In silico analysis of promoter regions from cold-induced genes in rice (Oryza sativa L.) and Arabidopsis thaliana reveals the importance of combinatorial control Export

@article{citeulike:4221449, abstract = {Motivation: Cold acclimation involves a number of different cellular processes that together increase the freezing tolerance of an organism. The DREB1/CBFs are transcription factors that are prominent in the regulation of cold responses in Arabidopsis thaliana, rice and many other crops. We investigated if the expression of DREB1/CBFs and co-expressed genes relies on combinatorial control by several transcription factors. Our results support this notion and indicate that methods for studying the regulation of complex cellular processes should include identification of combinations of motifs, in addition to searching for individual over-represented binding sites. 10.1093/bioinformatics/btp172}, author = {Lindlof, Angelica and Brautigam, Marcus and Chawade, Aakash and Olsson, Olof and Olsson, Bjorn}, citeulike-article-id = {4221449}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btp172}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/11/1345}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/19321735}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=19321735}, day = {25}, doi = {10.1093/bioinformatics/btp172}, journal = {Bioinformatics}, keywords = {arabidopsis, eucariotic\_transcription\_regulation, genetic\_regulatory\_networks, networks}, month = {March}, pages = {btp172+}, posted-at = {2009-05-15 09:44:57}, priority = {2}, title = {In silico analysis of promoter regions from cold-induced genes in rice (Oryza sativa L.) and Arabidopsis thaliana reveals the importance of combinatorial control}, url = {http://dx.doi.org/10.1093/bioinformatics/btp172}, year = {2009} }

TY - JOUR ID - citeulike:4221449 L3 - citeulike-article-id:4221449 N2 - Motivation: Cold acclimation involves a number of different cellular processes that together increase the freezing tolerance of an organism. The DREB1/CBFs are transcription factors that are prominent in the regulation of cold responses in Arabidopsis thaliana, rice and many other crops. We investigated if the expression of DREB1/CBFs and co-expressed genes relies on combinatorial control by several transcription factors. Our results support this notion and indicate that methods for studying the regulation of complex cellular processes should include identification of combinations of motifs, in addition to searching for individual over-represented binding sites. 10.1093/bioinformatics/btp172 JF - Bioinformatics TI - In silico analysis of promoter regions from cold-induced genes in rice (Oryza sativa L.) and Arabidopsis thaliana reveals the importance of combinatorial control SP - btp172 KW - arabidopsis KW - eucariotic_transcription_regulation KW - genetic_regulatory_networks KW - networks AU - Lindlof, Angelica AU - Brautigam, Marcus AU - Chawade, Aakash AU - Olsson, Olof AU - Olsson, Bjorn PY - 2009/03/25/ UR - http://dx.doi.org/10.1093/bioinformatics/btp172 ER -