knaseanka's library 95 articles Export

	Analyzing Large Data Sets in Reasonable Times: Solutions for Composite Optima [My Copy] Cladistics, Vol. 15, No. 4. (1999), pp. 415-428. by Pablo A. Goloboff posted to phylogeny proj-alphamito-2 by knaseanka on 2007-04-24 08:14:54 as along with 1 person lizbiogen
	Data exploration in phylogenetic inference: scientific, heuristic, or neither [My Copy] Cladistics, Vol. 19, No. 5. (2003), pp. 379-418. by Taran Grant, Arnold G. Kluge posted to phylogeny proj-alphamito-2 by knaseanka on 2007-04-24 08:13:54 as along with 1 person Thaverkamp
	Changing the landscape: a new strategy for estimating large phylogenies. [My Copy] Syst Biol, Vol. 50, No. 1. (February 2001), pp. 60-66. by D. L. Quicke, J. Taylor, A. Purvis posted to phylogeny proj-alphamito-2 by knaseanka on 2007-04-24 08:12:09 as
	Origin and Evolution of the Mitochondrial Aminoacyl-tRNA Synthetases. [My Copy] Mol Biol Evol (20 December 2006) by Björn Brindefalk, Johan Viklund, Daniel Larsson, Mikael Thollesson, Siv G E G. Andersson posted to mine proj-alphamito sub-biology sub-mitocondrie by knaseanka on 2007-01-07 20:54:03 as
	The evolutionary fate and consequences of duplicate genes. [My Copy] Science (New York, N.Y.), Vol. 290, No. 5494. (10 November 2000), pp. 1151-1155. by M. Lynch, J. S. Conery posted to birth death duplication sub-bioinformatics by knaseanka on 2006-12-18 12:51:19 as along with 12 people and 1 group codonusage operon thegoose2 azazello tharris arve nirfriedman echinotrix treangen timflutre BioNica clearbluespring C. elegans / WormBase
	A basic result on the integral for birth-death Markov processes. [My Copy] Math Biosci, Vol. 161, No. 1-2. (October 1999), pp. 95-104. by C. M. Hernández-Suárez, C. Castillo-Chavez posted to birth death mathematics stochastic sub-bioinformatics by knaseanka on 2006-12-15 10:26:03 as
	Extinction times for a birth-death process with two phases. [My Copy] Math Biosci, Vol. 202, No. 2. (August 2006), pp. 310-322. by J. V. Ross, P. K. Pollett posted to birth death mathematics stochastic sub-bioinformatics by knaseanka on 2006-12-15 10:24:58 as
	Modeling genome evolution with a diffusion approximation of a birth-and-death process. [My Copy] Bioinformatics, Vol. 21 Suppl 3 (1 November 2005) by G. P. Karev, F. S. Berezovskaya, E. V. Koonin posted to birth death stochastic sub-bioinformatics by knaseanka on 2006-12-15 10:24:30 as along with 1 group iSEEM
	Simple stochastic birth and death models of genome evolution: was there enough time for us to evolve? [My Copy] Bioinformatics, Vol. 19, No. 15. (12 October 2003), pp. 1889-1900. by G. P. Karev, Y. I. Wolf, E. V. Koonin posted to birth death stochastic sub-bioinformatics by knaseanka on 2006-12-15 10:24:13 as
	Birth and death of protein domains: A simple model of evolution explains power law behavior [My Copy] BMC Evolutionary Biology, Vol. 2, No. 1. (2002), 18. by Georgy Karev, Yuri Wolf, Andrey Rzhetsky, Faina Berezovskaya, Eugene Koonin posted to birth death stochastic sub-bioinformatics by knaseanka on 2006-12-15 10:23:53 as along with 2 people jameswasmuth martainn
	Gene family evolution: an in-depth theoretical and simulation analysis of non-linear birth-death-innovation models. [My Copy] BMC Evol Biol, Vol. 4 (9 September 2004) by G. P. Karev, Y. I. Wolf, F. S. Berezovskaya, E. V. Koonin posted to birth death stochastic sub-bioinformatics by knaseanka on 2006-12-15 10:09:08 as along with 1 person ruvido
	Genome-scale approaches to resolving incongruence in molecular phylogenies [My Copy] Nature, Vol. 425, No. 6960. (23 October 2003), pp. 798-804. by Antonis Rokas, Barry L. Williams, Nicole King, Sean B. Carroll posted to sub-phylogenetics by knaseanka on 2006-12-11 15:42:23 as along with 7 people and 1 group skembel biomcgary nlapalu druvus aprasad AaronDarling srfairclough iSEEM
	From Gene Trees to Organismal Phylogeny in Prokaryotes:The Case of the γ-Proteobacteria [My Copy] PLoS Biol, Vol. 1, No. 1. (15 September 2003), e19. by Emmanuelle Lerat, Vincent Daubin, Nancy A. Moran posted to sub-phylogenetics by knaseanka on 2006-12-11 15:40:35 as along with 5 people danatcaret Thaverkamp AaronDarling treangen fhsantanna
	Clann: investigating phylogenetic information through supertree analyses. [My Copy] Bioinformatics, Vol. 21, No. 3. (1 February 2005), pp. 390-392. by C. J. Creevey, J. O. McInerney posted to sub-phylogenetics by knaseanka on 2006-12-11 15:00:24 as
	DPRml: distributed phylogeny reconstruction by maximum likelihood. [My Copy] Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 969-974. by T. M. Keane, T. J. Naughton, S. A. Travers, J. O. McInerney, G. P. McCormack posted to sub-phylogenetics by knaseanka on 2006-12-11 13:57:28 as along with 1 person rdiaz
	GENOME TREES AND THE NATURE OF GENOME EVOLUTION [My Copy] Annual Review of Microbiology, Vol. 59, No. 1. (2005), pp. 191-209. by Berend Snel, Martijn A. Huynen, Bas E. Dutilh posted to sub-bioinformatics by knaseanka on 2006-12-08 15:18:48 as along with 5 people pablocarb inquil ssgong aprasad dayjm
	Quality assessment of multiple alignment programs. [My Copy] FEBS Lett, Vol. 529, No. 1. (2 October 2002), pp. 126-130. by T. Lassmann, E. L. Sonnhammer posted to sub-bioinformatics by knaseanka on 2006-11-29 12:05:53 as along with 2 people BioNica major724
	Kalign--an accurate and fast multiple sequence alignment algorithm. [My Copy] BMC bioinformatics, Vol. 6 (2005) by Timo Lassmann, Erik L. Sonnhammer posted to sub-bioinformatics by knaseanka on 2006-11-29 12:05:11 as along with 7 people maria_hauser Thaverkamp BioNica johanviklund aalibes CharlesM Haggan
	MUSCLE: a multiple sequence alignment method with reduced time and space complexity [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (19 August 2004), 113. by Robert Edgar posted to sub-bioinformatics by knaseanka on 2006-11-29 12:04:33 as along with 30 people and 5 groups tomatoe45 rneches gwallau OscarLopez ivanffcc Helenita Joaquin kmma13 khlevy Pal tomjad mgomes hryk BioNica natstreet Md_2007 sebk wallacei chrn jwm balajis gbart caporaso sriram_s cdallett sanchezbuelna timflutre gisle urgi Ema LabDros References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp
	Toward Automatic Reconstruction of a Highly Resolved Tree of Life [My Copy] Science, Vol. 311, No. 5765. (3 March 2006), pp. 1283-1287. by Francesca D. Ciccarelli, Tobias Doerks, Christian von Mering, Christopher J. Creevey, Berend Snel, Peer Bork posted to sub-bioinformatics sub-phylogenetics by knaseanka on 2006-11-28 15:51:50 as along with 20 people and 6 groups pablocarb cmura adampah druvus fhsantanna kinestetika dparks Retchless dpollard tny dchughes nirfriedman cmm azazello wenhan maximilianh cmzmasek lonshy diamantis Ema microbiology_nijmegen EisenLab FAB-lab G4ID Genetics-of-Gambling MBLAB
	Large Punctuational Contribution of Speciation to Evolutionary Divergence at the Molecular Level [My Copy] Science, Vol. 314, No. 5796. (6 October 2006), pp. 119-121. by Mark Pagel, Chris Venditti, Andrew Meade posted to sub-phylogenetics type-journal_club by knaseanka on 2006-11-06 09:59:24 as along with 5 people and 2 groups vtraag brant bpcusack shikin rvosa EisenLab FAB-lab
	Epigenetic Gene Regulation in the Bacterial World [My Copy] Microbiol. Mol. Biol. Rev., Vol. 70, No. 3. (1 September 2006), pp. 830-856. by Josep Casadesus, David Low posted to sub-alphaprot by knaseanka on 2006-09-22 09:41:47 as along with 3 people Winzer cambray jasonflannick
	Adaptive evolution of bacterial metabolic networks by horizontal gene transfer [My Copy] Nature Genetics, Vol. 37, No. 12. (20 November 2005), pp. 1372-1375. by Csaba Pál, Balázs Papp, Martin J. Lercher posted to sub-orfans by knaseanka on 2006-08-24 10:33:38 as along with 4 people and 1 group mikheyev icases tny michaelbarton TNT
	Patterns of bacterial gene movement. [My Copy] Mol Biol Evol, Vol. 21, No. 7. (July 2004), pp. 1294-1307. by W. Hao, G. B. Golding posted to sub-orfans by knaseanka on 2006-08-24 08:58:38 as along with 1 person LeightonP
	The fate of laterally transferred genes: life in the fast lane to adaptation or death. [My Copy] Genome Res, Vol. 16, No. 5. (May 2006), pp. 636-643. by W. Hao, G. B. Golding posted to sub-orfans by knaseanka on 2006-08-24 08:11:11 as along with 2 people operon treangen
	Computational inference of scenarios for alpha-proteobacterial genome evolution. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 26. (29 June 2004), pp. 9722-9727. by B. Boussau, E. O. Karlberg, A. C. Frank, B. A. Legault, S. G. Andersson posted to sub-alphaprot by knaseanka on 2006-07-25 10:01:32 as along with 3 people johanviklund bjorns radek
	The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 26. (29 June 2004), pp. 9716-9721. by C. M. Alsmark, A. C. Frank, E. O. Karlberg, et al.B. A. Legault, D. H. Ardell, B. Canbäck, A. S. Eriksson, A. K. Näslund, S. A. Handley, M. Huvet, B. La Scola, M. Holmberg, S. G. Andersson posted to sub-alphaprot by knaseanka on 2006-07-25 10:00:41 as along with 4 people johanviklund operon bjorns shandley
	Complete genome sequencing of Anaplasma marginale reveals that the surface is skewed to two superfamilies of outer membrane proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 3. (18 January 2005), pp. 844-849. by K. A. Brayton, L. S. Kappmeyer, D. R. Herndon, et al.M. J. Dark, D. L. Tibbals, G. H. Palmer, T. C. McGuire, D. P. Knowles posted to sub-alphaprot by knaseanka on 2006-07-25 09:59:54 as along with 1 person bjorns
	The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 3. (18 January 2005), pp. 838-843. by N. E. Collins, J. Liebenberg, E. P. de Villiers, et al.K. A. Brayton, E. Louw, A. Pretorius, F. E. Faber, H. van Heerden, A. Josemans, M. van Kleef, H. C. Steyn, M. F. van Strijp, E. Zweygarth, F. Jongejan, J. C. Maillard, D. Berthier, M. Botha, F. Joubert, C. H. Corton, N. R. Thomson, M. T. Allsopp, B. A. Allsopp posted to sub-alphaprot by knaseanka on 2006-07-25 09:59:21 as
	The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode. [My Copy] PLoS Biol, Vol. 3, No. 4. (April 2005) by J. Foster, M. Ganatra, I. Kamal, et al.J. Ware, K. Makarova, N. Ivanova, A. Bhattacharyya, V. Kapatral, S. Kumar, J. Posfai, T. Vincze, J. Ingram, L. Moran, A. Lapidus, M. Omelchenko, N. Kyrpides, E. Ghedin, S. Wang, E. Goltsman, V. Joukov, O. Ostrovskaya, K. Tsukerman, M. Mazur, D. Comb, E. Koonin, B. Slatko posted to sub-alphaprot by knaseanka on 2006-07-25 09:58:33 as along with 1 person operon
	Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. [My Copy] PLoS Biol, Vol. 2, No. 3. (March 2004) by M. Wu, L. V. Sun, J. Vamathevan, et al.M. Riegler, R. Deboy, J. C. Brownlie, E. A. McGraw, W. Martin, C. Esser, N. Ahmadinejad, C. Wiegand, R. Madupu, M. J. Beanan, L. M. Brinkac, S. C. Daugherty, A. S. Durkin, J. F. Kolonay, W. C. Nelson, Y. Mohamoud, P. Lee, K. Berry, M. B. Young, T. Utterback, J. Weidman, W. C. Nierman, I. T. Paulsen, K. E. Nelson, H. Tettelin, S. L. O'Neill, J. A. Eisen posted to sub-alphaprot by knaseanka on 2006-07-25 09:57:51 as along with 3 people and 1 group operon radek wrowell Cline_lab
	Spectral clustering of protein sequences. [My Copy] Nucleic Acids Res, Vol. 34, No. 5. (2006), pp. 1571-1580. by A. Paccanaro, J. A. Casbon, M. A. Saqi posted to sub-bioinformatics subsub-clustering subsub-method by knaseanka on 2006-06-22 13:02:46 as along with 1 person bobychan
	An efficient algorithm for large-scale detection of protein families [My Copy] Nucl. Acids Res., Vol. 30, No. 7. (1 April 2002), pp. 1575-1584. by A. J. Enright, S. Van Dongen, C. A. Ouzounis posted to proj-alphaspec sub-bioinformatics subsub-clustering subsub-method by knaseanka on 2006-06-22 12:07:36 as along with 22 people and 2 groups jperkins calderonv nedwards dakelley druvus treangen carlk cgaugain johanviklund chad_davis camster operon indigoviolet skhadar nirfriedman dgront entropy gcalda GustavoLacerda hpaces RebeccaHamer Borelli dbk-lab EisenLab
	Degenerative evolution and functional diversification of type-III secretion systems in the insect endosymbiont Sodalis glossinidius. [My Copy] Mol Biol Evol, Vol. 22, No. 3. (March 2005), pp. 758-766. by C. Dale, T. Jones, M. Pontes posted to sub-biology subsub-evolution ttss by knaseanka on 2006-05-23 14:05:38 as
	Type III secretion systems and the evolution of mutualistic endosymbiosis. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 19. (17 September 2002), pp. 12397-12402. by C. Dale, G. R. Plague, B. Wang, H. Ochman, N. A. Moran posted to sub-biology subsub-evolution ttss by knaseanka on 2006-05-23 14:03:05 as along with 2 people gelack manzanita
	Bacterial flagella and type III secretion systems. [My Copy] FEMS Microbiol Lett, Vol. 202, No. 2. (21 August 2001), pp. 157-164. by S. I. Aizawa posted to flagella sub-biology subsub-evolution ttss by knaseanka on 2006-05-23 13:49:59 as along with 1 person cam-flagella
	Type III protein secretion systems in bacterial pathogens of animals and plants. [My Copy] Microbiology and molecular biology reviews : MMBR, Vol. 62, No. 2. (June 1998), pp. 379-433. by C. J. Hueck posted to sub-biology subsub-evolution ttss by knaseanka on 2006-05-23 13:33:03 as along with 4 people katholt bjorns robert manzanita
	Acquisition and Evolution of the exoU Locus in Pseudomonas aeruginosa. [My Copy] J Bacteriol, Vol. 188, No. 11. (June 2006), pp. 4037-4050. by B. R. Kulasekara, H. D. Kulasekara, M. C. Wolfgang, L. Stevens, D. W. Frank, S. Lory posted to sub-biology subsub-evolution ttss by knaseanka on 2006-05-23 13:29:45 as
	Secretory compartments as instances of dynamic self-evolving structures. [My Copy] Acta Biotheor, Vol. 50, No. 4. (2002), pp. 209-221. by F. Képès posted to sub-biology subsub-evolution ttss by knaseanka on 2006-05-23 13:18:13 as
	A directed evolution strategy for optimized export of recombinant proteins reveals critical determinants for preprotein discharge. [My Copy] Protein Sci, Vol. 13, No. 9. (September 2004), pp. 2458-2469. by M. A. Kaderbhai, H. M. Davey, N. N. Kaderbhai posted to sub-biology subsub-evolution ttss by knaseanka on 2006-05-23 13:13:02 as
	Bacterial type III secretion systems are ancient and evolved by multiple horizontal-transfer events. [My Copy] Gene, Vol. 312 (17 July 2003), pp. 151-163. by U. Gophna, E. Z. Ron, D. Graur posted to sub-biology subsub-evolution ttss by knaseanka on 2006-05-23 12:55:38 as
	Characterization of the ysa pathogenicity locus in the chromosome of Yersinia enterocolitica and phylogeny analysis of type III secretion systems. [My Copy] J Mol Evol, Vol. 55, No. 1. (July 2002), pp. 37-51. by B. Foultier, P. Troisfontaines, S. Müller, F. R. Opperdoes, G. R. Cornelis posted to sub-biology subsub-evolution subsub-phylogeny ttss by knaseanka on 2006-05-23 12:42:54 as
	Signature proteins that are distinctive of alpha proteobacteria. [My Copy] BMC Genomics, Vol. 6 (2005) by P. Kainth, R. S. Gupta posted to proj-alphaspec sub-alphaprot by knaseanka on 2006-05-04 09:41:37 as along with 1 person johanviklund
	Enrichment for microbes living in association with plant tissues [My Copy] Journal of Applied Microbiology, Vol. 100, No. 4. (April 2006), pp. 830-837. by J. Y. Jiao, H. X. Wang, Y. Zeng, Y. M. Shen posted to sub-metagenomics subsub-method by knaseanka on 2006-03-27 07:52:25 as
	The Genome Sequence of Rickettsia felis Identifies the First Putative Conjugative Plasmid in an Obligate Intracellular Parasite. [My Copy] PLoS Biol, Vol. 3, No. 8. (August 2005) by H. Ogata, P. Renesto, S. Audic, et al.C. Robert, G. Blanc, P. E. Fournier, H. Parinello, J. M. Claverie, D. Raoult posted to sub-alphaprot by knaseanka on 2006-03-27 07:50:18 as along with 1 person bjorns
	An application of statistics to comparative metagenomics. [My Copy] BMC bioinformatics, Vol. 7, No. 1. (20 March 2006) by Beltran Rodriguez-Brito, Forest Rohwer, Robert A. Edwards posted to sub-bioinformatics sub-metagenomics by knaseanka on 2006-03-24 12:11:55 as along with 7 people and 1 group taylor73 Thaverkamp jmeppley druvus bluto carpi djkt iSEEM
	A molecular revolution in the study of intestinal microflora. [My Copy] Gut, Vol. 55, No. 2. (February 2006), pp. 141-143. by E. Furrie posted to sub-metagenomics by knaseanka on 2006-03-24 07:13:10 as
	Bioinformatic Insights from Metagenomics through Visualization. [My Copy] Proc IEEE Comput Syst Bioinform Conf, Vol. 4 (2005), pp. 341-350. by Susan L. Havre, Bobbie-Jo J. Webb-Robertson, Anuj Shah, Christian Posse, Banu Gopalan, Fred J. Brockman posted to sub-bioinformatics subsub-visualization by knaseanka on 2006-03-24 07:12:02 as along with 3 people jmeppley Schmidtc eweaver
	Metaproteomics: studying functional gene expression in microbial ecosystems. [My Copy] Trends Microbiol, Vol. 14, No. 2. (February 2006), pp. 92-97. by P. Wilmes, P. L. Bond posted to sub-metagenomics sub-metaproteomics by knaseanka on 2006-03-24 07:11:07 as along with 8 people idoerg alonexiu Yanno jmeppley bluto nitiniitk barberan mcox
	Comparative analysis of environmental sequences: potential and challenges. [My Copy] Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1467. (29 March 2006), pp. 519-523. by K. U. Foerstner, C. von Mering, P. Bork posted to sub-metagenomics type-review by knaseanka on 2006-03-24 07:04:55 as

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death	7
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knaseanka's library 95 articles Export

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