lptolik's library 324 articles Export

Ordered by to_read.

	How to Get the Most out of Your Curation Effort [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000391. by Andrey Rzhetsky, Hagit Shatkay, W. John Wilbur posted to biocad text_mining by lptolik on 2009-06-14 16:03:27 as along with 16 people and 4 groups daveGerrard CorinYeats abhishek_tiwari daforerog klexa kiekyon badger_master sobolevnrm druvus martingerner cisevol AlexBateman VGreiff allysonlister fgibson dullhunk Orengo Group Journal Picks baker-group BergmanLab Journal picks
	Systematic identifiability testing for unambiguous mechanistic modeling - application to JAK-STAT, MAP kinase, and NF-kappaB signaling pathway models [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 50. by Tom Quaiser, Martin Monnigmann posted to kinetic_modelling model_checking modelling networks by lptolik on 2009-05-15 09:30:57 as along with 1 person mstumpf
	Bootstrap confidence intervals: when, which, what? A practical guide for medical statisticians [My Copy] Statistics in Medicine, Vol. 19, No. 9. (2000), pp. 1141-1164. by James Carpenter, John Bithell posted to data_analysis by lptolik on 2009-04-13 14:06:10 as along with 1 person austin987
	Mean squared error of prediction (MSEP) estimates for principal component regression (PCR) and partial least squares regression (PLSR) [My Copy] Journal of Chemometrics, Vol. 18, No. 9. (2004), pp. 422-429. by Bjørn-Helge Mevik, Henrik R. Cederkvist posted to data_analysis by lptolik on 2009-04-10 15:44:03 as
	Ensemble methods and partial least squares regression [My Copy] Journal of Chemometrics, Vol. 18, No. 11. (2004), pp. 498-507. by Bjørn-Helge Mevik, Vegard H. Segtnan, Tormod Næs posted to data_analysis by lptolik on 2009-04-10 15:41:32 as
	Reconstructing the ubiquitin network: cross-talk with other systems and identification of novel functions. [My Copy] Genome biology, Vol. 10, No. 3. (30 March 2009), R33. by T. M. Venancio, S. Balaji, L. M. Iyer, L. Aravind posted to modelling networks by lptolik on 2009-04-05 09:41:46 as along with 3 people venancio guhjy robfsouza
	Version control of pathway models using XML patches. [My Copy] BMC systems biology, Vol. 3, No. 1. (2009), 34. by Peter Saffrey, Richard Orton posted to biocad kinetic_modelling software by lptolik on 2009-03-23 09:05:45 as along with 4 people irenas neilswainston dswan allysonlister
	Adaptable data management for systems biology investigations. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 79. by John Boyle, Hector Rovira, Chris Cavnor, David Burdick, Sarah Killcoyne, Ilya Shmulevich posted to data_representation software by lptolik on 2009-03-13 11:12:20 as along with 10 people JeremyZucker daforerog allysonlister guhjy renatomilani fgibson sjcockell erexhepa VGreiff druvus
	Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays [My Copy] Genome Biology, Vol. 10 (11 February 2009), R17. by Samuel, Steve A. Kay posted to arabidopsis circadian_clock eucariotic_transcription_regulation genetic_regulatory_networks by lptolik on 2009-02-19 09:48:21 as along with 2 people JohnBallam natstreet
	GenomeGraphs: integrated genomic data visualization with R. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by Steffen Durinck, James Bullard, Paul T. Spellman, Sandrine Dudoit posted to genetic_regulatory_networks r_library software by lptolik on 2009-01-14 17:34:37 as along with 17 people and 1 group daforerog jmeppley klo psique rdiaz guhjy nuin thomaskelder pkonings natstreet polivares Zephyrus druvus barriot cisevol neils GeeSharpMinor BergmanLab
	Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. [My Copy] Cell, Vol. 126, No. 6. (22 September 2006), pp. 1189-1201. by X. Zhang, J. Yazaki, A. Sundaresan, et al.S. Cokus, S. W. Chan, H. Chen, I. R. Henderson, P. Shinn, M. Pellegrini, S. E. Jacobsen, J. R. Ecker posted to data eucariotic_transcription_regulation by lptolik on 2009-01-14 15:45:51 as along with 5 people and 1 group hroest suizifish kaarsinogen kengg tinahu Plantandetc
	Inductive logic: From data analysis to experimental design" in Bayesian Inference and Maximum Entropy Methods in Science and Engineering [My Copy] In Proceedings of the 21st International Workshop (2002), pp. 392-404. by Kevin H. Knuth posted to data_analysis by lptolik on 2009-01-13 11:46:06 as
	Microarray-based gene set analysis: a comparison of current methods [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 502. by Sarah Song, Michael Black posted to genetic_regulatory_networks networks by lptolik on 2009-01-08 14:18:57 as along with 25 people and 1 group giovenko dipenps holecm lwaldron jfr ptrobajo ekotelnikova zufar buyske guhjy heliopais fhalbrit balicea daforerog Zephyrus irinamohorianu dswan shikin nuin hersh006 behindtherabbit colinDotAIBN druvus barriot GeeSharpMinor Roswell Cancer Crosstalk
	Comparison of multivariate tests for genetic linkage. [My Copy] Human heredity, Vol. 51, No. 3. (2001), pp. 133-144. by C. Amos, M. de Andrade, D. Zhu posted to genetic_regulatory_networks modelling networks by lptolik on 2009-01-08 14:14:31 as
	Complete periodic synchronization in coupled systems [My Copy] Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 18, No. 4. (2008) by Wei Zou, Meng Zhan posted to modelling networks by lptolik on 2009-01-08 13:58:23 as
	Complete synchronization in coupled limit-cycle systems [My Copy] EPL (Europhysics Letters), Vol. 81, No. 1. (2008), 10006. by Wei Zou, Meng Zhan posted to modelling networks by lptolik on 2009-01-08 13:41:33 as
	Inferring connectivity of interacting phase oscillators [My Copy] Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 18, No. 4. (2008) by Dongchuan Yu, Luigi Fortuna, Fang Liu posted to data_analysis modelling networks by lptolik on 2009-01-08 13:30:34 as
	The effect of alternative permutation testing strategies on the performance of Multifactor Dimensionality Reduction [My Copy] BMC Research Notes, Vol. 1, No. 1. (2008) by Alison M. Reif posted to model_checking networks by lptolik on 2009-01-07 17:03:49 as along with 1 person rdiaz
	Provenance: The Bridge Between Experiments and Data [My Copy] Computing in Science & Engineering In Computing in Science & Engineering, Vol. 10, No. 3. (2008), pp. 38-46. by Simon Miles, Paul Groth, Ewa Deelman, Karan Vahi, Gaurang Mehta, Luc Moreau posted to taverna by lptolik on 2008-12-26 13:45:40 as along with 1 person alanrw
	A new systematic computational approach to predicting target genes of transcription factors [My Copy] Nucl. Acids Res. (18 June 2007), gkm454. by Xinbin Dai, Ji He, Xuechun Zhao posted to arabidopsis data_analysis eucariotic_transcription_regulation modelling by lptolik on 2008-12-26 13:27:40 as along with 3 people GustavoLacerda druvus cabbagezs
	A Novel Signaling Pathway Impact Analysis (SPIA) [My Copy] Bioinformatics (5 November 2008), btn577. by Adi L. Tarca, Sorin Draghici, Purvesh Khatri, et al.Sonia S. Hassan, Pooja Mittal, Jung-Sun Kim, Chong J. Kim, Juan P. Kusanovic, Roberto Romero posted to data_analysis eucariotic_transcription_regulation networks by lptolik on 2008-12-22 12:03:49 as along with 8 people and 1 group ipark-kaist bertelsen jfr heliopais AlexanderPico thomaskelder guhjy renatomilani ConklinLab
	Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature [My Copy] Bioinformatics (12 November 2008), btn583. by Jiansheng Wu, Hongde Liu, Xueye Duan, et al.Yan Ding, Hongtao Wu, Yunfei Bai, Xiao Sun posted to eucariotic_transcription_regulation prot_binding by lptolik on 2008-12-22 11:55:45 as along with 2 people marti hugowill
	Systematic identification of yeast cell cycle transcription factors using multiple data sources [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Wei S. Wu, Wen H. Li posted to dna eucariotic_transcription_regulation networks prot_binding by lptolik on 2008-12-17 13:15:49 as along with 1 person behindtherabbit
	Multi-label literature classification based on the Gene Ontology graph [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 525. by Bo Jin, Brian Muller, Chengxiang Zhai, Xinghua Lu posted to biocad by lptolik on 2008-12-17 13:10:29 as along with 5 people and 3 groups Effie dbk Zephyrus guhjy barriot NaCTeM Multilabel Classification mlkd
	Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 6. (18 March 2003), pp. 3351-3356. by Orly Alter, Patrick O. Brown, David Botstein posted to data_analysis eucariotic_transcription_regulation knowledge_capture by lptolik on 2008-12-14 17:35:03 as along with 3 people rdiaz opheliav wnpx
	The Data Playground: An Intuitive Workflow Specification Environment [My Copy] e-Science and Grid Computing, IEEE International Conference on In E-SCIENCE '07: Proceedings of the Third IEEE International Conference on e-Science and Grid Computing (2007), pp. 59-68. by Andrew Gibson, Matthew Gamble, Katy Wolstencroft, Tom Oinn, Carole Goble posted to taverna by lptolik on 2008-11-19 11:35:27 as along with 4 people fisherp vijyendra druvus alanrw
	Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Peter Li, Juan I. Castrillo, Giles Velarde, et al.Ingo Wassink, Stian Soiland-Reyes, Stuart Owen, David Withers, Tom Oinn, Matthew R. Pocock, Carole A. Goble, Stephen G. Oliver, Douglas B. Kell posted to taverna by lptolik on 2008-11-10 13:59:32 as along with 8 people pekrau fisherp zufar jfr druvus dullhunk GeeSharpMinor guhjy
	Mutant screen distinguishes between residues necessary for light-signal perception and signal transfer by phytochrome B. [My Copy] PLoS genetics, Vol. 4, No. 8. (2008) by Y. Oka, T. Matsushita, N. Mochizuki, P. H. Quail, A. Nagatani posted to arabidopsis phy by lptolik on 2008-11-07 22:39:06 as along with 1 person drmacgregor
	Truncated suffix trees and their application to data compression [My Copy] Theoretical Computer Science, Vol. 304, No. 1-3. (28 July 2003), pp. 87-101. by J. Na posted to data_representation by lptolik on 2008-11-05 16:24:25 as
	Efficient detection of unusual words. [My Copy] J Comput Biol, Vol. 7, No. 1-2. (r 2000), pp. 71-94. by A. Apostolico, M. E. Bock, S. Lonardi, X. Xu posted to data_representation dna by lptolik on 2008-11-05 16:05:37 as along with 3 people wowalz dquest suizan
	Design of simple synthetic RNA thermometers for temperature-controlled gene expression in Escherichia coli [My Copy] Nucl. Acids Res., Vol. 36, No. 19. (1 November 2008), e124. by Juliane Neupert, Daniel Karcher, Ralph Bock posted to eucariotic_transcription_regulation phys_props temperature_compensation by lptolik on 2008-11-05 11:36:10 as along with 1 person nixennacht
	Predicting transcription factor specificity with all-atom models. [My Copy] Nucleic acids research (1 October 2008) by Sahand Jamal J. Rahi, Peter Virnau, Leonid A A. Mirny, Mehran Kardar posted to eucariotic_transcription_regulation phys_props by lptolik on 2008-11-05 11:33:24 as along with 6 people Jporci chrn reyez maximilianh zwang aalibes
	A relation based measure of semantic similarity for Gene Ontology annotations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 468. by Brendan Sheehan, Aaron Quigley, Benoit Gaudin, Simon Dobson posted to data_representation networks ontology by lptolik on 2008-11-05 11:07:45 as along with 9 people and 1 group MarcoAlvarez stefanorb sgoetz sobolevnrm guhjy pengchy Keywan davidecellai phoenixzxl baker-group
	Dynamics of receptor and protein transducer homodimerisation [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Julio Vera, Thomas Millat, Walter Kolch, Olaf Wolkenhauer posted to kinetic_modelling phys_props by lptolik on 2008-11-05 11:06:22 as along with 1 person dintojose
	Sequence Space Coverage, Entropy of Genomes and the Potential to Detect Non-Human DNA in Human Samples [My Copy] BMC Genomics, Vol. 9 (30 October 2008), 509. by Zhandong Liu, Santosh S. Venkatesh, Carlo C. Maley posted to arabidopsis dna e_coli electrostatics by lptolik on 2008-11-05 11:01:19 as
	ALC: automated reduction of rule-based models [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Markus Koschorreck, Ernst D. Gilles posted to model_checking optimization_technique by lptolik on 2008-11-05 10:44:52 as along with 2 people guhjy GeeSharpMinor
	Information-based methods for predicting gene function from systematic gene knock-downs [My Copy] BMC Bioinformatics, Vol. 9 (29 October 2008), 463. by Matthew T. Weirauch, Christopher K. Wong, Alexandra B. Byrne, Joshua M. Stuart posted to eucariotic_transcription_regulation modelling networks by lptolik on 2008-11-05 10:32:44 as along with 1 person guhjy
	Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Raffaele Giancarlo, Davide Scaturro, Filippo Utro posted to model_checking networks by lptolik on 2008-11-05 10:31:20 as along with 6 people jfr imina kittipat nuin druvus isimpson
	Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (03 November 2008), 467. by Weijun Luo, Kurt Hankenson, Peter Woolf posted to eucariotic_transcription_regulation modelling networks by lptolik on 2008-11-05 10:00:23 as along with 8 people sotacam kemalpak msuarezdiez jfr pengchy druvus isimpson sjung
	Homology modelling of protein-protein complexes: a simple method and its possibilities and limitations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Guillaume Launay, Thomas Simonson posted to modelling phys_props by lptolik on 2008-10-28 14:16:37 as along with 1 person chad_davis
	BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Tim Hulsen, Jacob de Vlieg, Wynand Alkema posted to data_representation by lptolik on 2008-10-22 10:16:23 as along with 21 people and 2 groups n00c jfr lscarafia jmeppley hessec GustavoLacerda stajich dswan polivares egonw ptrobajo guhjy jameswasmuth msampson pengchy natstreet druvus barriot Zephyrus cisevol thulsen Mycology BergmanLab
	Prediction of TF target sites based on atomistic models of protein-DNA complexes [My Copy] BMC Bioinformatics, Vol. 9 (16 October 2008), 436. by Vladimir E. Angarica, Abel G. Perez, Ana T. Vasconcelos, Julio Collado-Vides, Bruno Contreras-Moreira posted to eucariotic_transcription_regulation phys_props by lptolik on 2008-10-22 10:15:30 as along with 2 people emptyhb aalibes
	OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Kieran O'Neill, Alexander Garcia, Anita Schwegmann, Rafael Jimenez, Dan Jacobson, Henning Hermjakob posted to no-tag by lptolik on 2008-10-22 10:13:00 as along with 7 people guhjy fgibson druvus pengchy dullhunk barriot paszkows
	Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data. [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Michael Gilchrist, Mikkel Christensen, Richard Harland, et al.Nicolas Pollet, James Smith, Naoto Ueno, Nancy Papalopulu posted to data_representation by lptolik on 2008-10-22 10:12:16 as along with 4 people and 1 group Keywan guhjy barriot cisevol BergmanLab
	A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana. [My Copy] Plant Cell Physiol, Vol. 44, No. 6. (June 2003), pp. 619-629. by T. Yamashino, A. Matsushika, T. Fujimori, et al.S. Sato, T. Kato, S. Tabata, T. Mizuno posted to arabidopsis light_sensing toc1 by lptolik on 2008-10-20 08:08:21 as along with 2 people and 1 group drmacgregor kengg Plantandetc
	Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome [My Copy] Science, Vol. 302, No. 5646. (31 October 2003), pp. 842-846. by Kayoko Yamada, Jun Lim, Joseph M. Dale, et al.Huaming Chen, Paul Shinn, Curtis J. Palm, Audrey M. Southwick, Hank C. Wu, Christopher Kim, Michelle Nguyen, Paul Pham, Rosa Cheuk, George Karlin-Newmann, Shirley X. Liu, Bao Lam, Hitomi Sakano, Troy Wu, Guixia Yu, Molly Miranda, Hong L. Quach, Matthew Tripp, Charlie H. Chang, Jeong M. Lee, Mitsue Toriumi, Marie M. Chan, Carolyn C. Tang, Courtney S. Onodera, Justine M. Deng, Kenji Akiyama, Yasser Ansari, Takahiro Arakawa, Jenny Banh, Fumika Banno, Leah Bowser, Shelise Brooks, Piero Carninci, Qimin Chao, Nathan Choy, Akiko Enju, Andrew D. Goldsmith, Mani Gurjal, Nancy F. Hansen, Yoshihide Hayashizaki, Chanda Johnson-Hopson, Vickie W. Hsuan, Kei Iida, Meagan Karnes, Shehnaz Khan, Eric Koesema, Junko Ishida, Paul X. Jiang, Ted Jones, Jun Kawai, Asako Kamiya, Cristina Meyers, Maiko Nakajima, Mari Narusaka, Motoaki Seki, Tetsuya Sakurai, Masakazu Satou, Racquel Tamse, Maria Vaysberg, Erika K. Wallender, Cecilia Wong, Yuki Yamamura, Shiaulou Yuan, Kazuo Shinozaki, Ronald W. Davis, Athanasios Theologis, Joseph R. Ecker posted to arabidopsis eucariotic_transcription_regulation by lptolik on 2008-10-19 13:50:27 as along with 4 people and 1 group ThomasDOtto sdinka kaspermunch xwbcn Bioinformatics
	Site-Specific Phosphorylation Profiling of Arabidopsis Proteins by Mass Spectrometry and Peptide Chip Analysis [My Copy] J. Proteome Res. (24 April 2008) by de La, Dorothea Anrather, Ilse Dohnal, et al.Elisabeth Roitinger, Edina Csaszar, Jos Joore, Joshua Buijnink, Alessandro Carreri, Celine Forzani, Zdravko J. Lorkovic, Andrea Barta, David Lecourieux, Andreas Verhounig, Claudia Jonak, Heribert Hirt posted to arabidopsis phosphoproteomic by lptolik on 2008-10-17 15:47:42 as along with 3 people neils cjhall brianb
	Compilation and Characterization of Arabiopsis thaliana Response Regulators Implicated in His-Asp Phosphorelay Signal Transduction [My Copy] Plant Cell Physiol., Vol. 40, No. 7. (1 January 1999), pp. 733-742. by Aya Imamura, Naoto Hanaki, Ayako Nakamura, et al.Tomomi Suzuki, Mitsutaka Taniguchi, Takatoshi Kiba, Chiharu Ueguchi, Tatsuo Sugiyama, Takeshi Mizuno posted to arabidopsis phosphoproteomic by lptolik on 2008-10-17 14:51:53 as
	His-Asp phosphorelay signaling: a communication avenue between plants and their environment [My Copy] Plant Molecular Biology, Vol. 42, No. 2. (1 January 2000), pp. 273-278. by Hitoshi Sakakibara, Mitsutaka Taniguchi, Tatsuo Sugiyama posted to arabidopsis signalling by lptolik on 2008-10-17 09:25:57 as
	Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database. [My Copy] Plant Cell, Vol. 16, No. 9. (September 2004), pp. 2394-2405. by T. S. Nühse, A. Stensballe, O. N. Jensen, S. C. Peck posted to arabidopsis phosphoproteomic by lptolik on 2008-10-17 08:44:31 as

Note: You may cite this page as: http://www.citeulike.org/user/lptolik/order/to_read

Result page: 1 2 3 4 5 6 7 Next

arabidopsis	84
eucariotic_transcription_regulation	47
networks	45
modelling	44
database	41
biocad	28
data_representation	27
data_analysis	26
light_sensing	23
circadian_clock	21
phys_props	21
model_checking	17
e_coli	13
genetic_regulatory_networks	13
phytochrome	13
software	12
graph_analysis	11
kinetic_modelling	10
phosphoproteomic	10
prot_binding	9
taverna	9
electrostatics	8
dna	7
optimization_technique	7
clock	6
r_library	6
data	5
phy	5
sbsi	5
text_mining	5
anom_behaviour_finding	4
cheminformatics	4
knowledge_capture	4
microarrays	4
review	4
blue_light	3
ca	3
clustering	3
protein_motif	3
signalling	3
temperature_compensation	3
cab2	2
cold_responce	2
lhy	2
metabolome	2
ontology	2
toc1	2
ccr2	1
cold_response	1
eucariotictranscriptioregulation	1
gr	1
image_analysis	1
parallel_computations	1
pharmacokinetic	1
pifs	1
pp5	1
proteomics	1
red_light	1
stochastic_simulation	1
t	1
visualisation	1
wiki_based_systems	1

lptolik's library 324 articles Export

lptolik's tags