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	The UCSC Genome Browser Database: update 2009 [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D755-761. by R. M. Kuhn, D. Karolchik, A. S. Zweig, et al.T. Wang, K. E. Smith, K. R. Rosenbloom, B. Rhead, B. J. Raney, A. Pohl, M. Pheasant, L. Meyer, F. Hsu, A. S. Hinrichs, R. A. Harte, B. Giardine, P. Fujita, M. Diekhans, T. Dreszer, H. Clawson, G. P. Barber, D. Haussler, W. J. Kent posted to motifmap human genomics genome genes datasets data computational chromosome biology bioinformatics by kmdaily on 2009-11-06 00:15:39 as along with 3 people taroleo cpwardell jfr
	Efficient computation of absent words in genomic sequences [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (26 March 2008), 167. by Julia Herold, Stefan Kurtz, Robert Giegerich posted to suffix_trees repeats regulatory motif metrics genomics genome computational bioinformatics algorithms by kmdaily on 2009-10-08 22:51:06 as along with 3 people operon xili03 langmead
	MotifMap: a human genome-wide map of candidate regulatory motif sites [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 167-174. by Xiaohui Xie, Paul Rigor, Pierre Baldi posted to baldi computational genome genomics motif motifdiscoveryproject motifmap by kmdaily on 2009-07-14 22:54:03 as along with 12 people bsamal jakebiesinger guhjy wowalz ilyashl jfr abizar heliopais nklee idonaldson nuin djkt
	An algorithm for finding novel gapped motifs in DNA sequences [My Copy] In RECOMB '98: Proceedings of the second annual international conference on Computational molecular biology (1998), pp. 228-233. by Emily Rocke, Martin Tompa posted to algorithms bioinformatics computational genomics motif motifdiscoveryproject projects regulatory by kmdaily on 2009-06-04 01:23:11 as
	Finding Subtle Motifs by Branching from Sample Strings [My Copy] (2003) by Alkes Price, Sriram Ramabhadran, Pavel A. Pevzner posted to algorithms bioinformatics computational genomics machinelearning motif motifdiscoveryproject projects search by kmdaily on 2009-06-04 01:14:18 as
	Extending Pattern Branching to Handle Challenging Instances [My Copy] BioInformatics and BioEngineering, 2006. BIBE 2006. Sixth IEEE Symposium on In BioInformatics and BioEngineering, 2006. BIBE 2006. Sixth IEEE Symposium on (2006), pp. 65-69. by J. Davila, S. Rajasekaran posted to algorithms bioinformatics computational genomics motif motifdiscoveryproject projects regulatory research by kmdaily on 2009-06-04 01:13:10 as
	Transcriptional Regulatory Networks in Saccharomyces cerevisiae [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804. by Tong I. Lee, Nicola J. Rinaldi, Francois Robert, et al.Duncan T. Odom, Ziv Bar-Joseph, Georg K. Gerber, Nancy M. Hannett, Christopher T. Harbison, Craig M. Thompson, Itamar Simon, Julia Zeitlinger, Ezra G. Jennings, Heather L. Murray, D. Benjamin Gordon, Bing Ren, John J. Wyrick, Jean-Bosco Tagne, Thomas L. Volkert, Ernest Fraenkel, David K. Gifford, Richard A. Young posted to baldi bioinformatics biology computational data genome genomics motifmap projects regulatory sandmeyer sandmeyerproject transcription yeast by kmdaily on 2009-05-27 23:57:18 as along with 32 people and 2 groups viren4388 mjoach kinop junehlee lillo80 camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 roys njcitulike brant kristallreiner Borelli Takayuki dquest siebert dbk-lab TNT
	The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications [My Copy] Nucleic Acids Research, Vol. 34, No. 6. (2006), pp. 1816-1835. by Christian Marck, Rym Kachouri-Lafond, Ingrid Lafontaine, Eric Westhof, Bernard Dujon, Henri Grosjean posted to baldi biology computational genome genomics projects regulatory sandmeyer sandmeyerproject transcription ty3 yeast by kmdaily on 2009-05-27 23:49:47 as
	Testing significance relative to a fold-change threshold is a TREAT. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 765-771. by Davis J. McCarthy, Gordon K. Smyth posted to analysis bayesian bioinformatics computational data genomics by kmdaily on 2009-03-30 23:20:12 as along with 12 people and 1 group shikin jfr VGreiff lwaldron rschulz rdiaz heliopais dswan bertelsen guhjy renatomilani paszkows Bioinformatics
	Optimized design and assessment of whole genome tiling arrays. [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007) by Stefan Gräf, Fiona G G G. Nielsen, Stefan Kurtz, et al.Martijn A A. Huynen, Ewan Birney, Henk Stunnenberg, Paul Flicek posted to algorithms array bioinformatics biology computational genome genomics probe repeats tiling by kmdaily on 2009-02-14 08:10:27 as along with 1 group Bioinformatics
	Natural similarity measures between position frequency matrices with an application to clustering [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 350-357. by Utz J. Pape, Sven Rahmann, Martin Vingron posted to algorithms bioinformatics biology computational genome genomics metrics regulatory transcription by kmdaily on 2008-08-12 02:17:19 as along with 5 people bsamal nklee maximilianh mclarenv csdhwang
	ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements [My Copy] Genome Res. (19 October 2006), gr.4537706. by James Taylor, Svitlana Tyekucheva, David C. King, Ross C. Hardison, Webb Miller, Francesca Chiaromonte posted to algorithms bioinformatics biology chromosome computational datamining genome genomics machinelearning motif regulatory search transcription by kmdaily on 2007-12-07 17:51:10 as along with 1 person timflutre
	The UCSC Known Genes [My Copy] Bioinformatics, Vol. 22, No. 9. (24 February 2006), pp. btl048-1046. by Fan Hsu, W. James Kent, Hiram Clawson, Robert M. Kuhn, Mark Diekhans, David Haussler posted to bioinformatics biology computational genome genomics research transcription by kmdaily on 2007-12-06 18:26:04 as along with 5 people manduca nedwards wenhan antonkratz rschulz
	Computational detection and location of transcription start sites in mammalian genomic DNA. [My Copy] Genome research, Vol. 12, No. 3. (1 March 2002), pp. 458-461. by T. A. Down, T. J. Hubbard posted to bioinformatics biology computational genome genomics motif regulatory research search transcription by kmdaily on 2007-12-04 07:02:47 as along with 4 people timhubbard tonamswish smiddha olympos
	Evaluating Virtual Screening Methods: Good and Bad Metrics for the “Early Recognition” Problem [My Copy] Journal of Chemical Information and Modeling, Vol. 47, No. 2. (1 March 2007), pp. 488-508. by Jean-Francois Truchon, Christopher I. Bayly posted to analysis bedroc cheminformatics computational data datamining metrics ranking virtualscreening by kmdaily on 2007-10-08 18:23:46 as along with 3 people BragilMassoud baldigroup sithmein
	EXMOTIF: Efficient Structured Motif Extraction [My Copy] Algorithms for Molecular Biology, Vol. 1 (16 November 2006), 21. by Yongqiang Zhang, Mohammed J. Zaki posted to algorithms chromosome computational genome genomics motif regulatory search by kmdaily on 2007-10-04 22:57:23 as along with 1 person wowalz
	A Primer on Learning in Bayesian Networks for Computational Biology [My Copy] PLoS Comput Biol, Vol. 3, No. 8. (31 August 2007), e129. by Chris J. Needham, James R. Bradford, Andrew J. Bulpitt, David R. Westhead posted to analysis bayesian bioinformatics biology computational networks research by kmdaily on 2007-09-04 20:51:56 as along with 18 people and 1 group Jporci colm abhishek_tiwari kshameer tonamswish Borelli toerst aviad_work druvus giovenko jo_davies balicea macle GeeSharpMinor firoozye sobolevnrm bmaust schelhorn baker-group
	Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches. [My Copy] Genome Res, Vol. 17, No. 6. (June 2007), pp. 807-817. by V. X. Jin, H. O'geen, S. Iyengar, R. Green, P. J. Farnham posted to bioinformatics computational genome genomics regulatory research by kmdaily on 2007-08-13 22:59:52 as along with 3 people and 1 group kengg cjeans ghattem Plantandetc

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genomics	45
genome	43
bioinformatics	40
biology	35
regulatory	23
transcription	21
computational	18
motif	17
baldi	15
research	15
sandmeyerproject	14
projects	13
sandmeyer	12
yeast	12
algorithms	11
ty3	10
motifmap	8
analysis	7
cinquinproject	6
search	6
transposon	5
data	5
worm	5
nematode	5
chromosome	4
mirna	4
motifdiscoveryproject	4
datamining	4
genes	3
networks	3
machinelearning	3
retrovirus	3
metrics	3
transposable	2
repeats	2
condensin	2
ranking	2
cheminformatics	2
bayesian	2
human	2
tfiiia	2
trna	2
hts	1
sequencing	1
regulatory_mechanisms	1
cancer	1
bedroc	1
molecules	1
evolution	1
suffix_trees	1
rearrangement	1
virus	1
proteins	1
consensus_sequence	1
array	1
data_analysis_software	1
mrna	1
r	1
probe	1
regulation_of_gene_expression	1
roc	1
similarity	1
lentivirus	1
datasets	1
tiling	1
virtualscreening	1
elements	1

kmdaily's computational [18 articles] Export

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