liblab's library 49 articles Export

	Functional interaction of beta-catenin with the transcription factor LEF-1. [My Copy] Nature, Vol. 382, No. 6592. (15 August 1996), pp. 638-642. by J. Behrens, J. P. von Kries, M. Kühl, et al.L. Bruhn, D. Wedlich, R. Grosschedl, W. Birchmeier posted to mdc by liblab on 2009-10-26 10:35:12 as
	Fast Gene Ontology based clustering for microarray experiments [My Copy] BioData Mining, Vol. 1, No. 1. (21 November 2008), 11. by Kristian Ovaska, Marko Laakso, Sampsa Hautaniemi posted to geneontology clustering by liblab on 2009-10-14 08:36:43 as along with 5 people and 1 group jfr guhjy renatomilani michaelbarton Terkko BergmanLab
	Spatially Uniform ReliefF (SURF) for computationally-efficient filtering of gene-gene interactions [My Copy] BioData Mining, Vol. 2, No. 1. (2009), 5. by Casey Greene, Nadia Penrod, Jeff Kiralis, Jason Moore posted to textmining ppi literaturemining gene-gene by liblab on 2009-10-14 08:34:46 as
	Construction of a cancer-perturbed protein-protein interaction network for discovery of apoptosis drug targets. [My Copy] BMC systems biology, Vol. 2, No. 1. (2008) by L. H. Chu, B. S. Chen posted to ppi by liblab on 2009-07-03 14:44:56 as along with 4 people jfr reyez renatomilani guhjy
	Databases of protein-protein interactions and their use in drug discovery. [My Copy] Current opinion in drug discovery & development, Vol. 12, No. 3. (May 2009), pp. 358-366. by G. Fuentes, J. Oyarzabal, A. M. Rojas posted to ppi by liblab on 2009-07-03 14:43:21 as along with 1 person higueruelo
	Mining and visualizing the chemical content of large databases. [My Copy] Current opinion in drug discovery & development, Vol. 12, No. 3. (May 2009), pp. 367-375. by H. O. Villar, M. R. Hansen posted to textmining by liblab on 2009-07-03 14:38:15 as along with 1 person abhishek_tiwari
	@Note: A workbench for Biomedical Text Mining [My Copy] Journal of Biomedical Informatics, Vol. 42, No. 4. (22 August 2009), pp. 710-720. by Anália Lourenço, Rafael Carreira, Sónia Carneiro, et al.Paulo Maia, Daniel Glez-Peña, Florentino Fdez-Riverola, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha posted to textmining by liblab on 2009-07-03 14:37:01 as along with 6 people and 1 group kshameer zimbo1 henk-cul guhjy dullhunk reyez dbmi-nlp
	Mining chemical and biological information from the drug literature. [My Copy] Current opinion in drug discovery & development, Vol. 12, No. 3. (May 2009), pp. 376-387. by D. L. Banville posted to textmining by liblab on 2009-07-03 14:36:46 as along with 1 person abhishek_tiwari
	Improving classification in protein structure databases using text mining. [My Copy] BMC bioinformatics, Vol. 10 (05 May 2009), 129. by A. Koussounadis, O. C. Redfern, D. T. Jones posted to textmining by liblab on 2009-07-03 14:36:19 as along with 3 people henk-cul reyez idoerg
	Systematic investigation of time windows for adverse event data mining for recently approved drugs. [My Copy] Journal of clinical pharmacology, Vol. 49, No. 6. (June 2009), pp. 626-633. by A. M. Hochberg, M. Hauben, R. K. Pearson, D. J. O'Hara, S. J. Reisinger posted to textmining by liblab on 2009-07-03 14:35:39 as
	Predicting the graft survival for heart-lung transplantation patients: An integrated data mining methodology. [My Copy] International journal of medical informatics (2 June 2009) by Asil Oztekin, Dursun Delen, Zhenyu James J. Kong posted to textmining by liblab on 2009-07-03 14:35:01 as
	Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 177. by Sam Zaremba, Mila R. Santacruz, Thomas Hampton, et al.Panna Shetty, Joel Fedorko, Jon Whitmore, John Greene, Nicole Perna, Jeremy Glasner, Guy Plunkett, Matthew Shaker, David Pot posted to textmining by liblab on 2009-07-03 14:33:24 as along with 10 people and 2 groups zufar druvus behindtherabbit fgibson Effie kiekyon leemond31 nuin barriot Gaetan NaCTeM Journal picks
	LitInspector: literature and signal transduction pathway mining in PubMed abstracts. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), gkp303. by M. Frisch, B. Klocke, M. Haltmeier, K. Frech posted to literaturemining textmining by liblab on 2009-07-03 14:32:19 as along with 3 people guhjy daforerog renatomilani
	MedlineRanker: flexible ranking of biomedical literature [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W141-146. by Jean-Fred Fontaine, Adriano Barbosa-Silva, Martin Schaefer, Matthew R. Huska, Enrique M. Muro, Miguel A. Andrade-Navarro posted to retrieval by liblab on 2009-07-03 14:31:03 as along with 4 people jlike daforerog giorgiobertin guhjy
	PLAN2L: a web tool for integrated text mining and literature-based bioentity relation extraction. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009) by M. Krallinger, C. Rodriguez-Penagos, A. Tendulkar, A. Valencia posted to textmining by liblab on 2009-07-03 14:28:06 as along with 2 people mitko guhjy
	Delayed impact: ISI's citation tracking choices are keeping scientists in the dark [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (12 July 2004), 93. by Matthew Cockerill posted to citation isi by liblab on 2009-07-03 14:24:21 as along with 4 people daforerog JoeDunckley dullhunk sci91078
	Mining literature for protein-protein interactions. [My Copy] Bioinformatics (Oxford, England), Vol. 17, No. 4. (1 April 2001), pp. 359-363. by E. M. Marcotte, I. Xenarios, D. Eisenberg posted to literaturemining ppi textmining by liblab on 2009-07-03 14:14:30 as along with 4 people daforerog msampson blackbart cjeans
	Evaluating contributions of natural language parsers to protein-protein interaction extraction [My Copy] Bioinformatics, Vol. 25, No. 3. (1 February 2009), pp. 394-400. by Yusuke Miyao, Kenji Sagae, Rune Sætre, Takuya Matsuzaki, Jun'ichi Tsujii posted to ppi textmining by liblab on 2009-05-11 15:14:46 as along with 6 people and 2 groups RNawaz Effie mstumpf behindtherabbit grahamc henk-cul NaCTeM dbmi-nlp
	SciMiner: web-based literature mining tool for target identification and functional enrichment analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 838-840. by Junguk Hur, Adam D. Schuyler, David J. States, Eva L. Feldman posted to literaturemining textmining by liblab on 2009-05-11 15:11:44 as along with 9 people and 1 group jfr Scis0000002 reyez guhjy idonaldson pick600 mchelen zimbo1 dullhunk NaCTeM
	Collaborative text-annotation resource for disease-centered relation extraction from biomedical text. [My Copy] Journal of biomedical informatics (14 February 2009) by C Cano, T Monaghan, A Blanco, D P P. Wall, L Peshkin posted to textmining by liblab on 2009-05-11 15:11:17 as along with 2 people guhjy zimbo1
	Text mining in healthcare. Applications and opportunities. [My Copy] Journal of healthcare information management : JHIM, Vol. 22, No. 3. (2008), pp. 52-56. by U. Raja, T. Mitchell, T. Day, J. M. Hardin posted to textmining by liblab on 2009-05-11 15:10:27 as along with 2 people and 2 groups Effie henk-cul NaCTeM dbmi-nlp
	Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text. [My Copy] BMC bioinformatics, Vol. 10 Suppl 2 (2009) by Yael Garten, Russ B. Altman posted to textmining by liblab on 2009-05-11 15:06:38 as along with 6 people and 1 group mitko fisherp dullhunk Effie zimbo1 guhjy NaCTeM
	Do you do text? [My Copy] Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4199-4200. by Christian Blaschke, Alexander Yeh, Evelyn Camon, et al.Marc Colosimo, Rolf Apweiler, Lynette Hirschman, Alfonso Valencia posted to textmining by liblab on 2009-05-11 15:04:51 as
	Extracting human protein interactions from MEDLINE using a full-sentence parser. [My Copy] Bioinformatics, Vol. 20, No. 5. (22 March 2004), pp. 604-611. by N. Daraselia, A. Yuryev, S. Egorov, S. Novichkova, A. Nikitin, I. Mazo posted to ppi textmining by liblab on 2009-05-11 14:58:47 as along with 8 people and 2 groups henk-cul bqchinh irenas Enro miguel natsu zlu satre dbmi-nlp dbk-lab
	Critical assessment of information extraction systems in biology. [My Copy] Comparative and functional genomics, Vol. 4, No. 6. (2003), pp. 674-677. by C. Blaschke, L. Hirschman, A. Yeh, A. Valencia posted to ppi textmining by liblab on 2009-05-11 14:55:35 as
	Automatic Extraction of Biological Information From Scientific Text: Protein-Protein Interactions [My Copy] (1999) by Christian Blaschke, Miguel A. Andrade, Christos Ouzounis, Alfonso Valencia posted to ppi by liblab on 2009-05-11 14:53:42 as
	Discovering patterns to extract protein-protein interactions from full texts [My Copy] Bioinformatics, Vol. 20, No. 18., 3604. by Minlie Huang, Xiaoyan Zhu, Yu Hao, Donald G. Payan, Kunbin Qu, Ming Li posted to ppi textmining by liblab on 2009-05-11 14:50:40 as along with 1 person zlu
	Mining protein–protein interaction information on the internet [My Copy] Expert Systems with Applications, Vol. 30, No. 1. (January 2006), pp. 142-148. by H. Lee, S. Huang, E. Li posted to ppi by liblab on 2009-05-11 14:48:23 as
	Extracting interactions between proteins from the literature. [My Copy] Journal of biomedical informatics, Vol. 41, No. 2. (15 April 2008), pp. 393-407. by D. Zhou, Y. He posted to ppi textmining by liblab on 2009-05-11 14:47:02 as along with 5 people and 1 group robert85 svozil satre gmonce guhjy Bioinformatics
	Automatic classification of protein functions from the literature. [My Copy] Comparative and functional genomics, Vol. 4, No. 1. (2003), pp. 75-79. by C. Blaschke, A. Valencia posted to textmining by liblab on 2009-05-11 14:43:19 as
	Extracting information automatically from biological literature [My Copy] Comparative and Functional Genomics, Vol. 2, No. 5. (October 2001), pp. 310-313. by C. Blaschke, R. Hoffmann, Carlos, Valencia posted to textmining by liblab on 2009-05-11 14:38:04 as along with 1 person and 1 group yas T_lab
	Text mining for biology - the way forward: opinions from leading scientists [My Copy] Genome Biology, Vol. 9, No. Suppl 2. (2008), S7. by Russ Altman, Casey Bergman, Judith Blake, et al.Christian Blaschke, Aaron Cohen, Frank Gannon, Les Grivell, Udo Hahn, William Hersh, Lynette Hirschman, Lars Jensen, Martin Krallinger, Barend Mons, Sean O'Donoghue, Manuel Peitsch, Dietrich R. Schuhmann, Hagit Shatkay, Alfonso Valencia posted to textmining by liblab on 2009-05-11 14:36:59 as along with 13 people and 1 group lmichan artaban421 abhishek_tiwari daforerog kiekyon henk-cul fisherp hpiwowar guhjy barriot imrchen fgibson dullhunk dbmi-nlp
	Creating reference datasets for systems biology applications using text mining. [My Copy] Annals of the New York Academy of Sciences, Vol. 1158, No. 1. (March 2009), pp. 14-28. by Martin Krallinger, Ana Maria M. Rojas, Alfonso Valencia posted to textmining by liblab on 2009-05-11 14:32:47 as along with 3 people and 1 group lmichan zimbo1 henk-cul dbmi-nlp
	Automatic document classification of biological literature. [My Copy] BMC bioinformatics, Vol. 7, No. 1. (07 August 2006), 370. by David Chen, Hans-Michael M. Müller, Paul W. Sternberg posted to textmining by liblab on 2009-05-11 14:16:42 as along with 7 people and 3 groups druvus thegoose2 tharris irenas Enro yas ananthrk C. elegans / WormBase dbk-lab T_lab
	Textpresso: an ontology-based information retrieval and extraction system for biological literature. [My Copy] PLoS biology, Vol. 2, No. 11. (November 2004) by Hans-Michael M. Müller, Eimear E. Kenny, Paul W. Sternberg posted to textmining by liblab on 2009-05-11 14:15:10 as along with 16 people and 4 groups artaban421 mitko thegoose2 tharris irenas Enro guhjy yas dullhunk hpiwowar fisherp zlu daniel_schober diogomartins mroos vlachmore C. elegans / WormBase dbk-lab T_lab AID
	Text mining and ontologies in biomedicine: Making sense of raw text [My Copy] Brief Bioinform, Vol. 6, No. 3. (1 January 2005), pp. 239-251. by Irena Spasic, Sophia Ananiadou, John McNaught, Anand Kumar posted to textmining by liblab on 2009-05-11 14:13:47 as along with 17 people and 5 groups lmichan tsunol artaban421 daforerog svozil arafalov henk-cul farzanehs lauras irenas andytseng yas hpiwowar helliontroy johnkork daniel_schober yggdrasil Bioinformatics NLP dbk-lab T_lab biomedical-nlp
	New directions in biomedical text annotation: definitions, guidelines and corpus construction [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (25 July 2006), 356. by W. John Wilbur, Andrey Rzhetsky, Hagit Shatkay posted to textmining by liblab on 2009-05-11 14:11:24 as along with 8 people and 2 groups artaban421 lmichan henk-cul fisherp helliontroy jacky957 balex wchapman biomedical-nlp dbmi-nlp
	Linking genes to literature: text mining, information extraction, and retrieval applications for biology [My Copy] Genome Biology, Vol. 9, No. Suppl 2. (2008), S8. by Martin Krallinger, Alfonso Valencia, Lynette Hirschman posted to ppi textmining by liblab on 2009-05-11 14:10:34 as along with 13 people and 1 group artaban421 druvus satre daforerog mitko lmichan aberamanda henk-cul Alois guhjy dullhunk bouncingbudha goettl dbmi-nlp
	MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data. [My Copy] Genome biology, Vol. 9 Suppl 2 (2008) by A. Chatr-aryamontri, S. Kerrien, J. Khadake, et al.S. Orchard, A. Ceol, L. Licata, L. Castagnoli, S. Costa, C. Derow, R. Huntley, B. Aranda, C. Leroy, D. Thorneycroft, R. Apweiler, G. Cesareni, H. Hermjakob posted to ppi by liblab on 2009-05-11 14:09:09 as
	Concept mining for indexing medical literature [My Copy] Engineering Applications of Artificial Intelligence, Vol. 19, No. 4. (June 2006), pp. 411-417. by I. Bichindaritz, S. Akkineni posted to conceptmining textmining by liblab on 2009-05-11 14:07:13 as
	Text-mining approaches in molecular biology and biomedicine. [My Copy] Drug Discov Today, Vol. 10, No. 6. (15 March 2005), pp. 439-445. by M. Krallinger, R. A. Erhardt, A. Valencia posted to textmining by liblab on 2009-05-11 14:06:31 as along with 8 people and 1 group eesruiz lmichan henk-cul irenas kuhn textoris josepe kallberg dbk-lab
	Getting to the (c)ore of knowledge: mining biomedical literature [My Copy] International Journal of Medical Informatics, Vol. 67, No. 1-3. (04 December 2002), pp. 7-18. by Berry de Bruijn, Joel Martin posted to literaturemining textmining by liblab on 2009-05-11 14:06:06 as along with 1 person devakiram
	Text Mining [My Copy] (2006), pp. 621-624. by W. Black posted to textmining by liblab on 2009-05-11 14:04:29 as
	Text mining and its potential applications in systems biology. [My Copy] Trends Biotechnol (11 October 2006) by Sophia Ananiadou, Douglas B B. Kell, Jun-Ichi I. Tsujii posted to textmining by liblab on 2009-05-11 14:03:36 as along with 17 people and 3 groups artaban421 eesruiz henk-cul guhjy irenas jfr yas dullhunk fisherp jacky957 daniel_schober dejori pablomendes pmendes TheresaNiederberger alanrw satre ImagCom - Biomedical Text Computing dbk-lab T_lab
	Status of text-mining techniques applied to biomedical text [My Copy] Drug Discovery Today, Vol. 11, No. 7-8. (April 2006), pp. 315-325. by R. Erhardt, R. Schneider, C. Blaschke posted to textmining by liblab on 2009-05-11 14:02:58 as along with 18 people and 2 groups holopoj mitko fisherp svozil Zephyrus ogenex lesikv henk-cul bqchinh Enro guhjy hpiwowar ibuch mroos TheresaNiederberger akastrin aliekens irenas Bioinformatics AID
	A text-mining perspective on the requirements for electronically annotated abstracts [My Copy] FEBS Letters, Vol. 582, No. 8. (09 April 2008), pp. 1178-1181. by F. Leitner, A. Valencia posted to ppi textmining by liblab on 2009-05-11 13:55:31 as along with 5 people henk-cul dullhunk satre ianturton guhjy
	PPI Finder: A Mining Tool for Human Protein-Protein Interactions [My Copy] PLoS ONE, Vol. 4, No. 2. (23 February 2009), e4554. by Min He, Yi Wang, Wei Li posted to ppi by liblab on 2009-05-11 13:52:57 as along with 5 people daforerog fgibson guhjy sjcockell zwang
	Mining protein-protein interaction networks: denoising effects [My Copy] Journal of Statistical Mechanics: Theory and Experiment, Vol. 2009, No. 01. (2009), P01006. by Elisabetta Marras, Enrico Capobianco posted to ppi by liblab on 2009-05-11 13:48:49 as
	Bayesian inference of protein-protein interactions from biological literature [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1536-1542. by Rajesh Chowdhary, Jinfeng Zhang, Jun S. Liu posted to ppi by liblab on 2009-05-11 13:44:23 as along with 4 people yaredo sameersoi mstumpf sjcockell