lizbiogen's library 157 articles Export

	Statistical Phylogeography [My Copy] Annual Review of Ecology, Evolution, and Systematics, Vol. 40, No. 1. (2009), pp. 593-612. by Lacey L. Knowles posted to statistical_phylogeography phylogeography by lizbiogen on 2009-11-23 13:48:03 as
	Delimiting Species without Monophyletic Gene Trees [My Copy] Syst Biol, Vol. 56, No. 6. (1 December 2007), pp. 887-895. by Lacey L. Knowles, Bryan C. Carstens posted to species_trees monophyly gene_trees gene_tree by lizbiogen on 2009-11-23 13:41:33 as along with 1 person and 1 group stajich Mycology
	Signals of demographic expansion in Drosophila virilis [My Copy] BMC Evolutionary Biology, Vol. 8, No. 1. (25 February 2008), 59. by Patricia Mirol, Jarkko Routtu, Anneli Hoikkala, Roger Butlin posted to virilis_group phylogeography by lizbiogen on 2009-11-12 18:55:02 as along with 1 person JustinCrocker
	Taxonomy and molecular phylogeny of the Asian <i>Paraleucophenga</i> Hendel (Diptera, Drosophilidae) [My Copy] Zoological Journal of the Linnean Society, Vol. 155, No. 3. (2009), pp. 615-629. by O. Feng Zha, O. Jian-Jun Ga, N. Hong-Wei Che posted to phylogeny paraleucophenga morphological_key morphological_data by lizbiogen on 2009-11-12 18:51:44 as
	Multiple introductions of the <i>Spiroplasma</i> bacterial endosymbiont into <i>Drosophila</i> [My Copy] Molecular Ecology, Vol. 18, No. 6. (2009), pp. 1294-1305. by Tamara S. Haselkorn, Therese A. Markow, Nancy A. Moran posted to spiroplasma by lizbiogen on 2009-11-04 12:14:31 as
	Variable Incidence of Spiroplasma Infections in Natural Populations of Drosophila Species [My Copy] PLoS ONE, Vol. 4, No. 5. (28 May 2009), e5703. by Thomas Watts, Tamara S. Haselkorn, Nancy A. Moran, Therese A. Markow posted to spiroplasma by lizbiogen on 2009-11-04 12:11:08 as
	Male–male competition, female mate choice and their interaction: determining total sexual selection [My Copy] Journal of Evolutionary Biology, Vol. 22, No. 1. (2009), pp. 13-26. by T. John Hun, Casper J. Breuker, Jennifer A. Sadowski, Allen J. Moore posted to sexual_selection sexual_conflict by lizbiogen on 2009-10-29 17:14:03 as
	How is sexual conflict over parental care resolved? A meta-analysis [My Copy] Journal of Evolutionary Biology, Vol. 22, No. 9. (2009), pp. 1800-1812. by F. Harrison, Z. Barta, I. Cuthill, T. Székely posted to sexual_selection sexual_conflict by lizbiogen on 2009-10-29 17:09:50 as along with 2 people edmund MickElliot
	Sequential Evolution of a Symbiont Inferred From the Host: Wolbachia and Drosophila simulans [My Copy] Mol Biol Evol, Vol. 21, No. 3. (1 March 2004), pp. 428-442. by Ballard posted to wolbachia by lizbiogen on 2009-10-29 16:48:32 as
	Influence of Two Wolbachia Strains on Population Structure of East African Drosophila simulans [My Copy] Genetics, Vol. 165, No. 4. (1 December 2003), pp. 1959-1969. by Matthew D. Dean, Kirrie J. Ballard, Anne Glass, Ballard posted to wolbachia phylogeography mitochondrial_genome mitochondrial_genes mitochondrial_dna mitochondria by lizbiogen on 2009-10-29 16:42:36 as
	DIVERGENCE OF MITOCHONDRIAL DNA IS NOT CORROBORATED BY NUCLEAR DNA, MORPHOLOGY, OR BEHAVIOR IN DROSOPHILA SIMULANS [My Copy] Evolution, Vol. 56, No. 3. (2002), pp. 527-545. by William, Barry Chernoff, Avis C. James posted to wolbachia phylogeography phylogeny mitochondrial_genome mitochondrial_genes mitochondrial_dna mitochondria by lizbiogen on 2009-10-29 16:35:51 as
	THE POPULATION BIOLOGY OF MITOCHONDRIAL DNA AND ITS PHYLOGENETIC IMPLICATIONS [My Copy] Annual Review of Ecology, Evolution, and Systematics, Vol. 36, No. 1. (2005), pp. 621-642. by William, David M. Rand posted to phylogenetics mitochondrial_dna by lizbiogen on 2009-10-29 16:13:23 as along with 1 person druvus
	DNA taxonomy and phylogeography of beetles of the Falkland Islands (Islas Malvinas) [My Copy] Molecular Phylogenetics and Evolution (31 August 2009) by Anna Papadopoulou, Alex G. Jones, Peter M. Hammond, Alfried P. Vogler posted to phylogeography dna_taxonomy barcode by lizbiogen on 2009-10-28 19:51:21 as
	Polyphyly of the Zaprionus genus group (Diptera: Drosophilidae) [My Copy] Molecular Phylogenetics and Evolution (15 September 2009) by Amir Yassin, Jean-Luc Da Lage, Jean R. David, et al.Masanori Kondo, Lilian Madi-Ravazzi, Stéphane R. Prigent, Masanori J. Toda posted to zaprionus samoaia phylogeny phorticella drosophilidae by lizbiogen on 2009-10-28 19:38:49 as along with 1 person gwallau
	Drosophila Fallén, 1823 (Insecta, Diptera): proposed conservation of usage [My Copy] Bulletin of Zoological Nomenclature, Vol. 64, No. 4. (2007), pp. 238-242. by Kim van der Linde, Gerhard Bächli, Masanori J. Toda, Wen-Xia Zhang, Yao-Guang Hu, Greg S. Spicer posted to taxonomy drosophilidae by lizbiogen on 2009-10-28 17:51:46 as
	Estimating Species Phylogeny from Gene-Tree Probabilities Despite Incomplete Lineage Sorting: An Example from Melanoplus Grasshoppers [My Copy] Syst Biol, Vol. 56, No. 3. (1 June 2007), pp. 400-411. by Bryan C. Carstens, Lacey L. Knowles posted to species_trees incongruence incomplete_lineage_sorting gene_trees by lizbiogen on 2009-10-25 11:25:18 as along with 1 person akifumi
	Majority-Rule Supertrees [My Copy] Syst Biol, Vol. 56, No. 3. (1 June 2007), pp. 445-452. by James A. Cotton, Mark Wilkinson posted to supertree by lizbiogen on 2009-10-25 11:23:09 as along with 1 person akifumi
	Species Trees from Gene Trees: Reconstructing Bayesian Posterior Distributions of a Species Phylogeny Using Estimated Gene Tree Distributions [My Copy] Syst Biol, Vol. 56, No. 3. (1 June 2007), pp. 504-514. by Liang Liu, Dennis K. Pearl posted to species_trees gene_trees best by lizbiogen on 2009-10-25 11:19:01 as along with 3 people druvus aprasad akifumi
	BEST: Bayesian estimation of species trees under the coalescent model [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2542-2543. by Liang Liu posted to species_trees gene_trees best by lizbiogen on 2009-10-25 11:15:40 as along with 6 people robfsouza AaronDarling gjuggler druvus alexeid nuin
	ESTIMATING SPECIES TREES USING MULTIPLE-ALLELE DNA SEQUENCE DATA [My Copy] Evolution, Vol. 62, No. 8. (August 2008), pp. 2080-2091. by Liang Liu, Dennis K. Pearl, Robb T. Brumfield, Scott V. Edwards posted to species_trees gene_trees best by lizbiogen on 2009-10-25 11:15:16 as along with 2 people AaronDarling druvus
	High-resolution species trees without concatenation [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 14. (3 April 2007), pp. 5936-5941. by Scott V. Edwards, Liang Liu, Dennis K. Pearl posted to species_trees gene_trees best by lizbiogen on 2009-10-25 11:11:38 as along with 8 people and 1 group robfsouza treangen druvus alexeid stevanspringer operon aprasad zwang FAB-lab
	The insect cytochrome oxidase I gene: evolutionary patterns and conserved primers for phylogenetic studies [My Copy] Insect Molecular Biology, Vol. 5, No. 3. (1996), pp. 153-165. by D. H. Lunt, D. X. Zhang, J. M. Szymura, O. M. Hewltt posted to no-tag by lizbiogen on 2009-10-23 18:48:20 as along with 1 person operon
	A phylogeny of Drosophilidae using the <i>Amyrel</i> gene: questioning the <i>Drosophila melanogaster</i> species group boundaries [My Copy] Journal of Zoological Systematics and Evolutionary Research, Vol. 45, No. 1. (February 2007), pp. 47-63. by J. L. Da Lage, G. J. Kergoat, F. Maczkowiak, J. F. Silvain, M. L. Cariou, D. Lachaise posted to phylogeny drosophilidae amyrel by lizbiogen on 2009-10-22 13:55:10 as along with 1 person gwallau
	The potential and peril of the supertree approach: A response to van der Linde and Houle [My Copy] Insect Systematics & Evolution (2008), pp. 269-280. by Patrick M. O'Grady, Richard T. Lapoint, Gordon M. Bennett posted to supertree phylogeny drosophilidae by lizbiogen on 2009-10-21 22:30:40 as
	Response to O'Grady et al.: The potential and peril of the supertree approach [My Copy] Insect Systematics & Evolution (2008), pp. 281-286. by Kim van der Linde, David Houle posted to supertree phylogeny drosophilidae by lizbiogen on 2009-10-21 22:27:48 as
	Polyphyly of Lordiphosa and its relationships in Drosophilinae (Diptera: Drosophilidae) [My Copy] Systematic Entomology, Vol. 26, No. 1. (2001), pp. 15-31. by Yao-Guang Hu, Masanori J. Toda posted to phylogeny lordiphosa drosophilidae by lizbiogen on 2009-10-21 22:20:09 as
	Phylogenetic taxonomy in Drosophila [My Copy] Fly, Vol. 3, No. 1. (2009), pp. 10-14. by P. M. O'Grady, T. A. Markow posted to phylogeny drosophila dr dna_taxonomy by lizbiogen on 2009-10-20 12:36:28 as
	Population Genetics of the Developmental Gene optomotor-blind (omb) in Drosophila polymorpha: Evidence for a Role in Abdominal Pigmentation Variation [My Copy] Genetics, Vol. 168, No. 4. (1 December 2004), pp. 1999-2010. by Jennifer A. Brisson, Alan R. Templeton, Ian Duncan posted to population_genetics cardini_group by lizbiogen on 2009-10-16 15:10:03 as
	Recent advances in DNA taxonomy [My Copy] Journal of Zoological Systematics and Evolutionary Research, Vol. 45, No. 1. (February 2007), pp. 1-10. by A. P. Vogler, M. T. Monaghan posted to dna_taxonomy dna_barcoding by lizbiogen on 2009-10-08 19:27:39 as
	Taxonomy and molecular phylogeny of the <i>Phortica hani</i> species complex (Diptera: Drosophilidae) [My Copy] Zoological Journal of the Linnean Society, Vol. 157, No. 2. (2009), pp. 359-372. by H. E. Xiaofang, O. Jianjun Ga, O. Huazhi Ca, G. Xiaolei Zhan, N. Hongwei Che posted to taxonomy phylogeny phortica drosophilidae by lizbiogen on 2009-10-08 18:29:18 as
	Inferring Phylogeny Despite Incomplete Lineage Sorting [My Copy] Syst Biol, Vol. 55, No. 1. (1 February 2006), pp. 21-30. by Wayne P. Maddison, Lacey L. Knowles posted to species_trees reconciled_tree gene_trees by lizbiogen on 2009-09-21 22:01:47 as along with 2 people AaronDarling beerli
	Gene Trees in Species Trees [My Copy] Syst Biol, Vol. 46, No. 3. (1 September 1997), pp. 523-536. by Wayne P. Maddison posted to species_trees reconciled_tree gene_tree by lizbiogen on 2009-09-21 21:59:40 as along with 1 person parnell
	The phylogeny of closely related species as revealed by the genealogy of a speciation gene, Odysseus [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 10. (9 May 2000), pp. 5313-5316. by Chau-Ti Ting, Shun-Chern Tsaur, Chung-I Wu posted to species_trees speciation_gene by lizbiogen on 2009-09-21 21:50:09 as
	Discordance of Species Trees with Their Most Likely Gene Trees [My Copy] PLoS Genet, Vol. 2, No. 5. (26 May 2006), e68. by James H. Degnan, Noah A. Rosenberg posted to species_trees incomplete_lineage_sorting gene_trees by lizbiogen on 2009-09-21 21:44:26 as along with 3 people druvus balajis shoshin
	Gene trees and species trees – mutual influences and interdependences of population genetics and systematics [My Copy] Journal of Zoological Systematics and Evolutionary Research, Vol. 47, No. 3. (2009), pp. 209-218. by Frank E. Zachos posted to phylogeography gene_trees by lizbiogen on 2009-09-18 19:19:13 as
	Relative apparent synapomorphy analysis (RASA). I: The statistical measurement of phylogenetic signal [My Copy] Mol Biol Evol, Vol. 13, No. 6. (1 July 1996), pp. 749-757. by J. Lyons-Weiler, G. A. Hoelzer, R. J. Tausch posted to rasa phylogenetics phylogenetic_signal by lizbiogen on 2009-08-29 02:04:48 as
	The root of the mammalian tree inferred from whole mitochondrial genomes [My Copy] Molecular Phylogenetics and Evolution, Vol. 28, No. 2. (August 2003), pp. 171-185. by Matthew J. Phillips, David Penny posted to saturation phylogenetics mitochondrial_genes by lizbiogen on 2009-08-26 16:58:51 as
	Bayesian Estimation of Concordance among Gene Trees [My Copy] Mol Biol Evol, Vol. 24, No. 2. (1 February 2007), pp. 412-426. by Cecile Ane, Bret Larget, David A. Baum, Stacey D. Smith, Antonis Rokas posted to phylogenetics gene_trees concordance_among_trees bayesian_inference by lizbiogen on 2009-08-26 16:54:33 as along with 3 people dplachet operon aprasad
	On the Evolution of Dopa decarboxylase (Ddc) and Drosophila Systematics [My Copy] Journal of Molecular Evolution, Vol. 48, No. 4. (24 April 1999), pp. 445-462. by Andrey Tatarenkov, Jan Kwiatowski, Douglas Skarecky, Eladio Barrio, Francisco J. Ayala posted to phylogeny drosophila ddc by lizbiogen on 2009-08-20 20:54:13 as
	Principles of Genome Evolution in the Drosophila melanogaster Species Group [My Copy] PLoS Biol, Vol. 5, No. 6. (5 June 2007), e152. by José M. Ranz, Damien Maurin, Yuk S. Chan, et al.Marcin von Grotthuss, Ladeana W. Hillier, John Roote, Michael Ashburner, Casey M. Bergman posted to molecular_evolution genomics by lizbiogen on 2009-08-20 13:21:02 as along with 3 people and 1 group operon emmahe biomcgary Marcotte_Lab
	Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers [My Copy] Annals of the Entomological Society of America, Vol. 87, No. 6., pp. 651-701. by C. Simon, C. T. Storrs, F. Frati, et al.A. Beckenbach, B. Crespi, H. Liu, P. Flook posted to primers mitochondrial_genes by lizbiogen on 2009-08-19 21:14:22 as
	Structure and evolution of the mitochondrial DNA complete control region in the <i>Drosophila subobscura</i> subgroup [My Copy] Insect Molecular Biology, Vol. 10, No. 6. (2001), pp. 573-578. by A. Brehm, D. J. Harris, M. Hernández, et al.V. M. Cabrera, J. M. Larruga, F. M. Pinto, A. M. González posted to mitochondrial_genes control_region by lizbiogen on 2009-08-19 20:51:18 as
	Phylogeography of Drosophila subobscura from north Atlantic islands inferred from mtDNA A+T rich region sequences [My Copy] Molecular Phylogenetics and Evolution, Vol. 30, No. 3. (March 2004), pp. 829-834. by António Brehm, Harris, Mariano Hernández, et al.José A. Perez, José M. Larruga, Francisco M. Pinto, Ana M. González posted to phylogeography obscura_group by lizbiogen on 2009-08-19 20:41:08 as
	ABDOMINAL PIGMENTATION VARIATION IN <i>DROSOPHILA POLYMORPHA</i>: GEOGRAPHIC VARIATION IN THE TRAIT, AND UNDERLYING PHYLOGEOGRAPHY [My Copy] Evolution, Vol. 59, No. 5. (2005), pp. 1046-1059. by Jennifer A. Brisson, Daniela C. De Toni, Ian Duncan, Alan R. Templeton posted to phylogeography cardini_group by lizbiogen on 2009-08-19 20:33:49 as
	Isolation and characterization of microsatellites in <i>Drosophila virilis</i> and their cross species amplification in members of the <i>D. virilis</i> group [My Copy] Molecular Ecology Notes, Vol. 2, No. 4. (2002), pp. 593-597. by S. Huttunen, C. Schlötterer posted to primers microsatellites by lizbiogen on 2009-08-19 20:27:09 as
	Microsatellite analysis indicates genetic differentiation of the neo-sex chromosomes in Drosophila americana americana [My Copy] Heredity, Vol. 85, No. 6. (1 December 2000), pp. 610-616. by Christian Schlotterer posted to virilis_group microsatellites by lizbiogen on 2009-08-19 20:25:11 as
	A multilocus microsatellite phylogeny of the Drosophila virilis group [My Copy] Heredity, Vol. 93, No. 2. (9 June 2004), pp. 161-165. by L. Orsini, S. Huttunen, C. Schlotterer posted to virilis_group virilis-repleta phylogeny microsatellites by lizbiogen on 2009-08-19 20:15:42 as
	Phylogeographic patterns in <i>Drosophila montana</i> [My Copy] Molecular Ecology, Vol. 16, No. 5. (March 2007), pp. 1085-1097. by P. M. Mirol, M. A. Schäfer, L. Orsini, et al.J. Routtu, C. Schlötterer, A. Hoikkala, R. K. Butlin posted to virilis_group virilis-repleta phylogeography drosophila_phylogeography by lizbiogen on 2009-08-19 20:09:23 as along with 1 person gwallau
	High mitochondrial diversity in geographically widespread butterflies of Madagascar: A test of the DNA barcoding approach [My Copy] Molecular Phylogenetics and Evolution, Vol. 50, No. 3. (March 2009), pp. 485-495. by Marjorie C. Linares, Iván D. Soto-Calderón, David C. Lees, Nicola M. Anthony posted to barcode by lizbiogen on 2009-08-19 19:59:32 as along with 1 person jlncdr
	New Inferences from Tree Shape: Numbers of Missing Taxa and Population Growth Rates [My Copy] Syst Biol, Vol. 51, No. 6. (1 December 2002), pp. 881-888. by O. G. Pybus, A. Rambaut, E. C. Holmes, P. H. Harvey posted to radiation by lizbiogen on 2009-08-18 16:52:59 as

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phylogeny	35
phylogenetics	25
barcode	17
drosophila	14
drosophilidae	13
phylogeography	12
gene_trees	10
mitochondrial_genes	10
species_trees	10
molecular_clock	6
diversity	5
genomics	5
modeling	5
neotropical	5
nossos	5
best	4
cardini_group	4
dna_taxonomy	4
mitochondrial_dna	4
radiation	4
supertree	4
taxonomy	4
virilis_group	4
diptera	3
divergence_time	3
introgression	3
microsatellites	3
mitochondria	3
model	3
transposable_element	3
tripunctata_radiation	3
virilis-repleta	3
wolbachia	3
zaprionus	3
alignment	2
bayesian_inference	2
beast	2
character_congruence	2
classification	2
coalescent	2
evolution	2
gene_tree	2
hawaiian_drosophilids	2
incomplete_lineage_sorting	2
mitochondrial_genome	2
molecular	2
molecular_evolution	2
niche_conservatism	2
niche_modeling	2
parsimony_ratchet	2
phyloclimatic_modeling	2
poy	2
primers	2
reconciled_tree	2
repleta_group	2
retrotransposons	2
sexual_conflict	2
sexual_selection	2
simultaneous_analysis	2
speciation	2
species_richness	2
spiroplasma	2
transposons	2
willistoni_group	2
abc	1
adaptive_evolution	1
aegla	1
aminoacid_substitution_models	1
amyrel	1
ananassae	1
bayes_factor	1
beringia	1
bering_strait	1
biogeography	1
bionj	1
centromere-specific_histone	1
chromosomal_evolution	1
cid	1
coi_and_coii	1
concordance_among_trees	1
conservation	1
control_region	1
crustacea	1
ddc	1
divergent_selection	1
dna_barcoding	1
dr	1
drosophila_phylogeography	1
drosophilinae	1
dunni_subgroup	1
ecological_niches	1
environmental_data	1
extinction_rate	1
guarani_group	1
gypsy	1
incongruence	1
insect	1
lek_behavior	1
lordiphosa	1
macrobrachium	1
melanica_group	1
melanogaster_group	1
mesophragmatica_group	1
micropia	1
mitochondrial_pseudogene	1
molecular_systematics	1
monophyly	1
morphological_data	1
morphological_key	1
ncpa	1
nested_clade_phylogeographic_analysis	1
new_synthesis	1
niche_evolution	1
obscura_group	1
paleoclimate	1
panama_isthmus	1
paraleucophenga	1
pca	1
phortica	1
phorticella	1
phylogenetic_signal	1
polytomy	1
population_genetics	1
positive_selection	1
protein_model	1
rasa	1
recombination	1
rna_folding	1
robusta_group	1
saltans_group	1
samoaia	1
saturation	1
science_phylosophy	1
sex_linked_chromossomes	1
sophophora	1
speciation_gene	1
speciation_rate	1
statistical_phylogeography	1
synonymous_substitutions	1
systematics	1
tnt	1
y_chromosome	1
zygothrica	1

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