lilou's library 32 articles Export

	GENOMICS: Lining Up to Avoid Bias [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 416-417. by Antonis Rokas posted to alignment_comparison by lilou on 2008-02-05 09:06:48 as along with 8 people treangen operon dayjm cjeans dandaman renatomilani bpcusack gjuggler
	Alignment Uncertainty and Genomic Analysis [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476. by Karen M. Wong, Marc A. Suchard, John P. Huelsenbeck posted to alignment_comparison by lilou on 2008-02-05 09:04:41 as along with 33 people and 2 groups Jporci operon walshtp darian ptrobajo friendpine skembel druvus treangen bpb aprasad dayjm pradiptaray dpollard tny djkt cjeans zwang lisa1 cactus biomcgary dandaman gjuggler renatomilani mclarenv youdon bpcusack guhjy jdelcampo adacier gracio timflutre jfr EisenLab microbiology_nijmegen
	MCALIGN: Stochastic Alignment of Noncoding DNA Sequences Based on an Evolutionary Model of Sequence Evolution [My Copy] Genome Res., Vol. 14, No. 3. (1 March 2004), pp. 442-450. by Peter D. Keightley, Toby Johnson posted to alignment alignment_comparison conserved_noncoding_seq by lilou on 2007-10-01 10:44:06 as along with 2 people and 1 group penka adijr Nie
	Intron Length Evolution in Drosophila [My Copy] Mol Biol Evol, Vol. 23, No. 11. (1 November 2006), pp. 2203-2213. by Daven C. Presgraves posted to divergence drosophila evolution genome_size_intron by lilou on 2007-10-01 10:41:49 as along with 6 people and 1 group climb0910 druvus aprasad JAShapiro indigoviolet dpollard EisenLab
	Mind the Gaps: Evidence of Bias in Estimates of Multiple Sequence Alignments. [My Copy] Mol Biol Evol (20 August 2007) by Tanya Golubchik, Michael J J. Wise, Simon Easteal, Lars S S. Jermiin posted to alignment_comparison indel occuracy by lilou on 2007-08-30 09:14:51 as along with 7 people natstreet BioNica treangen druvus zwang dandaman caseybrown
	Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments [My Copy] Mol Biol Evol, Vol. 24, No. 6. (1 June 2007), pp. 1380-1383. by Giddy Landan, Dan Graur posted to alignment_comparison by lilou on 2007-08-27 10:14:39 as along with 9 people and 1 group treangen druvus aprasad rvosa BioNica stajich cjeans zwang mailund FAB-lab
	On the Incidence of Intron Loss and Gain in Paralogous Gene Families [My Copy] Mol Biol Evol (29 April 2007), msm082. by Scott W. Roy, David Penny posted to gain intron loss by lilou on 2007-08-20 10:06:45 as along with 2 people and 1 group stajich jwestbrook King_Lab
	Indel evolution of mammalian introns and the utility of non-coding nuclear markers in eutherian phylogenetics [My Copy] Molecular Phylogenetics and Evolution, Vol. 42, No. 3. (March 2007), pp. 827-837. by Conrad A. Matthee, Geeta Eick, Sandi Willows-Munro, Claudine Montgelard, Amanda T. Pardini, Terence J. Robinson posted to evolution indel intron by lilou on 2007-07-05 15:17:05 as along with 1 person aprasad
	Measuring the accuracy of genome-size multiple alignments [My Copy] Genome Biology, Vol. 8 (26 June 2007), R124. by Amol Prakash, Martin Tompa posted to alignment comparison occuracy by lilou on 2007-07-05 15:16:01 as along with 5 people and 2 groups druvus treangen dpollard AaronDarling stajich EisenLab Mycology
	What controls the length of noncoding DNA? [My Copy] Curr Opin Genet Dev, Vol. 11, No. 6. (December 2001), pp. 652-659. by J. M. Comeron posted to length noncoding by lilou on 2007-07-05 14:58:05 as along with 3 people and 1 group aprasad penka miniprep Nie
	Patterns and rates of intron divergence between humans and chimpanzees. [My Copy] Genome biology, Vol. 8, No. 2. (19 February 2007), R21. by Elodie Gazave, Tomàs Marqués-Bonet, Olga Fernando, Brian Charlesworth, Arcadi Navarro posted to divergence intron by lilou on 2007-06-28 15:56:40 as along with 6 people and 2 groups gregoryross robfsouza inesdesantiago nickluscombe cisevol hdopazo EBI-regulation cis-regulatory-evolution
	INDELSCAN: a web server for comparative identification of species-specific and non-species-specific insertion/deletion events. [My Copy] Nucleic Acids Res (21 May 2007) by Feng-Chi C. Chen, Chueng-Jong J. Chen, Trees-Juen J. Chuang posted to indel by lilou on 2007-06-12 08:56:59 as along with 5 people and 1 group natstreet druvus guhjy aprasad dpollard EisenLab
	SinicView: a visualization environment for comparisons of multiple nucleotide sequence alignment tools. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by A. C. Shih, D. T. Lee, L. Lin, et al.C. L. Peng, S. H. Chen, Y. W. Wu, C. Y. Wong, M. Y. Chou, T. C. Shiao, M. F. Hsieh posted to alignment_comparison by lilou on 2007-06-11 10:13:10 as along with 2 people aprasad chodar
	PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny. [My Copy] PLoS computational biology, Vol. 1, No. 7. (December 2005) by Rahul Siddharthan, Eric D. Siggia, Erik van Nimwegen posted to motif by lilou on 2007-06-08 09:26:41 as along with 17 people and 3 groups farhat wowalz aprasad cajunsushi treangen druvus ana postrational dquest AaronDarling nickluscombe noano adsmitty lusk idonaldson yevishere isimpson structural_bioinformatics Bioinformatics EBI-regulation
	Sigma: multiple alignment of weakly-conserved non-coding DNA sequence. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (16 March 2006) by Rahul Siddharthan posted to alignment noncoding by lilou on 2007-06-08 09:24:23 as along with 3 people and 2 groups aprasad cisevol dpollard cis-regulatory-evolution EisenLab
	PIP: a database of potential intron polymorphism markers. [My Copy] Bioinformatics (1 June 2007) by Long Yang, Gulei Jin, Xiangqian Zhao, Yan Zheng, Zhaohua Xu, Weiren Wu posted to intron_polymorphism by lilou on 2007-06-06 12:39:43 as along with 1 person guhjy
	Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content [My Copy] Genome Biology, Vol. 6, No. 8. (2005), R67. by Penelope Haddrill, Brian Charlesworth, Daniel Halligan, Peter Andolfatto posted to drosophila intron by lilou on 2007-05-30 14:52:01 as along with 3 people and 2 groups gregoryross penka cisevol Nie cis-regulatory-evolution
	Evolutionary constraints in conserved nongenic sequences of mammals [My Copy] Genome Res., Vol. 15, No. 10. (1 October 2005), pp. 1373-1378. by Peter D. Keightley, Gregory V. Kryukov, Shamil Sunyaev, Daniel L. Halligan, Daniel J. Gaffney posted to conserved_noncoding_seq by lilou on 2007-05-30 14:50:09 as along with 4 people and 1 group provero penka miniprep ankur_iitg Nie
	The Functions of Introns: From Junk DNA to Designed DNA [My Copy] posted to intron_function by lilou on 2007-05-30 14:48:59 as along with 1 person miniprep
	Benchmarking tools for the alignment of functional noncoding DNA. [My Copy] BMC Bioinformatics, Vol. 5 (21 January 2004) by D. A. Pollard, C. M. Bergman, J. Stoye, S. E. Celniker, M. B. Eisen posted to alignment conserved_noncoding_seq by lilou on 2007-05-30 14:45:01 as along with 6 people and 1 group cap1 indigoviolet adijr idonaldson gjuggler nklee EisenLab
	Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments [My Copy] BMC Bioinformatics, Vol. 7 (14 August 2006), 376. by Daniel A. Pollard, Alan M. Moses, Venky N. Iyer, Michael B. Eisen posted to alignment conserved_seq by lilou on 2007-05-30 14:44:11 as along with 6 people and 2 groups aprasad dpollard lusk Garamonfok cisevol emptyhb EisenLab cis-regulatory-evolution
	Intron Size and Exon Evolution in Drosophila [My Copy] Genetics, Vol. 170, No. 1. (1 May 2005), pp. 481-485. by Gabriel Marais, Pierre Nouvellet, Peter D. Keightley, Brian Charlesworth posted to intron_size by lilou on 2007-05-30 14:36:45 as along with 1 person and 1 group penka Nie
	Genome size and intron size in Drosophila. [My Copy] Mol Biol Evol, Vol. 15, No. 6. (June 1998), pp. 770-773. by E. N. Moriyama, D. A. Petrov, D. L. Hartl posted to genome_size_intron by lilou on 2007-05-30 14:35:04 as along with 2 people and 1 group brant penka Nie
	"Genome design" model: Evidence from conserved intronic sequence in human-mouse comparison [My Copy] Genome Res., Vol. 16, No. 3. (1 March 2006), pp. 347-354. by Alexander E. Vinogradov posted to genome_design by lilou on 2007-05-30 14:30:42 as along with 5 people and 2 groups aprasad tuck indigoviolet penka miniprep EisenLab Nie
	'Genome design' model and multicellular complexity: golden middle. [My Copy] Nucleic Acids Res, Vol. 34, No. 20. (2006), pp. 5906-5914. by A. E. Vinogradov posted to genome_design by lilou on 2007-05-30 14:29:49 as
	The genome size evolution of medaka (Oryzias latipes) and fugu (Takifugu rubripes). [My Copy] Genes Genet Syst, Vol. 82, No. 2. (April 2007), pp. 135-144. by S. Imai, T. Sasaki, A. Shimizu, S. Asakawa, H. Hori, N. Shimizu posted to genome_size by lilou on 2007-05-30 14:26:42 as along with 1 person and 1 group jwestbrook King_Lab
	Three distinct modes of intron dynamics in the evolution of eukaryotes. [My Copy] Genome Res (10 May 2007) by Liran Carmel, Yuri I I. Wolf, Igor B B. Rogozin, Eugene V V. Koonin posted to intron_dynamic by lilou on 2007-05-30 14:22:57 as along with 7 people and 3 groups climb0910 dchughes penka djkt jwestbrook cabbagezs seitentaisei G4ID King_Lab Genetics-of-Gambling
	Evolutionarily conserved genes preferentially accumulate introns [My Copy] Genome Research, Vol. 17, No. 7. (10 July 2007), pp. 1045-1050. by Liran Carmel, Igor B. Rogozin, Yuri I. Wolf, Eugene V. Koonin posted to intron_dynamic by lilou on 2007-05-30 14:22:17 as along with 6 people and 2 groups operon balicea dchughes djkt cabbagezs xingxu G4ID Genetics-of-Gambling
	A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing [My Copy] Genome Research, Vol. 17, No. 7. (24 July 2007), pp. 1023-1033. by Rodger B. Voelker, J. Andrew Berglund posted to conserved_noncoding_seq by lilou on 2007-05-30 14:21:13 as along with 5 people and 2 groups jrhill dchughes djkt olympos rvoelker G4ID Genetics-of-Gambling
	The mode and tempo of genome size evolution in eukaryotes. [My Copy] Genome Res (9 April 2007) by Matthew J J. Oliver, Dmitri Petrov, David Ackerly, Paul Falkowski, Oscar M M. Schofield posted to genome_size by lilou on 2007-05-30 14:18:58 as along with 5 people and 3 groups jbsaltz aprasad dpollard dchughes diamantis EisenLab G4ID Genetics-of-Gambling
	Intron-genome size relationship on a large evolutionary scale. [My Copy] J Mol Evol, Vol. 49, No. 3. (September 1999), pp. 376-384. by A. E. Vinogradov posted to genome_size_intron by lilou on 2007-05-30 14:15:59 as along with 1 person and 1 group penka Nie
	Computation and Analysis of Genomic Multi-Sequence Alignments [My Copy] Annual Review of Genomics and Human Genetics, Vol. 8, No. 1. (9 May 2007), pp. 193-213. by Mathieu Blanchette posted to alignment large by lilou on 2007-05-30 14:13:48 as along with 7 people and 1 group natstreet druvus treangen dpollard nklee maximilianh aprasad EisenLab

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alignment	6
alignment_comparison	6
conserved_noncoding_seq	4
intron	4
genome_size_intron	3
indel	3
divergence	2
drosophila	2
evolution	2
genome_design	2
genome_size	2
intron_dynamic	2
noncoding	2
occuracy	2
comparison	1
conserved_seq	1
gain	1
intron_function	1
intron_polymorphism	1
intron_size	1
large	1
length	1
loss	1
motif	1

lilou's library 32 articles Export

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