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lpfernandes's library [69 articles]

Recent papers added to lpfernandes's library.
  • Activation of rac and cdc42 video imaged by fluorescent resonance energy transfer-based single-molecule probes in the membrane of living cells.
    Mol Cell Biol, Vol. 22, No. 18. (September 2002), pp. 6582-6591.
    by RE Itoh, K Kurokawa, Y Ohba, H Yoshizaki, N Mochizuki, M Matsuda
    posted to no-tag by lpfernandes on 2008-03-25 18:05:24 as **
  • Commitment point during G0-->G1 that controls entry into the cell cycle.
    Mol Cell Biol, Vol. 23, No. 7. (April 2003), pp. 2351-2361.
    by NC Lea, SJ Orr, K Stoeber, GH Williams, EW Lam, MA Ibrahim, GJ Mufti, NS Thomas
    posted to no-tag by lpfernandes on 2008-03-25 18:01:13 as ** along with 1 person dbenn
  • Hubs with network motifs organize modularity dynamically in the protein-protein interaction network of yeast.
    PLoS ONE, Vol. 2, No. 11. (2007)
    by G Jin, S Zhang, XS Zhang, L Chen
    posted to no-tag by lpfernandes on 2008-01-18 16:46:46 as ** along with 2 people cabbagezs cdeane
  • A comprehensive two-hybrid analysis to explore the yeast protein interactome.
    Proc Natl Acad Sci U S A, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574.
    by T Ito, T Chiba, R Ozawa, M Yoshida, M Hattori, Y Sakaki
    posted to no-tag by lpfernandes on 2007-05-31 13:39:10 as ** along with 14 people and 2 groups carlk csanford adiel dragonrez okarsligil lfriedl chad_davis balajis nuke2005 kengg ruvido gcalda shikin hplatero kdl Bioinformatics
  • Large-scale identification of protein-protein interaction of Escherichia coli K-12.
    Genome Res (10 April 2006)
    by Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng C Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori
    posted to no-tag by lpfernandes on 2007-05-31 13:29:00 as ** along with 4 people and 1 group tny dquest nickluscombe aswin EBI-regulation
  • Networking proteins in yeast
    PNAS, Vol. 98, No. 8. (10 April 2001), pp. 4277-4278.
    by Tony R Hazbun, Stanley Fields
    posted to no-tag by lpfernandes on 2007-05-31 13:27:02 as **
  • Towards a proteome-scale map of the human protein–protein interaction network
    Nature (28 September 2005)
    by Jean-François Rual, Kavitha Venkatesan, Tong Hao, Tomoko Hirozane-Kishikawa, Amélie Dricot, Ning Li, Gabriel F Berriz, Francis D Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou, Niels Klitgord, Christophe Simon, Mike Boxem, Stuart Milstein, Jennifer Rosenberg, Debra S Goldberg, Lan V Zhang, Sharyl L Wong, Giovanni Franklin, Siming Li, Joanna S Albala, Janghoo Lim, Carlene Fraughton, Estelle Llamosas, Sebiha Cevik, Camille Bex, Philippe Lamesch, Robert S Sikorski, Jean Vandenhaute, Huda Y Zoghbi, Alex Smolyar, Stephanie Bosak, Reynaldo Sequerra, Lynn Doucette-Stamm, Michael E Cusick, David E Hill, Frederick P Roth, Marc Vidal
    posted to no-tag by lpfernandes on 2007-05-31 13:23:52 as ** along with 18 people and 2 groups ksiek csanford dragonrez kuhn okarsligil jfr lyongu maryee benny wnpx yoh noano gurkanbebek mbeautru eukfn grahamc antonkratz Evangelia Bioinformatics ParkinsonLab_at_MaRS
  • A discipline of dynamic programming over sequence data
    Science of Computer Programming, Vol. 51, No. 3. (June 2004), pp. 215-263.
    by Robert Giegerich, Carsten Meyer, Peter Steffen
    posted to no-tag by lpfernandes on 2007-05-31 13:22:38 as ** along with 2 people hamish Hosna
  • Merger rates in hierarchical models of galaxy formation
    Mon. Not. Roy. Astron. Soc., Vol. 262 (June 1993), pp. 627-649.
    by C Lacey, S Cole
    posted to no-tag by lpfernandes on 2007-05-31 13:20:35 as ** along with 1 person galtay
  • POPSCOMP: an automated interaction analysis of biomolecular complexes.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by J Kleinjung, F Fraternali
    posted to no-tag by lpfernandes on 2007-05-31 13:17:42 as ** along with 2 people ffranca marti
  • Pfam: clans, web tools and services.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by RD Finn, J Mistry, B Schuster-Böckler, S Griffiths-Jones, V Hollich, T Lassmann, S Moxon, M Marshall, A Khanna, R Durbin, SR Eddy, EL Sonnhammer, A Bateman
    posted to no-tag by lpfernandes on 2007-05-31 13:11:21 as ** along with 10 people Lombardo_7 phoenixzxl natstreet gbart dullhunk massivemayhem cjeans siebertm pablomendes antonkratz
  • A protein interaction network of the malaria parasite Plasmodium falciparum
    Nature, Vol. 438, No. 7064. (3 November 2005), pp. 103-107.
    by Douglas J Lacount, Marissa Vignali, Rakesh Chettier, Amit Phansalkar, Russell Bell, Jay R Hesselberth, Lori W Schoenfeld, Irene Ota, Sudhir Sahasrabudhe, Cornelia Kurschner, Stanley Fields, Robert E Hughes
    posted to no-tag by lpfernandes on 2007-05-31 13:09:08 as ** along with 8 people and 2 groups csanford ana tmmurali dyermd Sharpshoot becarmson grahamc GeeSharpMinor structural_bioinformatics Bioinformatics
  • Malaria parasite-inhibitory antibody epitopes on Plasmodium falciparum merozoite surface protein-119 mapped by TROSY NMR
    Molecular and Biochemical Parasitology, Vol. 138, No. 1. (November 2004), pp. 29-36.
    by William D Morgan, Matthew J Lock, Thomas A Frenkiel, Munira Grainger, Anthony A Holder
    posted to no-tag by lpfernandes on 2007-05-31 12:49:35 as **
  • Proteins on the surface of the malaria parasite and cell invasion.
    Parasitology, Vol. 108 Suppl (1994)
    by AA Holder
    posted to no-tag by lpfernandes on 2007-05-31 12:47:23 as ** along with 1 person ffranca
  • Malaria Vaccine Development: Current Status
    Parasitology Today, Vol. 14, No. 2. (1 February 1998), pp. 56-64.
    by HD Engers, T Godal
    posted to no-tag by lpfernandes on 2007-05-31 12:46:20 as **
  • Human protein reference database as a discovery resource for proteomics.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by S Peri, JD Navarro, TZ Kristiansen, R Amanchy, V Surendranath, B Muthusamy, TK Gandhi, KN Chandrika, N Deshpande, S Suresh, BP Rashmi, K Shanker, N Padma, V Niranjan, HC Harsha, N Talreja, BM Vrushabendra, MA Ramya, AJ Yatish, M Joy, HN Shivashankar, MP Kavitha, M Menezes, DR Choudhury, N Ghosh, R Saravana, S Chandran, S Mohan, CK Jonnalagadda, CK Prasad, C Kumar-Sinha, KS Deshpande, A Pandey
    posted to no-tag by lpfernandes on 2007-05-30 15:54:15 as ** along with 1 person grahamc
  • DIP: the database of interacting proteins.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 289-291.
    by I Xenarios, DW Rice, L Salwinski, MK Baron, EM Marcotte, D Eisenberg
    posted to no-tag by lpfernandes on 2007-05-30 15:52:22 as ** along with 8 people and 2 groups dragonrez imouthesmp shivaram lfriedl bigbossman bundschu grahamc ichbins81 kdl generif_paper
  • BioGRID: a general repository for interaction datasets.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by C Stark, BJ Breitkreutz, T Reguly, L Boucher, A Breitkreutz, M Tyers
    posted to no-tag by lpfernandes on 2007-05-30 15:50:13 as ** along with 10 people dylanwalker tmmurali dragonrez chasmand carlk jyuh balajis koller nm Evangelia
  • IntAct: an open source molecular interaction database.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by H Hermjakob, L Montecchi-Palazzi, C Lewington, S Mudali, S Kerrien, S Orchard, M Vingron, B Roechert, P Roepstorff, A Valencia, H Margalit, J Armstrong, A Bairoch, G Cesareni, D Sherman, R Apweiler
    posted to no-tag by lpfernandes on 2007-05-30 15:40:30 as ** along with 7 people and 1 group satre jeremymiller irenas fisherp frohike grahamc wilbur dbk-lab
  • IntActopen source resource for molecular interaction data
    Nucleic Acids Research, Vol. 35, No. Supplement 1. (January 2007), pp. D561-D565.
    by Kerrien, , Alam-Faruque, , Aranda, , Bancarz, , Bridge, , Derow, , Dimmer, , Feuermann, , Friedrichsen, , Huntley, , Kohler, , Khadake, , Leroy, , Liban, , Lieftink, , Montecchi-Palazzi, , Orchard, , Risse, , Robbe, , Roechert, , Thorneycroft, , Zhang, , Apweiler, , Hermjakob,
    posted to no-tag by lpfernandes on 2007-05-30 15:39:32 as ** along with 4 people and 3 groups carlk jyuh chad_davis joergkurtwegner Molecular-Modelling Drug-Design Cheminformatics
  • The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.
    Nat Biotechnol, Vol. 22, No. 2. (February 2004), pp. 177-183.
    by H Hermjakob, L Montecchi-Palazzi, G Bader, J Wojcik, L Salwinski, A Ceol, S Moore, S Orchard, U Sarkans, C von Mering, B Roechert, S Poux, E Jung, H Mersch, P Kersey, M Lappe, Y Li, R Zeng, D Rana, M Nikolski, H Husi, C Brun, K Shanker, SG Grant, C Sander, P Bork, W Zhu, A Pandey, A Brazma, B Jacq, M Vidal, D Sherman, P Legrain, G Cesareni, I Xenarios, D Eisenberg, B Steipe, C Hogue, R Apweiler
    posted to no-tag by lpfernandes on 2007-05-30 15:38:23 as ** along with 5 people and 1 group lenov irenas balajis grahamc jmuhlich dbk-lab
  • Yeast Two-Hybrid: State of the Art.
    Biol Proced Online, Vol. 2 (4 October 1999), pp. 1-38.
    by Wim Van Criekinge, Rudi Beyaert
    posted to no-tag by lpfernandes on 2007-05-30 15:27:16 as **
  • Lethality and centrality in protein networks
    Nature, Vol. 411, No. 6833. (3 May 2001), pp. 41-42.
    by H Jeong, SP Mason, AL Barabasi, ZN Oltvai
    posted to no-tag by lpfernandes on 2007-05-30 15:22:52 as ** along with 13 people and 3 groups ethkim cerca iris_2001 kuhn cmmorel nickluscombe gurkanbebek jeremymiller timflutre ruvido gcalda grahamc Evangelia EBI-regulation GeschwindLab ParkinsonLab_at_MaRS
  • Autosomal recessive chronic granulomatous disease caused by defects in NCF-1, the gene encoding the phagocyte p47-phox: mutations not arising in the NCF-1 pseudogenes.
    Blood, Vol. 97, No. 1. (1 January 2001), pp. 305-311.
    by D Noack, J Rae, AR Cross, BA Ellis, PE Newburger, JT Curnutte, PG Heyworth
    posted to no-tag by lpfernandes on 2007-05-29 15:59:32 as **
  • Structures of glycoprotein Ibalpha and its complex with von Willebrand factor A1 domain.
    Science, Vol. 297, No. 5584. (16 August 2002), pp. 1176-1179.
    by EG Huizinga, S Tsuji, RA Romijn, ME Schiphorst, PG de Groot, JJ Sixma, P Gros
    posted to no-tag by lpfernandes on 2007-05-29 15:47:04 as **
  • Pseudo-von Willebrand disease: a mutation in the platelet glycoprotein Ib alpha gene associated with a hyperactive surface receptor.
    Blood, Vol. 81, No. 7. (1 April 1993), pp. 1787-1791.
    by SD Russell, GJ Roth
    posted to no-tag by lpfernandes on 2007-05-29 15:46:14 as **
  • Prothrombin Himi: a compound heterozygote for two dysfunctional prothrombin molecules (Met-337-->Thr and Arg-388-->His).
    Blood, Vol. 80, No. 9. (1 November 1992), pp. 2275-2280.
    by E Morishita, M Saito, I Kumabashiri, H Asakura, T Matsuda, K Yamaguchi
    posted to no-tag by lpfernandes on 2007-05-29 15:31:15 as **
  • Synthesis, structure, and structure-activity relationships of divalent thrombin inhibitors containing an alpha-keto-amide transition-state mimetic.
    Protein Sci, Vol. 5, No. 3. (March 1996), pp. 422-433.
    by R Krishnan, A Tulinsky, GP Vlasuk, D Pearson, P Vallar, P Bergum, TK Brunck, WC Ripka
    posted to no-tag by lpfernandes on 2007-05-29 15:28:50 as **
  • A novel homozygous missense mutation in the apo A-I gene with apo A-I deficiency.
    Arterioscler Thromb Vasc Biol, Vol. 18, No. 3. (March 1998), pp. 389-396.
    by W Huang, J Sasaki, A Matsunaga, H Nanimatsu, K Moriyama, H Han, M Kugi, T Koga, K Yamaguchi, K Arakawa
    posted to no-tag by lpfernandes on 2007-05-29 15:13:25 as **
  • Crystal structure of truncated human apolipoprotein A-I suggests a lipid-bound conformation.
    Proc Natl Acad Sci U S A, Vol. 94, No. 23. (11 November 1997), pp. 12291-12296.
    by DW Borhani, DP Rogers, JA Engler, CG Brouillette
    posted to no-tag by lpfernandes on 2007-05-29 15:10:49 as **
  • Apolipoprotein AI mutation Arg-60 causes autosomal dominant amyloidosis.
    Proc Natl Acad Sci U S A, Vol. 89, No. 16. (15 August 1992), pp. 7389-7393.
    by AK Soutar, PN Hawkins, DM Vigushin, GA Tennent, SE Booth, T Hutton, O Nguyen, NF Totty, TG Feest, JJ Hsuan
    posted to no-tag by lpfernandes on 2007-05-29 15:10:06 as **
  • Cleaved antitrypsin polymers at atomic resolution.
    Protein Sci, Vol. 9, No. 2. (February 2000), pp. 417-420.
    by MA Dunstone, W Dai, JC Whisstock, J Rossjohn, RN Pike, SC Feil, BF Le Bonniec, MW Parker, SP Bottomley
    posted to no-tag by lpfernandes on 2007-05-29 15:04:10 as **
  • A Pro----Leu substitution in codon 369 of the alpha-1-antitrypsin deficiency variant PI MHeerlen.
    Hum Genet, Vol. 81, No. 3. (February 1989), pp. 264-268.
    by MH Hofker, T Nukiwa, HM van Paassen, M Nelen, JA Kramps, EC Klasen, RR Frants, RG Crystal
    posted to no-tag by lpfernandes on 2007-05-29 14:47:34 as **
  • Insights into the molecular basis for fibroblast growth factor receptor autoinhibition and ligand-binding promiscuity.
    Proc Natl Acad Sci U S A, Vol. 101, No. 4. (27 January 2004), pp. 935-940.
    by SK Olsen, OA Ibrahimi, A Raucci, F Zhang, AV Eliseenkova, A Yayon, C Basilico, RJ Linhardt, J Schlessinger, M Mohammadi
    posted to no-tag by lpfernandes on 2007-05-26 00:50:49 as ** along with 1 person Alan
  • FGFR3IIIS: a novel soluble FGFR3 spliced variant that modulates growth is frequently expressed in tumour cells.
    Br J Cancer, Vol. 89, No. 7. (6 October 2003), pp. 1276-1284.
    by LM Sturla, AE Merrick, SA Burchill
    posted to no-tag by lpfernandes on 2007-05-26 00:49:50 as **
  • Novel Gain-of-function mutations of platelet glycoprotein Ibalpha by valine mutagenesis in the Cys209-Cys248 disulfide loop
    J. Biol. Chem. (2 June 2000), M909952199.
    by Jing-Fei Dong, Alicia J Schade, Gabriel M Romo, Robert K Andrews, Shan Gao, Larry V Mcintire, Jose A Lopez
    posted to no-tag by lpfernandes on 2007-05-26 00:49:04 as **
  • Structure of the glycoprotein Ib.IX complex from platelet membranes
    J. Biol. Chem., Vol. 263, No. 10. (5 April 1988), pp. 4882-4890.
    by Je Fox, Lp Aggerbeck, Mc Berndt
    posted to no-tag by lpfernandes on 2007-05-26 00:46:30 as **
  • Knockdown by shRNA identifies S249C mutant FGFR3 as a potential therapeutic target in bladder cancer
    Oncogene, Vol. aop, No. current.
    by DC Tomlinson, CD Hurst, MA Knowles
    posted to no-tag by lpfernandes on 2007-05-26 00:35:52 as **
  • Frequent activating mutations of FGFR3 in human bladder and cervix carcinomas.
    Nat Genet, Vol. 23, No. 1. (September 1999), pp. 18-20.
    by D Cappellen, C De Oliveira, D Ricol, S de Medina, J Bourdin, X Sastre-Garau, D Chopin, JP Thiery, F Radvanyi
    posted to no-tag by lpfernandes on 2007-05-26 00:35:14 as **
  • Proteins associated with diseases show enhanced sequence correlation between charged residues.
    Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2345-2354.
    by RI Dima, D Thirumalai
    posted to no-tag by lpfernandes on 2007-05-26 00:33:47 as **
  • Impact of the DeltaF508 Mutation in First Nucleotide-binding Domain of Human Cystic Fibrosis Transmembrane Conductance Regulator on Domain Folding and Structure
    J. Biol. Chem., Vol. 280, No. 2. (14 January 2005), pp. 1346-1353.
    by Hal A Lewis, Xun Zhao, Chi Wang, Michael J Sauder, Isabelle Rooney, Brian W Noland, Don Lorimer, Margaret C Kearins, Kris Conners, Brad Condon, Peter C Maloney, William B Guggino, John F Hunt, Spencer Emtage
    posted to no-tag by lpfernandes on 2007-05-26 00:29:56 as **
  • RILM: a web-based resource to aid comparative and functional analysis of the insulin and IGF-1 receptor family.
    Hum Mutat, Vol. 28, No. 7. (22 February 2007), pp. 660-668.
    by Acely Garza-Garcia, Dhaval S S Patel, David Gems, Paul C C Driscoll
    posted to no-tag by lpfernandes on 2007-05-26 00:23:32 as **
  • Mapping PDB chains to UniProtKB entries.
    Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4297-4301.
    by AC Martin
    posted to no-tag by lpfernandes on 2007-05-26 00:23:05 as ** along with 3 people saunders bicko grahamc
  • SNP@Domain: a web resource of single nucleotide polymorphisms (SNPs) within protein domain structures and sequences.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by A Han, HJ Kang, Y Cho, S Lee, YJ Kim, S Gong
    posted to no-tag by lpfernandes on 2007-05-26 00:22:29 as **
  • Prediction of deleterious human alleles.
    Hum Mol Genet, Vol. 10, No. 6. (15 March 2001), pp. 591-597.
    by S Sunyaev, V Ramensky, I Koch, W Lathe, AS Kondrashov, P Bork
    posted to no-tag by lpfernandes on 2007-05-26 00:21:18 as ** along with 4 people and 2 groups caporaso massivemayhem cat_worth adijr structural_bioinformatics biomedical-nlp
  • LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources
    Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2814-2820.
    by Rachel Karchin, Mark Diekhans, Libusha Kelly, Daryl J Thomas, Ursula Pieper, Narayanan Eswar, David Haussler, Andrej Sali
    posted to no-tag by lpfernandes on 2007-05-26 00:20:41 as ** along with 3 people and 3 groups mattjb massivemayhem cat_worth structural_bioinformatics ComplexAdaptiveSystems DSTO-CAS
  • A Human Protein-Protein Interaction Network: A Resource for Annotating the Proteome
    Cell, Vol. 122, No. 6. (23 September 2005), pp. 957-968.
    by Ulrich Stelzl, Uwe Worm, Maciej Lalowski, Christian Haenig, Felix H Brembeck, Heike Goehler, Martin Stroedicke, Martina Zenkner, Anke Schoenherr, Susanne Koeppen, Jan Timm, Sascha Mintzlaff, Claudia Abraham, Nicole Bock, Silvia Kietzmann, Astrid Goedde, Engin Toksoz, Anja Droege, Sylvia Krobitsch, Bernhard Korn, Walter Birchmeier, Hans Lehrach, Erich E Wanker
    posted to no-tag by lpfernandes on 2007-05-24 16:00:54 as **
  • Protein interaction networks from yeast to human.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 292-299.
    by P Bork, LJ Jensen, C von Mering, AK Ramani, I Lee, EM Marcotte
    posted to no-tag by lpfernandes on 2007-05-24 14:42:37 as ** along with 7 people kuhn koller grahamc cjeans selrac Evangelia larsjuhljensen
  • Systems Biology, Integrative Biology, Predictive Biology
    Cell, Vol. 121, No. 4. (20 May 2005), pp. 505-506.
    by Edison T Liu
    posted to no-tag by lpfernandes on 2007-05-24 14:40:47 as **
  • Systems Biology: Its Practice and Challenges
    Cell, Vol. 121, No. 4. (20 May 2005), pp. 511-513.
    by Alan Aderem
    posted to no-tag by lpfernandes on 2007-05-24 14:39:22 as **
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