structure & dynamics, Vol. 24, No. 4. (February 2007), pp. 325-342. by T. Le Gall, P. R. Romero, M. S. Cortese, V. N. Uversky, A. K. Dunker posted to disorder iup pdb protein by kluck on 2008-04-17 08:55:45 as along with 2 people chgjb carlosjavierna
	The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. [My Copy] J Mol Biol, Vol. 347, No. 4. (8 April 2005), pp. 827-839. by Z. Dosztányi, V. Csizmók, P. Tompa, I. Simon posted to disorder iup iupred prediction protein by kluck on 2008-04-17 08:46:03 as
	IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3433-3434. by Z. Dosztányi, V. Csizmok, P. Tompa, I. Simon posted to disorder iup iupred prediction protein by kluck on 2008-04-17 08:44:38 as along with 1 person chad_davis
	Characterization and prediction of protein interfaces to infer protein-protein interaction networks. [My Copy] Current pharmaceutical biotechnology, Vol. 9, No. 2. (April 2008), pp. 67-76. by O. Keskin, N. Tuncbag, A. Gursoy posted to network ppi prediction protein by kluck on 2008-04-10 16:46:11 as along with 1 person flbarroso
	Chaperones as integrators of cellular networks: changes of cellular integrity in stress and diseases. [My Copy] IUBMB life, Vol. 60, No. 1. (January 2008), pp. 10-18. by R. Palotai, M. S. Szalay, P. Csermely posted to complex network ppi protein proteomics response stress by kluck on 2008-04-03 12:20:01 as
	Walking the interactome for prioritization of candidate disease genes. [My Copy] American journal of human genetics, Vol. 82, No. 4. (April 2008), pp. 949-958. by Sebastian Köhler, Sebastian Bauer, Denise Horn, Peter N. Robinson posted to disease genes htp network ppi protein proteomics by kluck on 2008-03-31 07:11:54 as along with 6 people daforerog saket jfr daed guhjy raiyar
	Gene3D: comprehensive structural and functional annotation of genomes. [My Copy] Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008) by C. Yeats, J. Lees, A. Reid, et al.P. Kellam, N. Martin, X. Liu, C. Orengo posted to annotation go network ppi protein by kluck on 2008-03-18 14:29:45 as along with 2 people and 1 group grottenolm guhjy References for 3DSim paper
	Structural deformation upon protein-protein interaction: a structural alphabet approach [My Copy] BMC Structural Biology, Vol. 8 (28 February 2008), 12. by Juliette Martin, Leslie Regad, Helene Lecornet, Anne-Claude Camproux posted to complex induced-fit ppi protein by kluck on 2008-03-03 10:39:16 as
	Oxygen content of transmembrane proteins over macroevolutionary time scales [My Copy] Nature (20 December 2006) by Claudia Acquisti, Jürgen Kleffe, Sinéad Collins posted to mejc protein by kluck on 2008-03-03 09:03:00 as along with 1 person grahamc
	PRINCESS, a Protein Interaction Confidence Evaluation System with Multiple Data Sources [My Copy] Mol Cell Proteomics, Vol. 7, No. 6. (1 June 2008), pp. 1043-1052. by Dong Li, Wanlin Liu, Zhongyang Liu, et al.Jian Wang, Qijun Liu, Yunping Zhu, Fuchu He posted to htp network ppi protein scoring by kluck on 2008-02-22 11:14:24 as along with 4 people carlk anf guhjy phoenixzxl
	Evidence of probabilistic behaviour in protein interaction networks. [My Copy] BMC Syst Biol, Vol. 2, No. 1. (31 January 2008) by Joseph Ivanic, Anders Wallqvist, Jaques Reifman posted to network ppi probability protein by kluck on 2008-02-22 11:11:23 as along with 2 people burak wilbur
	Assessing the Exceptionality of Network Motifs. [My Copy] J Comput Biol (7 February 2008) by F Picard, J-J J. Daudin, M Koskas, S Schbath, S Robin posted to htp linear motifs network ppi protein by kluck on 2008-02-22 11:06:32 as along with 2 people tmmurali maralena
	Integration of genomic data for inferring protein complexes from global protein-protein interaction networks. [My Copy] IEEE Trans Syst Man Cybern B Cybern, Vol. 38, No. 1. (February 2008), pp. 5-16. by H. Zheng, H. Wang, D. H. Glass posted to complex htp network ppi protein by kluck on 2008-02-22 11:01:48 as
	Genome-wide inference of protein interaction sites: lessons from the yeast high-quality negative protein-protein interaction dataset. [My Copy] Nucleic Acids Res (14 February 2008) by Jie Guo, Xiaomei Wu, Da-Yong Y. Zhang, Kui Lin posted to htp linear motifs network ppi protein scoring by kluck on 2008-02-22 10:59:52 as along with 4 people tmmurali neils stef_lise paolomarcatili
	The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006), 97. by Richard Cote, Philip Jones, Rolf Apweiler, Henning Hermjakob posted to go ontology webservice by kluck on 2008-02-13 13:31:56 as along with 3 people robert ientb dullhunk
	The Gene Ontology Annotation (GOA) Database--an integrated resource of GO annotations to the UniProt Knowledgebase. [My Copy] In Silico Biol, Vol. 4, No. 1. (2004), pp. 5-6. by E. Camon, D. Barrell, V. Lee, E. Dimmer, R. Apweiler posted to annotation go ontology by kluck on 2008-02-12 13:06:53 as
	Co-evolution of transcriptional and post-translational cell-cycle regulation [My Copy] Nature (27 September 2006) by Lars J. Jensen, Thomas S. Jensen, Ulrik de Lichtenberg, Søren Brunak, Peer Bork posted to evolution linear mejc motifs by kluck on 2008-02-05 15:42:58 as along with 7 people and 1 group JAShapiro adepace koller olympos ccr cjeans larsjuhljensen EisenLab
	SIRW: A web server for the Simple Indexing and Retrieval System that combines sequence motif searches with keyword searches. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3771-3774. by C. Ramu posted to motifs sirw by kluck on 2008-02-05 15:40:25 as
	The Gene Ontology (GO) project in 2006. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by posted to go by kluck on 2008-02-05 15:36:20 as along with 3 people mgomes shikin dullhunk
	Destruction box-dependent degradation of aurora B is mediated by the anaphase-promoting complex/cyclosome and Cdh1. [My Copy] Cancer Res, Vol. 65, No. 19. (1 October 2005), pp. 8730-8735. by S. Stewart, G. Fang posted to aurorab dbox kinase by kluck on 2008-02-05 15:17:36 as
	The anaphase promoting complex/cyclosome: a machine designed to destroy [My Copy] Nature Reviews Molecular Cell Biology, Vol. 7, No. 9. (09 August 2006), pp. 644-656. by Jan-Michael Peters posted to apc complex dbox by kluck on 2008-02-05 15:12:20 as along with 1 person catcremona
	The anaphase-promoting complex: a key factor in the regulation of cell cycle. [My Copy] Oncogene, Vol. 24, No. 3. (13 January 2005), pp. 314-325. by A. Castro, C. Bernis, S. Vigneron, J. C. Labbé, T. Lorca posted to apc complex dbox by kluck on 2008-02-05 15:09:32 as
	Gene Ontology annotation quality analysis in model eukaryotes. [My Copy] Nucleic Acids Res (10 January 2008) by Teresia J J. Buza, Fiona M M. McCarthy, Nan Wang, Susan M M. Bridges, Shane C C. Burgess posted to go ontology by kluck on 2008-02-04 11:15:28 as along with 3 people yas guhjy carlk
	Population proteomics: Investigation of protein diversity in human populations. [My Copy] Proteomics (21 January 2008) by Dobrin Nedelkov posted to diversity mejc protein proteomics by kluck on 2008-01-31 09:35:14 as along with 1 person guhjy

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protein	27
ppi	22
network	16
prediction	13
htp	12
motifs	11
complex	8
domain	7
linear	7
go	6
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response	1
rna	1
sequence	1
sirw	1
spectrometry	1
stability	1
stress	1
text-mining	1
webservice	1

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