lillekatt's library 190 articles Export

	Reversible temperature and pressure denaturation of a protein fragment: a replica exchange molecular dynamics simulation study. [My Copy] Phys Rev Lett, Vol. 93, No. 23. (3 December 2004) by D. Paschek, A. E. García posted to replica_exchange by lillekatt on 2007-11-25 12:26:46 as
	A discrete element 3' of human immunodeficiency virus 1 (HIV-1) and HIV-2 mRNA initiation sites mediates transcriptional activation by an HIV trans activator. [My Copy] Mol Cell Biol, Vol. 8, No. 6. (June 1988), pp. 2555-2561. by A. Jakobovits, D. H. Smith, E. B. Jakobovits, D. J. Capon posted to hiv-1 hiv-2 tar-tat by lillekatt on 2007-11-25 12:24:17 as
	Generalized-ensemble algorithms: enhanced sampling techniques for Monte Carlo and molecular dynamics simulations [My Copy] Journal of Molecular Graphics and Modelling In Conformational Sampling, Vol. 22, No. 5. (May 2004), pp. 425-439. by Yuko Okamoto posted to md monte_carlo sampling by lillekatt on 2007-11-25 12:18:05 as along with 1 person Sylvain_Prigent
	A Novel CDK9-Associated C-Type Cyclin Interacts Directly with HIV-1 Tat and Mediates Its High-Affinity, Loop-Specific Binding to TAR RNA [My Copy] Cell, Vol. 92, No. 4. (20 February 1998), pp. 451-462. by Ping Wei, Mitchell E. Garber, Shi-Min Fang, Wolfgang H. Fischer, Katherine A. Jones posted to hiv-1 tar-tat tat by lillekatt on 2007-11-25 12:12:14 as
	TAK, an HIV Tat-associated kinase, is a member of the cyclin-dependent family of protein kinases and is induced by activation of peripheral blood lymphocytes and differentiation of promonocytic cell lines [My Copy] Proceedings of the National Academy of Sciences, Vol. 94, No. 23. (11 November 1997), pp. 12331-12336. by Xinzhen Yang, Moses O. Gold, Derek N. Tang, et al.Dorothy E. Lewis, Estuardo Aguilar-Cordova, Andrew P. Rice, Christine H. Herrmann posted to hiv-1_hiv-2 tak tat by lillekatt on 2007-11-25 12:08:47 as
	P-TEFb kinase is required for HIV Tat transcriptional activation in vivo and in vitro [My Copy] Genes Dev., Vol. 11, No. 20. (15 October 1997), pp. 2633-2644. by Helena S. Mancebo, Gary Lee, John Flygare, et al.Joanne Tomassini, Percy Luu, Yuerong Zhu, Junmin Peng, Carol Blau, Daria Hazuda, David Price, Osvaldo Flores posted to hiv-1 tat by lillekatt on 2007-11-25 11:49:57 as
	Transcription elongation factor P-TEFb is required for HIV-1 Tat transactivation in vitro [My Copy] Genes Dev., Vol. 11, No. 20. (15 October 1997), pp. 2622-2632. by Yuerong Zhu, Tsafrira Pe'ery, Junmin Peng, et al.Yegnanarayana Ramanathan, Nick Marshall, Tricia Marshall, Brad Amendt, Michael B. Mathews, David H. Price posted to hiv-1_hiv-2 tat by lillekatt on 2007-11-25 11:41:22 as
	HIV-1 tat trans-activation requires the loop sequence within tar [My Copy] Nature, Vol. 334, No. 6178. (14 July 1988), pp. 165-167. by Sandy Feng, Eric C. Holland posted to hiv-1 tar tar-tat tat by lillekatt on 2007-11-25 11:38:02 as
	Regulation of mRNA accumulation by a human immunodeficiency virus trans-activator protein. [My Copy] Cell, Vol. 48, No. 4. (27 February 1987), pp. 691-701. by M. A. Muesing, D. H. Smith, D. J. Capon posted to hiv-1 tat by lillekatt on 2007-11-25 11:01:32 as
	Molecular dynamics simulations and thermodynamics analysis of DNA-drug complexes. Minor groove binding between 4',6-diamidino-2-phenylindole and DNA duplexes in solution. [My Copy] J Am Chem Soc, Vol. 125, No. 7. (19 February 2003), pp. 1759-1769. by N. Spacková, T. E. Cheatham, F. Ryjácek, et al.F. Lankas, L. Van Meervelt, P. Hobza, J. Sponer posted to dna-protein md by lillekatt on 2007-11-25 10:47:02 as
	Structural insights into the effect of isonucleosides on B-DNA duplexes using molecular-dynamics simulations. [My Copy] J Mol Model, Vol. 12, No. 6. (September 2006), pp. 781-791. by H. Jin, S. Zheng, Z. Wang, et al.C. Luo, J. Shen, H. Jiang, L. Zhang, L. Zhang posted to dna md by lillekatt on 2007-11-25 10:44:29 as
	Stereochemistry and position-dependent effects of carcinogens on TATA/TBP binding. [My Copy] Biophys J, Vol. 90, No. 6. (15 March 2006), pp. 1865-1877. by Q. Zhang, T. Schlick posted to nucleic_acids tata_tbp by lillekatt on 2007-11-25 10:42:17 as
	Predictive modelling of topology and loop variations in dimeric DNA quadruplex structures. [My Copy] Nucleic Acids Res, Vol. 34, No. 7. (2006), pp. 2117-2127. by P. Hazel, G. N. Parkinson, S. Neidle posted to dna md modelling by lillekatt on 2007-11-25 10:39:49 as
	Molecular dynamic simulations of environment and sequence dependent DNA conformations: the development of the BMS nucleic acid force field and comparison with experimental results. [My Copy] J Biomol Struct Dyn, Vol. 16, No. 3. (December 1998), pp. 487-509. by D. R. Langley posted to force_field nucleic_acids by lillekatt on 2007-11-25 10:34:03 as
	Reduced surface: an efficient way to compute molecular surfaces. [My Copy] Biopolymers, Vol. 38, No. 3. (March 1996), pp. 305-320. by M. F. Sanner, A. J. Olson, J. C. Spehner posted to solvent_accessible_surface by lillekatt on 2007-11-25 10:17:10 as along with 4 people melo_mcr onufriev BragilMassoud sithmein
	Molecular dynamics with coupling to an external bath [My Copy] The Journal of Chemical Physics, Vol. 81, No. 8. (1984), pp. 3684-3690. by H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, A. Dinola, J. R. Haak posted to md temperature by lillekatt on 2007-11-25 09:39:22 as along with 12 people and 1 group georgwachter A_Coletta_Thesis rdf r2s2 dsmueller Lombardo_7 gsub allmensch jwagoner tji choonpeng jteyra Structural Biology Group TorVergata
	A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat. [My Copy] J Biomol Struct Dyn, Vol. 16, No. 4. (February 1999), pp. 845-862. by T. E. Cheatham, P. Cieplak, P. A. Kollman posted to amber force_field by lillekatt on 2007-11-25 09:36:36 as along with 2 people ffranca gruppo
	A smooth particle mesh Ewald method [My Copy] The Journal of Chemical Physics, Vol. 103, No. 19. (1995), pp. 8577-8593. by Ulrich Essmann, Lalith Perera, Max L. Berkowitz, Tom Darden, Hsing Lee, Lee G. Pedersen posted to md pme by lillekatt on 2007-11-25 08:19:26 as along with 15 people and 2 groups jmparks rpetrenko A_Coletta_Thesis r2s2 charris5 pavanghatty sobolevnrm choonpeng and_ped10 easybakemuffin RamuAnandakrishnan ashaytan mikaellund 6rheology jteyra Structural Biology Group TorVergata baker-group
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted to pdb by lillekatt on 2007-11-24 12:52:16 as along with 45 people and 5 groups trishul krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics LamBras RamuAnandakrishnan nlapalu reyez nigham thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac tji higueruelo boris_aguilar sebk timg References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp beta
	Structure of TAR RNA Complexed with a Tat-TAR Interaction Nanomolar Inhibitor that Was Identified by Computational Screening [My Copy] Chemistry & Biology, Vol. 9, No. 6. (June 2002), pp. 707-712. by Zhihua Du, Kenneth E. Lind, Thomas L. James posted to 1lvj tar-acetylpromazine by lillekatt on 2007-11-24 12:44:54 as
	Fast, efficient generation of high-quality atomic charges. AM1-BCC model: II. Parameterization and validation. [My Copy] J Comput Chem, Vol. 23, No. 16. (December 2002), pp. 1623-1641. by A. Jakalian, D. B. Jack, C. I. Bayly posted to amber atomic_charges force_field by lillekatt on 2007-11-24 12:38:20 as along with 3 people and 1 group superpyrin patricia sobolevnrm baker-group
	The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein. [My Copy] J Mol Biol, Vol. 253, No. 2. (20 October 1995), pp. 313-332. by F. Aboul-ela, J. Karn, G. Varani posted to 1arj tar-argininamide tar-arginine by lillekatt on 2007-11-24 12:09:58 as along with 1 person P2324548
	Thermodynamic analysis of transfer RNA unfolding [My Copy] Journal of Molecular Biology, Vol. 122, No. 4. (15 July 1978), pp. 447-464. by P. L. Privalov, V. V. Filimonov posted to trna thermodynamics by lillekatt on 2007-02-07 14:23:41 as
	Biophysical studies of a ruthenium(II) polypyridyl complex binding to DNA and RNA prove that nucleic acid structure has significant effects on binding behaviors [My Copy] Journal of Biological Inorganic Chemistry, Vol. V10, No. 5. (2005), pp. 529-538. by Hong Xu, Yi Liang, Peng Zhang, et al.Fen Du, Bing-Rui Zhou, Jun Wu, Jian-Hong Liu, Zhi-Gang Liu, Liang-Nian Ji posted to thermodynamics rna itc binding by lillekatt on 2007-02-07 14:02:23 as
	DNA Polymorphism: A Comparison of Force Fields for Nucleic Acids [My Copy] Biophysical Journal, Vol. 84, No. 3. (March 2003), pp. 1421-1449. by Swarnalatha Y. Reddy, Fabrice Leclerc, Martin Karplus posted to force_field by lillekatt on 2006-09-04 14:33:14 as
	Prediction of RNA secondary structure by free energy minimization [My Copy] Current Opinion in Structural Biology, Vol. 16, No. 3. (June 2006), pp. 270-278. by David H. Mathews, Douglas H. Turner posted to rna structure-prediction by lillekatt on 2006-08-18 11:57:36 as
	Aminoglycoside binding in the major groove of duplex rna: the thermodynamic and electrostatic forces that govern recognition [My Copy] Journal of Molecular Biology, Vol. 298 (2000), pp. 95-110. by Emily Jin, Vsevolod Katritch, Wilma Olson, Malkhaz Kharatisvili, Ruben Abagyan, Daniel Pilch posted to rna-antibiotics rna-ligands tar-ligands by lillekatt on 2006-08-08 11:18:41 as
	Estimating entropies from molecular dynamics simulations [My Copy] Journal of Chemical Physics, Vol. 120, No. 6. (8 February 2004), pp. 2652-2661. by Christine Peter, Chris Oostenbrink, Arthur van Dorp, Wilfred van Gunsteren posted to entropy md by lillekatt on 2006-06-19 13:40:12 as
	Entropy in protein folding and in protein—protein interactions [My Copy] Current Opinion in Structural Biology, Vol. 7, No. 2. (1997), pp. 215-221. by Patrick G. Brady, Kim A. Sharp posted to entropy protein-folding protein-protein thermodynamics by lillekatt on 2006-06-14 17:30:14 as
	A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules [My Copy] J. Am. Chem. Soc., Vol. 117 (1995), pp. 5179-5197. by Wendy D. Cornell, Piotr Cieplak, Christopher I. Bayly, et al.Ian R. Gould, Kenneth M. Merz, David M. Ferguson, David C. Spellmeyer, Thomas Fox, James W. Caldwell, Peter A. Kollman posted to rna md force_field by lillekatt on 2006-05-30 16:08:29 as along with 944 people and 149 groups lauratest pkt thegoose berylschaefer Venu convulted nina4citeulike AJCann smccord chethrington NitinCR Compartia MariekeVanWamel cvq gurprit_raunu refkit fordela Thaverkamp kennedie yuichi1004 sheshebrown marinari eunsugee derchao yse guhjy alexloh80 Zaraitzu RMT Shindy Biomedyknight lesikv TomQ pyjamashark Becky_Shen RandolphCarter LaurieEMiller skolaric smogit apokgmc ldietz ibbuntu bleong mansaok nnikolaj jyew christianholz lottebelice m8eld1989 mchinen magalb Xountini gimpf watersiren cwtjoa agogoh3 samanthahut rsilveira79 andresmh kgutwin thyk mboehmer bernstei waghsk kimlab mlovelace BioNica diomede tulaydemir doncieux szielke daniel_pang paulducker thomast3 brothers hplatero suneilmohan bazza030 jjray jimjoe IulianGherghel pnauer jhibbits alexstorer chem-pion ImranRaoufMalik lisa1 Evangelia jorgen 100155430 z3phyr micha137 uperinetti jsenn antistarlet Alemohammad DonIvanCorleone Calder viveknallur emiliorp kdouglass hotnuts embersp frdr nlafferty pkm lupianiedu APSLuppa raik MarcJungbluth tyrell_turing bertrandservin cswinburne amarois JSicot diamantis reyez guano lizbiogen xistenshal hdopazo christian_librarian sharonazzopardi kozima lionicebear coco0214 ndegara hyhu84 erevans benmiller314 octobremtl kroatiker kightley torresan nkishan RalfMitschke Growlingfish georgenichols eddymier enricaki udivi sjgaller arnavjhala gferencz sgroenewegen asalvadori hideojoho ChristianRauh richpb7 JonathanD bsuter nshephard axin mount_misery isp tfogal pwais splzdnkl jszekely rodney baaklini lynnefox tertel raposoc swatipendyala kentz hdz majdula dabilock Ubiquitousuk ChaTo karin ivanshi tyvokka tnhh turadg scalptob Torsten_Holmer Rootsister frauta jspeer jmetz ejmeij pblanchenay dhbradshaw ecome soeleadership mederly JLMC sbutterfill rsimitev theshadowhost standara chiayung stajich sannama softsimu vlado CameronNeylon emmackinnon fbr susz mazsx cveres johnabender HugoMarcelo dlobo fernand0 dperkel egh samth sora florine ladygoat hopm hellige parmentierf ssn mortimer tinkha V plaugg ansobol mjaz berthelemy eldan pdlug zephoria carloscabanillas Janos bkliethermes nazareno elsantosneto januadiaboli yaroslavvb jurijmlotman geomblog srl bigga treycausey CSG mcphee chandrashekar denns matzke sherrivokey sona cassj lijil hlovise coolger bigmagpie alicetiara yorgos johannsen cavlec smbrower viller jenmy mlzafron tymmail mtruksa pauldobson qbin1304 fluffels loison CVLab BiebmiepLeen marcusbm dumpa afrojapchick asmusolsen jjrodriguez UFGeog mitchee3 rodrigobotelho nealpfox gofsu0 pmaire soloaries HrRossi nschwart derkaiser athma alexbdigital amaitos ejones caitlinshanley lunarmono jblosnich willfox sedging davidr macowell eimaj42jdp Flit BenWillems agallet hawesie sngourlay jolilius rmagf acer ville garyfeng danifazzio willwade gantlord melanieramage mgregg cwb neteler carneym crispinb rdlong davemack agarza carsonr imcdnzl tjimenez Tolik lna dmikurube szityu michmill P2324548 jpbenda Vaccine tadm mkwalker anar grzegorz japple planetoid okarsligil stormybriggs UWerplab nbr inbetweener pafmon stina pgastrein xiruela kutabar jfr xamde kliether mleis jshahin cmunson lfriedl sharonhoward ccots terraces czlamer brent_lance subhradeep Jellyfish cmmorel bayesian benavides ghsalazar manuelpq sekulerlab jmaryott kristina chad_davis Ayest thens RMGraze e2holmes JAShapiro contradictoryben lrodero jamesfournie nybon hawkestein diegolino_veneziano rvosa Schmidtc lyongu ricmilne KarinaFigueroa jfmenudet cdmilligan great_apes brthz juliajumeau gloinf billwolff mrkrause halsnalle pintman yish mkcerusky cyph3r idm smithco ruudvanleeuwen BarrosH aelva harshpshah earnoux princessbritty Laki kupopo ryang eustatic daqing stain matts ram frankgrimes Pfaff9 locatellimp seawidget ianli kate_waxlyrical rherring ThomasEtEckert cliona shaun gregnishihara harmonjt Happybene jklugman mwyarbro rburnett prabakaran nperrin tystl gugek NicolasNeubauer gytisc Nele pedagogicapprentice dlouzeck phillipkent emerson rafamayo arichar6 pasion sadsackmac gbae redcourgette sunilbajpai JJNonesuch heintz BuckeyePhysicist bretblosser charlesijones term madhadron ypeter cmm agraham yijisoo jberro peaksun balabu djsaab crumj garypearce rinelk plashkes PaulB charlescearl p2p-sec langec tuaba os252 JonathanFeinberg jingliu dvoigt hywel tshr dgront isorhiza foistudy jenine donade kmcolo fisherp voiklis insilico fitzgeraldsteele junoda sumeetonweb familydoc craigtalbert dmitri83 dmboyer martint RalphPutnam atsu-kan hlwoodcock reta gogabr smmurphy rafabravo dabhishe JennaW hisashim cjones chuggins ptrobajo tenalka stringertheory muli Sulpicus ranb alikocho hiromark gane5h l-alex rdiaz pilho ueberweise wangsd echinotrix ak Odi bezbozhnik todchambers perceptron wasteland93 yizheng stephane-jean mahlow mbaric mtr anon_pl dir289 lanubile fcalefato dpeeler QFRMC xwenlong johncumbers kgronemyer keitokita hkl pervane mpennell kedmond mfisk brusilovsky gregflanders hgamboa pgeymueller last5laps jbrown nathanielvirgo rwm101 ChristianGraf marohn davetown101 barbz79it naturecure edgarbc muellerkind fugitive joshuashen aviad_work crusher lucbelanger lauragonzalez Manhal gagliol ashandanj lns cblock trungdong lechristophe ealloza s-adachi rsabouni dhingra corcoted Shii vrv fmiyamae livingthingdan kaz229 Haggan knowlengr aniak krzywy tg Rootfruit ricklillie gracev lrsantos babyone eenauk long pereicoco yeqiwei amcmorl redelings nojhan mkharito rocarvaj stoev tdpessem briansludwig ttsutsumi wenniehu elsiatcase perhapstoopink atbrew fsteeg digitaldust CDivin whshen andersok fpalm brembs ragha mgran thomaswuebben justaubrey macfreek lilalia azygmunt ddineen miguelbezerra jdiggans huminfly thjt shenshei erikwdavis jsvoboda ceegrs2 jared jijkoun slafont mdifranc GregorSuhr jmurdoch mattlee jvrantwijk ible fruminator mkowa fellow tzmtzm samjlord abbyworld aozkan giorgis fluomouse Tellima RiccardoAlbertoni annmarie37 ciriol sstoerge gengh goingsomewhere ruddyconsult MichaelGaebler nco71 Vezhnick fabianhemmert shangnan Fahland lossius adriancooke baikanamako elisaformist jsanpedro oceanflynn imaginaryunit bobturner grahamc nascardaughter shariffdinah ibschwartz srfairclough joepickrell bouchard islandrru hohkhkh1 alchemyst mlewcio irwink henriksdal cychang padraic trshepherd tarjeiha josemblazquez pitzelberger hukkinen toppi sjc garancher_gougeon_reyotero nmaisonneuve powell digamberjuwekar cmcleod grieth isys1186 aartaki polyparadigm portalqm bangb cdm jeanfou CareyNadell teh zwang shivakmr prerona michaelmampaey mick39 dagmar bellia kevin7 friveroll zetetic karipuf leechuck hp2oo1 jenda_z ngrandy andreacapocci ghunter Maderlock shizhao dayadvham monientiedt rebeccamancy calamar c-gobert baniel jborn dmschneid tale chrisatcite mloewer hanxiansheng rlai jasonbobe ggorjan zeppe AlisonBabeu eprzekwa J_Raff fornstar Akimasa technical oilpalm spacely j0nes TCgroup ingedwar Oktoplus stonest cwr jladell rbmoura Leize adjih carpi omidf2 msampson olaf markusd paulschlesinger qwermish librain pkrrules thehajime PeterRabbit paulvb peefeeyatko kinestetika lynleypage truongducthang metaspencer dodger042 jpassoth krokicki tibbitts brianlimyl vogmae doylem wongmld hayko gjhuang ashko buggle bemike cvarnam jakobl umurthy21 Katje tgyork ivanois toivotuo jnz snyder84 idonaldson dandaman awc mtugrul buchgeher fairy mebiel lectorespa bennettn waszak forestier claudiotubertini acastaner hkreysa AnneB GimpyBee sgclendenon paj prdrieze cortex rschulz aklassen kenneth1ny nschaeff japarejo andreacastelletti schocol hillarpoldmaa kcrawlik ipora yavanna Grobi s-fujii kdesmond bjbecerra ziggy talkingpoints linxiang mllee monkare pantxorama petergun6666 iantunbridge farzanehs mpisarenco blackm0k bluecricket mrosenki BrianTomasik adamsi schulz iup massimocencini natasjadenouden nickpitman genericg dmmarinlo kericson makbot adenkabe ThomasKluge kndiaye duckysherwood scottkb freddan IanBrown squirmelia gkvas hrwiltse mfloris mamadoudiao LTrottier giolakat nikko sarahmccrum malkav30 psique Repton gvandyk1 pdessus joni2am taenneken vrich Neeperando ranger midshipman Corbasson murb carterb applebyb kaniko skumagai Stepstep abdulpur mirweis nlauzier Axis gi0rgi0ne danzinde christiankissig tbolt427 Scis0000002 balicea Langster jeanbean EsepBib pulsus-morbi ezaydens melody scarcelan ablam maburkitt fghjorth austin MariaChiaraP wartaalman dconnelly kungcc sbaete tanneama000 ricckli boellernadja nafets laurabailey iarmac alexispaz pathari steveut wolfe275 dcastro yori amydash rpbharti rwilliamson motchy songpku andrealira Zephyrus wilkinm pchia davidchavalarias 3D24 INC Groep Z2 UCD TACs Master VTI - veille intelligence economique Oxford Hooker Group Web2Learning Web2-0_Education Semantic Web and online learning Gender and ICT e-JC BioVT Security in SOA PIM Semantic Desktop enviro ed Med Anthro @ UF Interactive Archivist Mycology GEB Biocatalysis and Biotransformation UF Geography Department CGREL CMU-HCII NU-PRL UoY-CS-AIG Blog_and_Wiki_Research CompetitionLawAndPolicy Tectonics_and_geomorphology NeuronDynamics Context-driven-testers ReadingLab political_science_students kdl distance remote TUCS-ES_Lab Quantum_physics_Education WAND sims_phd_cohort_2005 ASR digital_youth Librarians biodiversity_conservation Global_biodiversity_model InformationRetrieval Wikipedia AssistiveTechnology Bioinformatics mathgamespatterns folksonomy Neuroscience VisionLab Personal-Information-Management CMS Stoc_Proc_Ecology_WG LanguageAndBrain BrainTheory dtl hdm id vds-arg ALF DPR EvolutionaryComputation STS infovis 2ndFloor fammed-publichealth AI eni Biofluid FAB-lab DSS NeuralNetworks mobilecomputing tmig_psycho RETA SITCRC CDG cliamte_change folk_epistemology instaar_graduate_students Projet_ENSIMAG climate_change BUiGEM social_navigation Macroelectronics ARC04 The_Truants QFRMC_ConsumerCredit Plant-Tissue-Simulation METRIK Metaheuristics Boydian_Society eLearning BioinfoCIPF Nutritional_Polymorphisms CaltechCMP SEGAL Optimization location SNE kickOffTUG-Robocup NanoMechanicsofMetals_MPIMF Georouting Child_Support Software-Architecture moernerlab ilps livingthing HUCO-627-W07 elearning_research PLE-TEL-project Femtochemistry_LMU ediadem ENSSIBVeille memoir ILK ColDyn ImatiGESemantic AGH-IISG PRC_SEA TCD-NDS102-Project Adaptive-Web Microbial-Ecology Flexible_ICT-supported_learning Social_Software_ws_07-08 DialogueResearchGroup AM-VideoGames-Gender dIEMoSIRIS microbiology_nijmegen Europe_GPE ZnO_project ADMiRes Health_Sciences_Librarians Desgin-by-Contract MITCCI Kopelman_Group DarkMarkGroup VivesMinions PostureMobility compneur Philosophy of physics PsychStatsBanter Social Informatics @ IU Patent_Reform Convention on Knowledge Commons feminist_technoscience Roswell Cancer Crosstalk Parsons MFA DT 2008 Thesis Research
	RNA as a Drug Target: The Case of Aminoglycosides [My Copy] ChemBioChem, Vol. 4 (2003), pp. 1018-1023. by Quentin Vicens, Eric Westhof posted to rna-antibiotics rna-ligands by lillekatt on 2006-05-02 07:39:34 as
	NMR-based characterization of phenothiazines as a RNA binding scaffold. [My Copy] J Am Chem Soc, Vol. 126, No. 13. (7 April 2004), pp. 4453-4460. by M. Mayer, T. L. James posted to affinities nmr tar-acetylpromazine by lillekatt on 2006-04-28 12:53:07 as
	Ligand-induced changes in 2-aminopurine fluorescence as a probe for small molecule binding to HIV-1 TAR RNA [My Copy] RNA, Vol. 10, No. 9. (September 2004), pp. 1459-1468. by Bradrick Td, Marino Jp posted to affinities fluorescence tar-argininamide tar-neomycin by lillekatt on 2006-04-28 12:30:56 as
	Virtual screening and fast automated docking methods. [My Copy] Drug Discov Today, Vol. 7, No. 1. (1 January 2002), pp. 64-70. by G. Schneider, H. J. Böhm posted to computer_based docking drug_design virtuell_screening by lillekatt on 2006-04-21 15:21:03 as along with 1 person massivemayhem
	Computer-based de novo design of drug-like molecules [My Copy] Nat Rev Drug Discov, Vol. 4, No. 8. (01 August 2005), pp. 649-663. by Gisbert Schneider, Uli Fechner posted to computer_based drug_design by lillekatt on 2006-04-21 15:07:00 as along with 3 people npt11tpn peprovy girschick
	Multiple Molecular Dynamics Simulations of the Anticodon Loop of tRNA in Aqueous Solution with Counterions [My Copy] Journal of the American Chemical Society, Vol. 117 (1995), pp. 6720-6726. by Pascal Auffinger, Shirley Louise-May, Eric Westhof posted to counterions md rna sampling by lillekatt on 2006-03-22 10:11:22 as
	Convergence of sampling in protein simulations. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 65, No. 3 Pt 1. (March 2002) by B. Hess posted to md protein-folding sampling by lillekatt on 2006-03-22 10:06:06 as along with 2 people baaden ltrabuco
	Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin. [My Copy] Protein science : a publication of the Protein Society, Vol. 7, No. 3. (March 1998), pp. 649-666. by L. S. Caves, J. D. Evanseck, M. Karplus posted to md protein-folding sampling by lillekatt on 2006-03-22 09:58:29 as along with 4 people sunnytov bmduggan allmensch toerst
	Molecular recognition of RNA by neomycin and a restricted neomycin derivative. [My Copy] Angew Chem Int Ed Engl, Vol. 44, No. 33. (19 August 2005), pp. 5329-5334. by F. Zhao, Q. Zhao, K. F. Blount, Q. Han, Y. Tor, T. Hermann posted to tar-neomycin by lillekatt on 2006-03-21 15:13:15 as
	Solution Structure of the HIV-2 TAR-Argininamide Complex [My Copy] Journal of Molecular Biology, Vol. 267 (1997), pp. 624-639. by Alexander S. Brodsky, James R. Williamson posted to hiv-2 tar-argininamide by lillekatt on 2006-03-21 15:02:55 as
	Specific binding of arginine to TAR RNA. [My Copy] Proceedings of the National Academy of Sciences, Vol. 89, No. 7. (1992), pp. 2723-2726. by J. Tao, A. D. Frankel posted to tar-arginine by lillekatt on 2006-03-21 14:56:51 as
	Role of RNA structure in arginine recognition of TAR RNA [My Copy] Proceedings of the National Academy of Sciences, Vol. 90 (1993), pp. 3680-3684. by Joseph D. Puglisi, Lily Chen, Alan D. Frankel, James R. Williamson posted to tar-arginine by lillekatt on 2006-03-21 14:47:24 as
	HIV-1 TAR RNA enhances the interaction between Tat and cyclin T1. [My Copy] J Biol Chem, Vol. 275, No. 44. (3 November 2000), pp. 34314-34319. by J. Zhang, N. Tamilarasu, S. Hwang, et al.M. E. Garber, I. Huq, K. A. Jones, T. M. Rana posted to tar-tat tat-cyclin1 by lillekatt on 2006-03-21 14:20:08 as
	Probing Tat peptide-TAR RNA interactions by psoralen photo-cross-linking. [My Copy] Biochemistry, Vol. 40, No. 21. (29 May 2001), pp. 6458-6464. by Z. Wang, K. Shah, T. M. Rana posted to tar-tat by lillekatt on 2006-03-21 14:16:11 as
	Optimal allocation of replicas in parallel tempering simulations [My Copy] The Journal of Chemical Physics, Vol. 122 (8 January 2005) by Nitin Rathore, Manan Chopra, Juan J. de Pablo posted to parallel_tempering replica_exchange sampling by lillekatt on 2006-03-21 13:28:57 as
	Particle mesh Ewald: An N+log(N) method for Ewald sums in large systems [My Copy] Journal of Chemical Physics, Vol. 98, No. 12. (15 June 1993), pp. 10089-10092. by Tom Darden, Darrin York, Lee Pedersen posted to md pme by lillekatt on 2006-03-21 13:16:27 as
	Atomic Radii for Continuum Elektrostatics Calculations on Nucleic Acids [My Copy] Journal of Physical Chemistry, Vol. 106 (2002), pp. 11026-11035. by Nilesh K. Banavali, Benoit Roux posted to atomic_radii continuum-solvent md by lillekatt on 2006-03-21 12:51:20 as
	The Flying Ice Cube: Velocity Rescaling in Molecular Dynamics Leads to Violation of Energy Equipartition [My Copy] Journal of Computational Chemistry, Vol. 19, No. 7. (1998), pp. 726-740. by Stephen C. Harvey, Robert K. Tan, Thomas E. Cheatham posted to artifacts flying_icecube md by lillekatt on 2006-03-21 11:31:36 as
	Computational Alanine Scanning To Probe Protein-Protein Interactions: A Novel Approach To Evaluate Binding Free Energies [My Copy] Journal of the American Chemical Society, Vol. 121, No. 36. (31 August 1999), pp. 8133-8143. by Irina Massova, Peter A. Kollman posted to alanine_scanning binding_free_energies interactions protein-protein thermodynamics by lillekatt on 2006-03-20 15:43:50 as
	Accurate Calculation of Hydration Free Energies Using Macroscopic Solvent Models [My Copy] Journal of Physical Chemistry, Vol. 98 (1994), pp. 1978-1988. by Doree Sitkoff, Kim A. Sharp, Barry Honig posted to parse_parameters solvent_accessible_surface thermodynamics by lillekatt on 2006-03-20 15:32:55 as

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md	41
thermodynamics	27
tar-tat	23
rna	18
counterions	14
amber	13
rna-ligands	12
sampling	11
tar-neomycin	11
tat	10
itc	9
hiv-1	8
ions	8
tar-arginine	8
force_field	7
mm-pbsa	7
replica_exchange	7
mymd	6
tar	6
tar-argininamide	6
pme	5
protein-folding	5
protein-ligand	5
tar-ligands	5
ms	4
nmr	4
tar-acetylpromazine	4
affinities	3
binding_free_energies	3
continuum-solvent	3
dna-protein	3
hiv-1_hiv-2	3
rna-antibiotics	3
binding	2
charges	2
computer_based	2
dna	2
drug_design	2
entropy	2
hiv-2	2
interactions	2
nucleic_acids	2
protein-protein	2
resp	2
solvent_accessible_surface	2
1arj	1
1lvj	1
alanine_scanning	1
arginine-fork	1
artifacts	1
atomic_charges	1
atomic_radii	1
biv	1
docking	1
drugscore	1
electrostatics	1
energy	1
epr	1
equine	1
fluorescence	1
flying_icecube	1
gaff	1
hammerhead	1
intermolecular-interactions	1
modelling	1
monte_carlo	1
noncovalent_interactions	1
parallel_tempering	1
parse_parameters	1
pdb	1
poisson-boltzmann	1
rna-dna	1
rnafree	1
structure-prediction	1
tak	1
tata_tbp	1
tat-cyclin1	1
temperature	1
trna	1
virtuell_screening	1

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