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	BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3439-3440. by S. Durinck, Y. Moreau, A. Kasprzyk, et al.S. Davis, B. De Moor, A. Brazma, W. Huber posted to r genomics genome genes datamining data_analysis_software biology bioinformatics analysis by kmdaily on 2009-11-18 23:46:11 as along with 5 people Vincent_Rouilly kshameer dullhunk fisherp incovoma
	The UCSC Genome Browser Database: update 2009 [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D755-761. by R. M. Kuhn, D. Karolchik, A. S. Zweig, et al.T. Wang, K. E. Smith, K. R. Rosenbloom, B. Rhead, B. J. Raney, A. Pohl, M. Pheasant, L. Meyer, F. Hsu, A. S. Hinrichs, R. A. Harte, B. Giardine, P. Fujita, M. Diekhans, T. Dreszer, H. Clawson, G. P. Barber, D. Haussler, W. J. Kent posted to motifmap human genomics genome genes datasets data computational chromosome biology bioinformatics by kmdaily on 2009-11-06 00:15:39 as along with 3 people taroleo cpwardell jfr
	Next generation software for functional trend analysis [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3043-3044. by Gabriel F. Berriz, John E. Beaver, Can Cenik, Murat Tasan, Frederick P. Roth posted to proteins networks genomics genome genes biology bioinformatics algorithms by kmdaily on 2009-11-05 23:55:45 as along with 4 people and 1 group jperkins tmmurali VGreiff guhjy Orengo Group Journal Picks
	Efficient computation of absent words in genomic sequences [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (26 March 2008), 167. by Julia Herold, Stefan Kurtz, Robert Giegerich posted to suffix_trees repeats regulatory motif metrics genomics genome computational bioinformatics algorithms by kmdaily on 2009-10-08 22:51:06 as along with 3 people operon xili03 langmead
	The diploid genome sequence of an Asian individual. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 60-65. by Jun Wang, Wei Wang, Ruiqiang Li, et al.Yingrui Li, Geng Tian, Laurie Goodman, Wei Fan, Junqing Zhang, Jun Li, Juanbin Zhang, Yiran Guo, Binxiao Feng, Heng Li, Yao Lu, Xiaodong Fang, Huiqing Liang, Zhenglin Du, Dong Li, Yiqing Zhao, Yujie Hu, Zhenzhen Yang, Hancheng Zheng, Ines Hellmann, Michael Inouye, John Pool, Xin Yi, Jing Zhao, Jinjie Duan, Yan Zhou, Junjie Qin, Lijia Ma, Guoqing Li, Zhentao Yang, Guojie Zhang, Bin Yang, Chang Yu, Fang Liang, Wenjie Li, Shaochuan Li, Dawei Li, Peixiang Ni, Jue Ruan, Qibin Li, Hongmei Zhu, Dongyuan Liu, Zhike Lu, Ning Li, Guangwu Guo, Jianguo Zhang, Jia Ye, Lin Fang, Qin Hao, Quan Chen, Yu Liang, Yeyang Su, A. San, Cuo Ping, Shuang Yang, Fang Chen, Li Li, Ke Zhou, Hongkun Zheng, Yuanyuan Ren, Ling Yang, Yang Gao, Guohua Yang, Zhuo Li, Xiaoli Feng, Karsten Kristiansen, Gane Ka-Shu K. Wong, Rasmus Nielsen, Richard Durbin, Lars Bolund, Xiuqing Zhang, Songgang Li, Huanming Yang, Jian Wang posted to bioinformatics biology genome genomics hts human sequencing by kmdaily on 2009-06-09 22:52:47 as along with 15 people rshe n00c fenghezi jonilaserson daforerog jessopher dakelley vmsr psique GustavoLacerda reyez guhjy caseybrown pkonings djkt
	Global mapping of protein-DNA interactions in vivo by digital genomic footprinting. [My Copy] Nature methods, Vol. 6, No. 4. (22 April 2009), pp. 283-289. by Jay R. Hesselberth, Xiaoyu Chen, Zhihong Zhang, et al.Peter J. Sabo, Richard Sandstrom, Alex P. Reynolds, Robert E. Thurman, Shane Neph, Michael S. Kuehn, William S. Noble, Stanley Fields, John A. Stamatoyannopoulos posted to bioinformatics biology genome genomics motif motifmap transcription by kmdaily on 2009-06-09 17:27:36 as along with 8 people absterga inesdesantiago humburg emptyhb roys coela fpattyn jbhiatt
	Mapping regions of yeast transcription factor IIIA required for DNA binding, interaction with transcription factor IIIC, and transcription activity [My Copy] J. Biol. Chem., Vol. 268, No. 15. (25 May 1993), pp. 11364-11371. by C. A. Milne, J. Segall posted to bioinformatics biology genomics regulatory retrovirus sandmeyer sandmeyerproject tfiiia transcription ty3 yeast by kmdaily on 2009-06-05 00:41:31 as
	Lentiviral vectors for cancer immunotherapy: transforming infectious particles into therapeutics [My Copy] Gene Therapy, Vol. aop, No. current. by K. Breckpot, J. L. Aerts, K. Thielemans, posted to bioinformatics biology cancer genome lentivirus retrovirus sandmeyerproject transposon ty3 virus by kmdaily on 2009-06-04 21:12:56 as
	An algorithm for finding novel gapped motifs in DNA sequences [My Copy] In RECOMB '98: Proceedings of the second annual international conference on Computational molecular biology (1998), pp. 228-233. by Emily Rocke, Martin Tompa posted to algorithms bioinformatics computational genomics motif motifdiscoveryproject projects regulatory by kmdaily on 2009-06-04 01:23:11 as
	Finding Subtle Motifs by Branching from Sample Strings [My Copy] (2003) by Alkes Price, Sriram Ramabhadran, Pavel A. Pevzner posted to algorithms bioinformatics computational genomics machinelearning motif motifdiscoveryproject projects search by kmdaily on 2009-06-04 01:14:18 as
	Extending Pattern Branching to Handle Challenging Instances [My Copy] BioInformatics and BioEngineering, 2006. BIBE 2006. Sixth IEEE Symposium on In BioInformatics and BioEngineering, 2006. BIBE 2006. Sixth IEEE Symposium on (2006), pp. 65-69. by J. Davila, S. Rajasekaran posted to algorithms bioinformatics computational genomics motif motifdiscoveryproject projects regulatory research by kmdaily on 2009-06-04 01:13:10 as
	Transcriptional Regulatory Networks in Saccharomyces cerevisiae [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804. by Tong I. Lee, Nicola J. Rinaldi, Francois Robert, et al.Duncan T. Odom, Ziv Bar-Joseph, Georg K. Gerber, Nancy M. Hannett, Christopher T. Harbison, Craig M. Thompson, Itamar Simon, Julia Zeitlinger, Ezra G. Jennings, Heather L. Murray, D. Benjamin Gordon, Bing Ren, John J. Wyrick, Jean-Bosco Tagne, Thomas L. Volkert, Ernest Fraenkel, David K. Gifford, Richard A. Young posted to baldi bioinformatics biology computational data genome genomics motifmap projects regulatory sandmeyer sandmeyerproject transcription yeast by kmdaily on 2009-05-27 23:57:18 as along with 32 people and 2 groups viren4388 mjoach kinop junehlee lillo80 camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 roys njcitulike brant kristallreiner Borelli Takayuki dquest siebert dbk-lab TNT
	Transposable Elements and Genome Organization: A Comprehensive Survey of Retrotransposons Revealed by the Complete Saccharomyces cerevisiae Genome Sequence [My Copy] Genome Res., Vol. 8, No. 5. (1 May 1998), pp. 464-478. by Jin M. Kim, Swathi Vanguri, Jef D. Boeke, Abram Gabriel, Daniel F. Voytas posted to baldi bioinformatics elements genome genomics sandmeyerproject transposable transposon ty3 yeast by kmdaily on 2009-05-27 01:43:34 as
	The Star RNA binding proteins Gld-1, Qki, Sam68 and SLM-2 bind bipartite RNA motifs [My Copy] BMC Molecular Biology, Vol. 10 (20 May 2009), 47. by Andre Galarneau, Stephane Richard posted to baldi bioinformatics biology genome genomics motif nematode projects regulatory worm cinquinproject by kmdaily on 2009-05-27 01:21:48 as
	Identification of genes expressed in the hermaphrodite germ line of C. elegans using SAGE [My Copy] BMC Genomics, Vol. 10 (09 May 2009), 213. by Xin, Dave Hansen posted to baldi bioinformatics biology genome genomics motif nematode projects regulatory transcription worm cinquinproject by kmdaily on 2009-05-27 01:18:38 as
	A Global Profile of Germline Gene Expression in C. elegans [My Copy] Molecular Cell, Vol. 6, No. 3. (September 2000), pp. 605-616. by V. Reinke posted to baldi bioinformatics biology motif motifmap nematode projects worm cinquinproject by kmdaily on 2009-05-26 19:11:37 as
	Crosstalk between the EGFR and LIN-12/Notch pathways in C. elegans vulval development. [My Copy] Science, Vol. 303 (2004), pp. 663-666. by A. S. Yoo, C. Bais, I. Greenwald posted to baldi bioinformatics genome motif motifmap nematode projects worm cinquinproject by kmdaily on 2009-05-26 19:09:14 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	lag-1, a gene required for lin-12 and glp-1 signaling in Caenorhabditis elegans, is homologous to human CBF1 and Drosophila Su(H). [My Copy] Development, Vol. 122 (1996), pp. 1373-1383. by S. Christensen, V. Kodoyianni, M. Bosenberg, L. C. Friedman, J. E. Kimble posted to baldi bioinformatics genome motifmap nematode projects worm cinquinproject by kmdaily on 2009-05-26 19:07:38 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Testing significance relative to a fold-change threshold is a TREAT. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 765-771. by Davis J. McCarthy, Gordon K. Smyth posted to analysis bayesian bioinformatics computational data genomics by kmdaily on 2009-03-30 23:20:12 as along with 12 people and 1 group shikin jfr VGreiff lwaldron rschulz rdiaz heliopais dswan bertelsen guhjy renatomilani paszkows Bioinformatics
	An integrated software system for analyzing ChIP-chip and ChIP-seq data. [My Copy] Nature biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300. by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong posted to bioinformatics genome genomics by kmdaily on 2009-02-20 08:50:32 as along with 24 people and 3 groups hzoltan fpattyn stubrown isimpson huali tonamswish ewilban1 sebastien_vigneau jfr cassj bryankr malcook rschulz mcm behindtherabbit psique renatomilani polivares guhjy inesdesantiago pengchy kengg bais idonaldson Neuroblastoma SIMR bioinformatics BenosLab
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted to algorithms bioinformatics genome genomics by kmdaily on 2009-02-20 01:14:05 as along with 18 people and 2 groups hzoltan n00c darian idonaldson michaelbarton inesdesantiago gdb ewilban1 tonamswish guhjy cassj fhalbrit jfr rschulz polivares cthachuk zhouyu aprasad JLab BergmanLab
	Optimized design and assessment of whole genome tiling arrays. [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007) by Stefan Gräf, Fiona G G G. Nielsen, Stefan Kurtz, et al.Martijn A A. Huynen, Ewan Birney, Henk Stunnenberg, Paul Flicek posted to algorithms array bioinformatics biology computational genome genomics probe repeats tiling by kmdaily on 2009-02-14 08:10:27 as along with 1 group Bioinformatics
	MicroRNAsGenomics, Biogenesis, Mechanism, and Function [My Copy] Cell, Vol. 116, No. 2. (23 January 2004), pp. 281-297. by D. Bartel posted to bioinformatics biology genome genomics mirna research by kmdaily on 2008-12-16 18:54:36 as along with 13 people shazo homonecloco vprieto druvus myzhang guhjy dayjm balabu skoch lp2 psique maralena tolot27
	Principles of MicroRNA–Target Recognition [My Copy] PLoS Biol, Vol. 3, No. 3. (15 February 2005), e85. by Julius Brennecke, Alexander Stark, Robert B. Russell, Stephen M. Cohen posted to bioinformatics biology genomics mirna networks regulatory research by kmdaily on 2008-12-16 18:33:52 as along with 13 people and 2 groups marywaye stharward sterovetta giovenko rklancer tardigrade andersbj mtagaya cdawson heliopais tauberj jfr ronnyherc microRNA GIG
	The impact of microRNAs on protein output. [My Copy] Nature, Vol. 455, No. 7209. (4 September 2008), pp. 64-71. by Daehyun Baek, Judit Villén, Chanseok Shin, Fernando D. Camargo, Steven P. Gygi, David P. Bartel posted to bioinformatics genome mirna regulatory transcription by kmdaily on 2008-11-11 22:33:37 as along with 25 people and 1 group framancuso danaiancu fishtank gderwin pengchy valeriehilgers guhjy martin-novak samgj heliopais askrajiv natsdorf jfr frohike giovenko mtagaya megraw djkt brianb emptyhb erel10 maralena ajaymalik caizhiqiang gdb microRNA
	Sequencing and comparison of yeast species to identify genes and regulatory elements [My Copy] Nature, Vol. 423, No. 6937. (15 May 2003), pp. 241-254. by Manolis Kellis, Nick Patterson, Matthew Endrizzi, Bruce Birren, Eric S. Lander posted to bioinformatics genomics motif regulatory transcription by kmdaily on 2008-08-26 21:46:15 as along with 5 people viren4388 Dulce kaarsinogen lyongu nklee
	TRANSFAC: transcriptional regulation, from patterns to profiles. [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 374-378. by V. Matys, E. Fricke, R. Geffers, et al.E. Gössling, M. Haubrock, R. Hehl, K. Hornischer, D. Karas, A. E. Kel, O. V. Kel-Margoulis, D. U. Kloos, S. Land, B. Lewicki-Potapov, H. Michael, R. Münch, I. Reuter, S. Rotert, H. Saxel, M. Scheer, S. Thiele, E. Wingender posted to transcription search research regulatory motifmap motif genomics genome data biology bioinformatics by kmdaily on 2008-08-12 16:35:17 as along with 8 people and 1 group raylim aprasad aalibes setar chad_davis GustavoLacerda marti Auger Dead 60's
	Natural similarity measures between position frequency matrices with an application to clustering [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 350-357. by Utz J. Pape, Sven Rahmann, Martin Vingron posted to algorithms bioinformatics biology computational genome genomics metrics regulatory transcription by kmdaily on 2008-08-12 02:17:19 as along with 5 people bsamal nklee maximilianh mclarenv csdhwang
	Whole-genome re-sequencing. [My Copy] Current opinion in genetics & development In Genomes and evolution, Vol. 16, No. 6. (December 2006), pp. 545-552. by David R. Bentley posted to bioinformatics biology genome genomics research by kmdaily on 2008-05-30 02:19:34 as along with 14 people and 3 groups pristanna rshe druvus n00c anuskap mmartin jameswasmuth usagi-kirin jmeppley frohike indigoviolet dchughes azazello jo_davies EisenLab G4ID Genetics-of-Gambling
	Advanced sequencing technologies and their wider impact in microbiology [My Copy] J Exp Biol, Vol. 210, No. 9. (1 May 2007), pp. 1518-1525. by Neil Hall posted to bioinformatics biology genome genomics research by kmdaily on 2008-05-30 02:19:04 as along with 5 people felsani Pascalichouchou xingxu rschulz bozdagd
	Next-generation sequencing transforms today's biology [My Copy] Nature Methods, Vol. 5, No. 1. (19 December 2007), pp. 16-18. by Stephan C. Schuster posted to bioinformatics genome genomics research by kmdaily on 2008-05-30 02:18:31 as along with 16 people rshe seb1 timflutre buyske skoch3 idoerg haelstaed floatingpoint giovenko neils umit guhjy yas balicea xingxu bozdagd
	Using quality scores and longer reads improves accuracy of Solexa read mapping [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (28 February 2008), 128. by Andrew Smith, Zhenyu Xuan, Michael Zhang posted to algorithms bioinformatics genome genomics research by kmdaily on 2008-05-30 02:15:32 as along with 18 people hzoltan seb1 heliopais bozdagd katholt inesdesantiago n00c maren floatingpoint lukaswindhager natstreet druvus jfr pengchy farhat ghattem mdimon caseybrown
	ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements [My Copy] Genome Res. (19 October 2006), gr.4537706. by James Taylor, Svitlana Tyekucheva, David C. King, Ross C. Hardison, Webb Miller, Francesca Chiaromonte posted to algorithms bioinformatics biology chromosome computational datamining genome genomics machinelearning motif regulatory search transcription by kmdaily on 2007-12-07 17:51:10 as along with 1 person timflutre
	The UCSC Known Genes [My Copy] Bioinformatics, Vol. 22, No. 9. (24 February 2006), pp. btl048-1046. by Fan Hsu, W. James Kent, Hiram Clawson, Robert M. Kuhn, Mark Diekhans, David Haussler posted to bioinformatics biology computational genome genomics research transcription by kmdaily on 2007-12-06 18:26:04 as along with 5 people manduca nedwards wenhan antonkratz rschulz
	Computational detection and location of transcription start sites in mammalian genomic DNA. [My Copy] Genome research, Vol. 12, No. 3. (1 March 2002), pp. 458-461. by T. A. Down, T. J. Hubbard posted to bioinformatics biology computational genome genomics motif regulatory research search transcription by kmdaily on 2007-12-04 07:02:47 as along with 4 people timhubbard tonamswish smiddha olympos
	Distinct class of putative ânon-conservedâ promoters in humans: Comparative studies of alternative promoters of human and mouse genes [My Copy] Genome Research, Vol. 17, No. 7. (1 July 2007), pp. 1005-1014. by Katsuki Tsuritani, Takuma Irie, Riu Yamashita, et al.Yuta Sakakibara, Hiroyuki Wakaguri, Akinori Kanai, Junko Mizushima-Sugano, Sumio Sugano, Kenta Nakai, Yutaka Suzuki posted to bioinformatics genome genomics motif regulatory by kmdaily on 2007-12-04 07:01:46 as along with 7 people and 2 groups maximilianh nickluscombe djkt cabbagezs toshiaki_katayama antonkratz cisevol EBI-regulation cis-regulatory-evolution
	Are There Rearrangement Hotspots in the Human Genome? [My Copy] PLoS Computational Biology, Vol. preprint, No. 2007. (1 September 2007), e209.eor. by Max Alekseyev, Pavel A. Pevzner posted to analysis bioinformatics chromosome evolution genome genomics rearrangement by kmdaily on 2007-09-15 17:30:47 as
	A Primer on Learning in Bayesian Networks for Computational Biology [My Copy] PLoS Comput Biol, Vol. 3, No. 8. (31 August 2007), e129. by Chris J. Needham, James R. Bradford, Andrew J. Bulpitt, David R. Westhead posted to analysis bayesian bioinformatics biology computational networks research by kmdaily on 2007-09-04 20:51:56 as along with 18 people and 1 group Jporci colm abhishek_tiwari kshameer tonamswish Borelli toerst aviad_work druvus giovenko jo_davies balicea macle GeeSharpMinor firoozye sobolevnrm bmaust schelhorn baker-group
	Automated Querying of Genome Databases [My Copy] PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e1. by Peter Schattner posted to analysis bioinformatics genome genomics by kmdaily on 2007-08-13 23:05:09 as along with 3 people skhadar mikaelhuss olympos
	Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches. [My Copy] Genome Res, Vol. 17, No. 6. (June 2007), pp. 807-817. by V. X. Jin, H. O'geen, S. Iyengar, R. Green, P. J. Farnham posted to bioinformatics computational genome genomics regulatory research by kmdaily on 2007-08-13 22:59:52 as along with 3 people and 1 group kengg cjeans ghattem Plantandetc

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genomics	45
genome	43
bioinformatics	40
biology	35
regulatory	23
transcription	21
computational	18
motif	17
baldi	15
research	15
sandmeyerproject	14
projects	13
sandmeyer	12
yeast	12
algorithms	11
ty3	10
motifmap	8
analysis	7
cinquinproject	6
search	6
transposon	5
data	5
worm	5
nematode	5
chromosome	4
mirna	4
motifdiscoveryproject	4
datamining	4
genes	3
networks	3
machinelearning	3
retrovirus	3
metrics	3
transposable	2
repeats	2
condensin	2
ranking	2
cheminformatics	2
bayesian	2
human	2
tfiiia	2
trna	2
hts	1
sequencing	1
regulatory_mechanisms	1
cancer	1
bedroc	1
molecules	1
evolution	1
suffix_trees	1
rearrangement	1
virus	1
proteins	1
consensus_sequence	1
array	1
data_analysis_software	1
mrna	1
r	1
probe	1
regulation_of_gene_expression	1
roc	1
similarity	1
lentivirus	1
datasets	1
tiling	1
virtualscreening	1
elements	1

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