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	Domain-Specific CLIR of English, German and Russian Using Fusion and Subject Metadata for Query Expansion [My Copy] Accessing Multilingual Information Repositories (2006), pp. 226-237. by Vivien Petras, Fredric Gey, Ray Larson posted to humor_project by lfriedl on 2008-02-08 03:09:32 as
	Discovering large dense subgraphs in massive graphs [My Copy] In VLDB '05: Proceedings of the 31st international conference on Very large data bases (2005), pp. 721-732. by David Gibson, Ravi Kumar, Andrew Tomkins posted to toread-thickets by lfriedl on 2007-12-14 23:05:36 as along with 9 people and 2 groups thegoose tmmurali ChaTo schaal srinaths Sundar bigbossman xiaoyan2006 kevinemamy VT_DLRL oktave-labs
	The Problem of Patent Thickets in Convergent Technologies [My Copy] Ann NY Acad Sci, Vol. 1093, No. 1. (1 December 2006), pp. 180-200. by Gavin Clarkson, David Dekorte posted to toread-thickets by lfriedl on 2007-12-03 05:30:20 as
	Robustness of community structure in networks [My Copy] (13 Sep 2007) by Brian Karrer, Elizaveta Levina, M. E. J. Newman posted to clustering social_network_analysis by lfriedl on 2007-10-29 19:22:07 as along with 6 people mussi cgaugain lshaw ibschwartz ilkert compbio
	Marginal modelling of multivariate categorical data [My Copy] Statistics in Medicine, Vol. 18, No. 17-18. (1999), pp. 2237-2255. by Geert Molenberghs, Emmanuel Lesaffre posted to tribes by lfriedl on 2007-07-31 03:51:26 as along with 1 person and 1 group chzch kdl
	Longitudinal Data Analysis for Discrete and Continuous Outcomes [My Copy] Biometrics, Vol. 42, No. 1. (1986), pp. 121-130. by Scott L. Zeger, Kung-Yee Liang posted to tribes by lfriedl on 2007-07-24 22:36:12 as along with 1 group kdl
	Network motif identification in stochastic networks [My Copy] PNAS, Vol. 103, No. 25. (20 June 2006), pp. 9404-9409. by Rui Jiang, Zhidong Tu, Ting Chen, Fengzhu Sun posted to bio graph_based_analysis ppi by lfriedl on 2006-06-21 19:07:31 as along with 3 people and 2 groups dlobo jaspervoskuilen wei_tang GEB kdl
	TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics. [My Copy] Nucleic Acids Res, Vol. 32, No. 1. (2004), pp. 328-337. by H. Yu, X. Zhu, D. Greenbaum, J. Karro, M. Gerstein posted to bio graph_based_analysis by lfriedl on 2006-04-25 16:12:38 as along with 3 people and 1 group nzm carlk IbnBio kdl
	Combining biological networks to predict genetic interactions. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 44. (2 November 2004), pp. 15682-15687. by S. L. Wong, L. V. Zhang, A. H. Tong, et al.Z. Li, D. S. Goldberg, O. D. King, G. Lesage, M. Vidal, B. Andrews, H. Bussey, C. Boone, F. P. Roth posted to bio multiple_data_sources by lfriedl on 2006-04-09 03:22:56 as along with 7 people and 3 groups dbk balajis wnpx reidy eukfn patrycja_missiuro ksiek streptomyces dbk-lab kdl
	Protein complex prediction via cost-based clustering [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3013-3020. by A. D. King, N. Przulj, I. Jurisica posted to bio clustering graph_based_analysis ppi by lfriedl on 2006-04-09 03:01:46 as along with 7 people and 1 group adking80 jiny maralena hryk cerca carlk ethkim kdl
	Predicting interactions in protein networks by completing defective cliques. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 7. (1 April 2006), pp. 823-829. by Haiyuan Yu, Alberto Paccanaro, Valery Trifonov, Gerstein Mark posted to bio graph_based_analysis ppi by lfriedl on 2006-04-09 02:59:19 as along with 4 people and 2 groups paccanarolab jiny Borelli carlk Paccanaro Lab kdl
	Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction [My Copy] Current Opinion in Microbiology, Vol. 7, No. 5. (October 2004), pp. 535-545. by R. Jansen, M. Gerstein posted to bio predict_function by lfriedl on 2005-09-29 14:30:14 as along with 6 people and 2 groups flbarroso okarsligil wnpx neils grahamc carlk kdl Bioinformatics
	Gaining confidence in high-throughput protein interaction networks. [My Copy] Nature biotechnology, Vol. 22, No. 1. (January 2004), pp. 78-85. by J. S. Bader, A. Chaudhuri, J. M. Rothberg, J. Chant posted to bio ppi by lfriedl on 2005-08-29 22:24:00 as along with 17 people and 1 group aceol carlk chica anf dakelley lawraga wenhui ocs dragonrez gurkanbebek raiyar cjeans iris_2001 patrycjam patrycja_missiuro Evangelia ellakat kdl
	Understanding Belief Propagation and its Generalizations [My Copy] No. 22. (January 2001) by Jonathan S. Yedidia, William T. Freeman, Yair Weiss posted to ml_technique review by lfriedl on 2008-03-11 05:01:31 as
	Faster solutions of the inverse pairwise Ising problem [My Copy] (15 Dec 2007) by Tamara Broderick, Miroslav Dudik, Gasper Tkacik, Robert E. Schapire, William Bialek posted to toread-tribes by lfriedl on 2008-02-13 22:29:50 as
	Beyond centrality—classifying topological significance using backup efficiency and alternative paths [My Copy] New J. Phys., Vol. 9, No. 8. (August 2007), 266. by Yuval Shavitt, Yaron Singer posted to toread-social_network_analysis by lfriedl on 2007-10-29 19:06:01 as
	Statistical Analysis of Correlated Data Using Generalized Estimating Equations: An Orientation [My Copy] Am. J. Epidemiol., Vol. 157, No. 4. (15 February 2003), pp. 364-375. by James A. Hanley, Abdissa Negassa, Michael D. Edwardes, Janet E. Forrester posted to tribes by lfriedl on 2007-07-24 22:40:55 as along with 3 people and 1 group PaperCollector kerri3278 guhjy kdl
	Problems with Fitting to the Power-Law Distribution [My Copy] (13 August 2004) by Michel L. Goldstein, Steven A. Morris, Gary G. Yen posted to parameter_estimation by lfriedl on 2007-03-27 22:02:42 as along with 13 people and 4 groups jfelipe camster snuppepuppan nettraq pboothe korakot sccook rmj001 brian elsantosneto proportional tuttle Minty Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl
	Supervised graph inference [My Copy] In Advances in Neural Information Processing Systems (2005), pp. 1433-1440. by Jean-Philippe Vert, Yoshihiro Yamanishi posted to link_prediction by lfriedl on 2007-02-20 07:34:48 as along with 1 person and 1 group wnpx kdl
	For Yeast Protein Hubs, More Data Means More Connections [My Copy] PLoS Biology, Vol. 4, No. 10. (1 October 2006) by Richard Robinson posted to bio ppi by lfriedl on 2006-09-29 04:20:24 as along with 1 group kdl
	Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae [My Copy] Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11. by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, et al.Bobby J. Breitkreutz, Gary Hon, Chad Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga Troyanskya, Trey Ideker, Kara Dolinski, Nizar Batada, Mike Tyers posted to bio ppi by lfriedl on 2006-09-29 04:17:51 as along with 18 people and 3 groups carlk snuppepuppan tmmurali balajis wnpx nickluscombe egralla citecat noano koller grahamc iris_2001 sgoetz shikin s041629 pmendes mtruksa chasmand kdl EBI-regulation GeneGo
	A direct comparison of protein interaction confidence assignment schemes [My Copy] BMC Bioinformatics, Vol. 7 (26 July 2006), 360. by Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker posted to bio ppi by lfriedl on 2006-09-29 04:17:06 as along with 7 people and 1 group anf roys tmmurali balajis gurkanbebek IbnBio iris_2001 kdl
	A data integration methodology for systems biology. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 48. (29 November 2005), pp. 17296-17301. by D. Hwang, A. G. Rust, S. Ramsey, et al.J. J. Smith, D. M. Leslie, A. D. Weston, P. de Atauri, J. D. Aitchison, L. Hood, A. F. Siegel, H. Bolouri posted to bio multiple_data_sources by lfriedl on 2006-06-29 22:21:04 as along with 22 people and 4 groups shigepong daforerog shikin jimineep ggallone brian tmmurali dragonrez okarsligil jfr Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor nedwards athleem Jarman Lab kdl Bioinformatics JJJ
	Random graphs with arbitrary degree distributions and their applications [My Copy] (7 May 2001) by M. E. J. Newman, S. H. Strogatz, D. J. Watts posted to degree_distribution social_network_analysis by lfriedl on 2006-05-04 19:32:39 as along with 10 people and 3 groups kubyaddi korakot rmj001 mrm sugarexpletive jaspervoskuilen mbelinky ltabourier ransombriggs procesd Philosophy_of_Information Blog_and_Wiki_Research kdl
	Predicting co-complexed protein pairs using genomic and proteomic data integration [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (16 April 2004), 38. by Lan Zhang, Sharyl Wong, Oliver King, Frederick Roth posted to bio multiple_data_sources ppi by lfriedl on 2006-05-01 22:21:35 as along with 4 people and 1 group mpotamias reidy nedwards carlk kdl
	Global landscape of protein complexes in the yeast Saccharomyces cerevisiae [My Copy] Nature, Vol. 440, No. 7084. (22 March 2006), pp. 637-643. by Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, et al.Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P. Tikuisis, Thanuja Punna, JosÃ© M. PeregrÃn-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D. Robinson, Alberto Paccanaro, James E. Bray, Anthony Sheung, Bryan Beattie, Dawn P. Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M. Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R. Collins, Shamanta Chandran, Robin Haw, Jennifer J. Rilstone, Kiran Gandi, Natalie J. Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy H. Y. Lam, Gareth Butland, Amin M. Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S. Weissman, C. James Ingles, Timothy R. Hughes, John Parkinson, Mark Gerstein, Shoshana J. Wodak, Andrew Emili, Jack F. Greenblatt posted to bio high_throughput_dataset ppi by lfriedl on 2006-04-25 21:37:03 as along with 30 people and 5 groups aceol mpotamias paccanarolab ajbattle mgomes jxl bicko cerca jiny Borelli chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq Evangelia csaveanu frohike carlk hplatero chasmand mapplab ethkim Paccanaro Lab kdl EBI-regulation BioinfoCIPF SGU-CIPF
	Genomic analysis of regulatory network dynamics reveals large topological changes. [My Copy] Nature, Vol. 431, No. 7006. (16 September 2004), pp. 308-312. by N. M. Luscombe, M. M. Babu, H. Yu, M. Snyder, S. A. Teichmann, M. Gerstein posted to bio graph_based_analysis reconstruct_pathway by lfriedl on 2006-04-25 16:11:29 as along with 24 people and 8 groups joseph_x_zhou kentz behindtherabbit vertikalist camster snuppepuppan hununu icases lna alexg nirfriedman dgront nickluscombe kairita comb kengg gespim koller timflutre fishtank cjeans rebeccamancy faion carlk bioNetwork_sysBio BTS-PT-AS-CS dbk-lab kdl EBI-regulation TNT ColDyn Plantandetc
	Use of Logic Relationships to Decipher Protein Network Organization [My Copy] Science, Vol. 306, No. 5705. (24 December 2004), pp. 2246-2249. by Peter M. Bowers, Shawn J. Cokus, David Eisenberg, Todd O. Yeates posted to bio graph_based_analysis by lfriedl on 2006-04-09 03:42:46 as along with 4 people and 1 group jperkins mdimmic opheliav wnpx kdl
	Identification and analysis of evolutionarily cohesive functional modules in protein networks. [My Copy] Genome Res (31 January 2006) by Mónica Campillos, Christian von Mering, Lars Juhl J. Jensen, Peer Bork posted to bio clustering predict_function by lfriedl on 2006-04-09 03:40:00 as along with 8 people and 2 groups Garamonfok balajis nirfriedman nickluscombe koller dbgoodman larsjuhljensen carlk kdl EBI-regulation
	An Exponential Core in the Heart of the Yeast Protein Interaction Network [My Copy] Molecular Biology and Evolution, Vol. 22, No. 3. (March 2005), pp. 421-425. by Jose B. Pereira-Leal, Benjamin Audit, Jose M. Peregrin-Alvarez, Christos A. Ouzounis posted to bio graph_based_analysis ppi social_network_analysis by lfriedl on 2006-04-09 03:37:21 as along with 2 people and 1 group wilbur diamantis kdl
	Utilizing logical relationships in genomic data to decipher cellular processes. [My Copy] FEBS J, Vol. 272, No. 20. (October 2005), pp. 5110-5118. by P. M. Bowers, B. D. O'Connor, S. J. Cokus, E. Sprinzak, T. O. Yeates, D. Eisenberg posted to bio by lfriedl on 2006-04-09 03:35:14 as along with 1 person and 1 group koller kdl
	Changing perspectives in yeast research nearly a decade after the genome sequence. [My Copy] Genome Res, Vol. 15, No. 12. (December 2005), pp. 1611-1619. by K. Dolinski, D. Botstein posted to bio review by lfriedl on 2006-04-09 03:32:15 as along with 3 people and 1 group nirfriedman fishtank dmc kdl
	Topological structure analysis of the protein-protein interaction network in budding yeast [My Copy] Nucl. Acids Res., Vol. 31, No. 9. (1 May 2003), pp. 2443-2450. by Dongbo Bu, Yi Zhao, Lun Cai, et al.Hong Xue, Xiaopeng Zhu, Hongchao Lu, Jingfen Zhang, Shiwei Sun, Lunjiang Ling, Nan Zhang, Guojie Li, Runsheng Chen posted to bio graph_based_analysis ppi by lfriedl on 2006-04-09 03:19:24 as along with 6 people and 1 group jmenche cjeans iris_2001 carlk minostro ellakat kdl
	Rich probabilistic models for gene expression [My Copy] Bioinformatics In Bioinformatics, Vol. 17, No. suppl_1. (1 June 2001), pp. S243-252. by Eran Segal, Ben Taskar, Audrey Gasch, Nir Friedman, Daphne Koller posted to bio clustering by lfriedl on 2005-12-22 22:51:37 as along with 4 people and 1 group meanerelk balicea wnpx frohike kdl
	Global protein function annotation through mining genome-scale data in yeast Saccharomyces cerevisiae. [My Copy] Nucleic Acids Res, Vol. 32, No. 21. (2004), pp. 6414-6424. by Y. Chen, D. Xu posted to bio multiple_data_sources predict_function by lfriedl on 2005-09-29 03:39:56 as along with 3 people and 2 groups okarsligil balajis opheliav kdl Bioinformatics
	Can Patents Deter Innovation? The Anticommons in Biomedical Research [My Copy] Science, Vol. 280, No. 5364. (1 May 1998), pp. 698-701. by Michael A. Heller, Rebecca S. Eisenberg posted to thickets by lfriedl on 2007-10-30 04:10:54 as along with 2 people rosacastrob elsiatcase
	The exploration of new methods for learning in binary Boltzmann machines [My Copy] by K. Humphreys, D. M. Titterington posted to tribes by lfriedl on 2007-07-31 02:50:32 as along with 1 group kdl
	A regression relationship for multivariate paired comparisons [My Copy] Biometrika, Vol. 58, No. 3. (1 December 1971), pp. 555-560. by Roger R. Davidson, Ralph A. Bradley posted to tribes by lfriedl on 2007-07-24 18:03:09 as along with 1 group kdl
	Some applications of the Bahadur representation in estimating parameters of complex models [My Copy] by Keith Humphreys, David M. Titterington posted to tribes by lfriedl on 2007-07-19 06:03:18 as along with 1 group kdl
	Longitudinal data analysis using generalized linear models [My Copy] Biometrika, Vol. 73, No. 1. (1 April 1986), pp. 13-22. by Kung-Yee Liang, Scott L. Zeger posted to tribes by lfriedl on 2007-07-18 19:38:03 as along with 8 people and 1 group dcurtis buyske kerri3278 peterwyang simdoc brian kurtzhang cyberwulf kdl
	Measuring Differentiability: Unmasking Pseudonymous Authors [My Copy] Journal of Machine Learning Research, Vol. 8 (June 2007), pp. 1261-1276. by Moshe Koppel, Jonathan Schler, Elisheva; Bonchek-Dokow edited by Michael Collins posted to imbalanced_classes link_prediction by lfriedl on 2007-07-01 22:07:07 as along with 1 group kdl
	Multiple Graph Alignment for the Structural Analysis of Protein Active Sites [My Copy] IEEE/ACM Trans. Comput. Biol. Bioinformatics, Vol. 4, No. 2. (April 2007), pp. 310-320. by Nils Weskamp, Eyke Hullermeier, Daniel Kuhn, Gerhard Klebe posted to bio graph_alignment by lfriedl on 2007-06-29 21:38:32 as along with 1 group kdl
	Inferring network mechanisms: the Drosophila melanogaster protein interaction network. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 9. (1 March 2005), pp. 3192-3197. by M. Middendorf, E. Ziv, C. H. Wiggins posted to graph_based_analysis ppi by lfriedl on 2006-06-29 22:35:46 as along with 3 people and 1 group wnpx jaspervoskuilen iris_2001 kdl
	Discovering molecular pathways from protein interaction and gene expression data [My Copy] Bioinformatics, Vol. 19, No. suppl_1. (3 July 2003), pp. i264-272. by E. Segal, H. Wang, D. Koller posted to bio by lfriedl on 2006-05-01 19:31:07 as along with 7 people and 1 group yaredo jfr wnpx noano bhaddow edwardmorrissey jiny kdl
	A Probabilistic Functional Network of Yeast Genes [My Copy] Science, Vol. 306, No. 5701. (26 November 2004), pp. 1555-1558. by Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward M. Marcotte posted to bio predict_function by lfriedl on 2006-04-09 03:33:59 as along with 20 people and 3 groups snow_dragon freesci isotelesis eesruiz aelef jiny irenas ccots balajis nuke2005 eweaver opheliav nickluscombe reidy dbgrant kintoki balicea svdate ellakat roys dbk-lab kdl EBI-regulation
	Scale-free networks in cell biology [My Copy] J Cell Sci, Vol. 118, No. 21. (1 November 2005), pp. 4947-4957. by Reka Albert posted to bio graph_based_analysis review social_network_analysis by lfriedl on 2006-04-09 03:31:24 as along with 9 people and 1 group abhishek_tiwari kinop diamantis daforerog mtagaya guhjy wnpx mmt maralena kdl
	Genome-scale protein function prediction in yeast Saccharomyces cerevisiae through integrating multiple sources of high-throughput data. [My Copy] Pac Symp Biocomput (2005), pp. 471-482. by Y. Chen, D. Xu posted to bio multiple_data_sources predict_function by lfriedl on 2005-09-29 20:24:41 as along with 5 people and 2 groups tmmurali okarsligil balajis wnpx carlk kdl Bioinformatics
	Computational methods of analysis of protein-protein interactions. [My Copy] Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 377-382. by L. Salwinski, D. Eisenberg posted to bio multiple_data_sources predict_function review by lfriedl on 2005-09-27 19:05:50 as along with 2 people and 2 groups okarsligil bicko kdl Bioinformatics
	Integrating high-throughput and computational data elucidates bacterial networks. [My Copy] Nature, Vol. 429, No. 6987. (6 May 2004), pp. 92-96. by M. W. Covert, E. M. Knight, J. L. Reed, M. J. Herrgard, B. O. Palsson posted to bio high_throughput_dataset reconstruct_pathway by lfriedl on 2005-09-17 00:20:27 as along with 6 people and 2 groups Retchless RMGraze alexg raiyar JeremyZucker srp33 kdl steinmetzlab
	Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 9. (2 March 2004), pp. 2981-2986. by Amos Tanay, Roded Sharan, Martin Kupiec, Ron Shamir posted to bio graph_based_analysis multiple_data_sources predict_function by lfriedl on 2005-08-24 21:02:14 as along with 8 people and 1 group meanerelk roys snuppepuppan dragonrez balajis natstreet ellakat carlk kdl

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