lptolik's modelling [44 articles] Export

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	Systematic identifiability testing for unambiguous mechanistic modeling - application to JAK-STAT, MAP kinase, and NF-kappaB signaling pathway models [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 50. by Tom Quaiser, Martin Monnigmann posted to kinetic_modelling model_checking modelling networks by lptolik on 2009-05-15 09:30:57 as along with 1 person mstumpf
	On the functional diversity of dynamical behaviour in genetic and metabolic feedback systems [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 51. by Lan Nguyen, Don Kulasiri posted to kinetic_modelling model_checking modelling by lptolik on 2009-05-15 09:29:52 as
	Predicting the binding preference of transcription factors to individual DNA k-mers [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 1012-1018. by Trevis M. Alleyne, Lourdes Pena-Castillo, Gwenael Badis, et al.Shaheynoor Talukder, Michael F. Berger, Andrew R. Gehrke, Anthony A. Philippakis, Martha L. Bulyk, Quaid D. Morris, Timothy R. Hughes posted to eucariotic_transcription_regulation genetic_regulatory_networks modelling by lptolik on 2009-04-08 12:19:19 as along with 6 people and 1 group absterga TRHvidsten bais djkt nuin maximilianh BenosLab
	Reconstructing the ubiquitin network: cross-talk with other systems and identification of novel functions. [My Copy] Genome biology, Vol. 10, No. 3. (30 March 2009), R33. by T. M. Venancio, S. Balaji, L. M. Iyer, L. Aravind posted to modelling networks by lptolik on 2009-04-05 09:41:46 as along with 3 people venancio guhjy robfsouza
	(psi,p,q)-vulnerabilities: A unified approach to network robustness [My Copy] Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 19, No. 1. (2009), 013133. by Regino Criado, Javier Pello, Miguel Romance, Mar\ía V. Pérez posted to graph_analysis modelling networks by lptolik on 2009-04-02 13:26:13 as
	How to deal with large models[quest] [My Copy] Mol Syst Biol, Vol. 5 (20 January 2009) by William S. Hlavacek posted to model_checking modelling by lptolik on 2009-03-02 11:43:12 as along with 3 people and 1 group sobolevnrm agonzale brianb baker-group
	Differential Dependency Network Analysis to Identify Condition-Specific Topological Changes in Biological Networks [My Copy] Bioinformatics (26 December 2008), btn660. by Bai Zhang, Huai Li, Rebecca B. Riggins, et al.Ming Zhan, Jianhua Xuan, Zhen Zhang, Eric P. Hoffman, Robert Clarke, Yue Wang posted to modelling networks by lptolik on 2009-02-18 12:48:38 as along with 7 people southo bertelsen mstumpf imina dolchan grahamc roys
	A divide-and-conquer approach to analyze underdetermined biochemical models [My Copy] Bioinformatics, Vol. 25, No. 4. (15 February 2009), pp. 519-525. by Oliver Kotte, Matthias Heinemann posted to model_checking modelling by lptolik on 2009-02-18 12:42:02 as along with 2 people abhishek_tiwari guhjy
	RMBNToolbox: random models for biochemical networks [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007), 22. by Tommi Aho, Olli P. Smolander, Jari Niemi, Olli Y. Harja posted to modelling networks software by lptolik on 2009-01-20 19:40:58 as along with 2 people sairariz GeeSharpMinor
	Comparison of multivariate tests for genetic linkage. [My Copy] Human heredity, Vol. 51, No. 3. (2001), pp. 133-144. by C. Amos, M. de Andrade, D. Zhu posted to genetic_regulatory_networks modelling networks by lptolik on 2009-01-08 14:14:31 as
	Complete periodic synchronization in coupled systems [My Copy] Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 18, No. 4. (2008) by Wei Zou, Meng Zhan posted to modelling networks by lptolik on 2009-01-08 13:58:23 as
	Complete synchronization in coupled limit-cycle systems [My Copy] EPL (Europhysics Letters), Vol. 81, No. 1. (2008), 10006. by Wei Zou, Meng Zhan posted to modelling networks by lptolik on 2009-01-08 13:41:33 as
	Inferring connectivity of interacting phase oscillators [My Copy] Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 18, No. 4. (2008) by Dongchuan Yu, Luigi Fortuna, Fang Liu posted to data_analysis modelling networks by lptolik on 2009-01-08 13:30:34 as
	Signal duration and the time scale dependence of signal integration in biochemical pathways [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Jason Locasale posted to modelling by lptolik on 2009-01-08 13:26:54 as
	Predicting DNA recognition by Cys2His2 zinc finger proteins. [My Copy] Bioinformatics (Oxford, England) (13 November 2008) by Anton V V. Persikov, Robert Osada, Mona Singh posted to modelling phys_props prot_binding by lptolik on 2009-01-08 10:52:43 as along with 5 people and 1 group maximilianh wilbur hugowill kgutwin aalibes KeatingJClub
	Dynamical modeling of the cholesterol regulatory pathway with Boolean networks [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Gwenael Kervizic, Laurent Corcos posted to modelling networks by lptolik on 2009-01-07 17:22:16 as along with 1 person behindtherabbit
	WGCNA: an R package for weighted correlation network analysis. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by P. Langfelder, S. Horvath posted to genetic_regulatory_networks microarrays modelling r_library by lptolik on 2009-01-07 16:59:18 as along with 14 people and 2 groups daforerog sficklin lwaldron jfr ekotelnikova slv23 rdiaz guhjy natstreet druvus cswinburne jmeppley irinamohorianu pengchy Bioinformatics Bioinformatics - CRUK
	Structural Identification of Piecewise-Linear Models of Genetic Regulatory Networks [My Copy] Journal of Computational Biology, Vol. 15, No. 10. (2008), pp. 1365-1380. by Riccardo Porreca, Samuel Drulhe, Hidde de Jong, Giancarlo F. Trecate posted to genetic_regulatory_networks modelling by lptolik on 2009-01-07 16:54:04 as
	Boolean Network Approach to Negative Feedback Loops of the p53 Pathways: Synchronized Dynamics and Stochastic Limit Cycles [My Copy] Journal of Computational Biology, Vol. 16, No. 1. (2009), pp. 119-132. by Hao Ge, Min Qian posted to modelling networks by lptolik on 2009-01-07 14:46:09 as
	A new systematic computational approach to predicting target genes of transcription factors [My Copy] Nucl. Acids Res. (18 June 2007), gkm454. by Xinbin Dai, Ji He, Xuechun Zhao posted to arabidopsis data_analysis eucariotic_transcription_regulation modelling by lptolik on 2008-12-26 13:27:40 as along with 3 people GustavoLacerda druvus cabbagezs
	Fast Algorithms for Computing Sequence Distances by Exhaustive Substring Composition [My Copy] Algorithms for Molecular Biology, Vol. 3 (28 October 2008), 13. by Alberto Apostolico, Olgert Denas posted to data_representation modelling by lptolik on 2008-11-05 11:28:59 as along with 4 people magusina treangen kittipat nuin
	Heuristic Approach to Sparse Approximation of Gene Regulatory Networks [My Copy] Journal of Computational Biology, Vol. 15, No. 9. (2008), pp. 1173-1186. by M. Andrecut, S. Huang, S. A. Kauffman posted to modelling networks by lptolik on 2008-11-05 11:09:32 as along with 2 people and 1 group balicea ggallone Jarman Lab
	Genetic noise control via protein oligomerization [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Cheol M. Ghim, Eivind Almaas posted to model_checking modelling by lptolik on 2008-11-05 10:57:32 as along with 1 person lanknguyen
	An in silico method for detecting overlapping functional modules from composite biological networks [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Ioannis Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos posted to modelling networks by lptolik on 2008-11-05 10:54:47 as along with 7 people dolchan jfr diamantis imina saket renatomilani jonesn
	Neutral network sizes of biological RNA molecules can be computed and are not atypically small [My Copy] BMC Bioinformatics, Vol. 9 (30 October 2008), 464. by Thomas Jorg, Olivier C. Martin, Andreas Wagner posted to modelling networks by lptolik on 2008-11-05 10:34:30 as along with 2 people coela nuin
	Information-based methods for predicting gene function from systematic gene knock-downs [My Copy] BMC Bioinformatics, Vol. 9 (29 October 2008), 463. by Matthew T. Weirauch, Christopher K. Wong, Alexandra B. Byrne, Joshua M. Stuart posted to eucariotic_transcription_regulation modelling networks by lptolik on 2008-11-05 10:32:44 as along with 1 person guhjy
	minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 461. by Patrick Meyer, Frederic Lafitte, Gianluca Bontempi posted to eucariotic_transcription_regulation modelling networks by lptolik on 2008-11-05 10:28:08 as along with 9 people sotacam jfr pengchy dswan guhjy renatomilani phoenixzxl druvus natstreet
	Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (03 November 2008), 467. by Weijun Luo, Kurt Hankenson, Peter Woolf posted to eucariotic_transcription_regulation modelling networks by lptolik on 2008-11-05 10:00:23 as along with 8 people sotacam kemalpak msuarezdiez jfr pengchy druvus isimpson sjung
	Homology modelling of protein-protein complexes: a simple method and its possibilities and limitations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Guillaume Launay, Thomas Simonson posted to modelling phys_props by lptolik on 2008-10-28 14:16:37 as along with 1 person chad_davis
	Why metabolic systems are rarely chaotic [My Copy] Biosystems, Vol. 94, No. 1-2. (October 2008), pp. 145-152. by T. Oldescheper posted to model_checking modelling by lptolik on 2008-10-24 16:08:33 as
	The manipulation of calcium oscillations by harnessing self-organisation [My Copy] Biosystems, Vol. 94, No. 1-2. (October 2008), pp. 153-163. by C. Santini, A. Tyrrell posted to model_checking modelling by lptolik on 2008-10-24 15:47:23 as
	Origin of structural difference in metabolic networks with respect to temperature [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Kazuhiro Takemoto, Tatsuya Akutsu posted to metabolome modelling networks by lptolik on 2008-09-24 08:43:47 as
	Evaluation of different biological data and computational classification methods for use in protein interaction prediction [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 3. (2006), pp. 490-500. by Yanjun Qi, Ziv Bar-Joseph, Judith Klein-Seetharaman posted to modelling networks by lptolik on 2008-09-17 10:26:17 as along with 5 people and 1 group huasha penpen926 tmmurali lfriedl balajis kdl
	Network legos: building blocks of cellular wiring diagrams. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 7. (September 2008), pp. 829-844. by T. M. Murali, C. G. Rivera posted to modelling networks by lptolik on 2008-09-06 17:59:18 as along with 7 people bertelsen druvus guhjy jfr sjcockell tmmurali RamuAnandakrishnan
	FERN - a Java framework for stochastic simulation and evaluation of reaction networks [My Copy] BMC Bioinformatics, Vol. 9 (29 August 2008), 356. by Florian Erhard, Caroline C. Friedel, Ralf Zimmer posted to modelling sbsi stochastic_simulation by lptolik on 2008-09-03 05:03:31 as along with 4 people guhjy trevinor reyez grahamc
	Scatter search for chemical and bio-process optimization [My Copy] Journal of Global Optimization, Vol. 37, No. 3. (March 2007), pp. 481-503. by Egea, Jose, Rodriguez-Fernandez, et al. Maria, Banga, Julio, Marti, Rafael posted to modelling optimization_technique sbsi by lptolik on 2008-08-25 11:29:27 as
	Can single knockouts accurately single out gene functions? [My Copy] BMC systems biology, Vol. 2, No. 1. (2008) by David Deutscher, Isaac Meilijson, Stefan Schuster, Eytan Ruppin posted to modelling by lptolik on 2008-08-02 21:19:36 as along with 5 people michaelbarton guhjy natstreet seemu jiny
	Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms [My Copy] Journal of Computational Biology, Vol. 0, No. 0. (0), pp. 1-18. by Yufeng Wu posted to modelling by lptolik on 2008-07-31 12:50:27 as along with 1 person guhjy
	Modeling cellular deformations using the level set formalism [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Liu Yang, Janet Effler, Brett Kutscher, Sarah Sullivan, Douglas Robinson, Pablo Iglesias posted to modelling phys_props by lptolik on 2008-07-27 13:52:27 as along with 1 person jporternj
	Finding motifs using random projections [My Copy] In RECOMB '01: Proceedings of the fifth annual international conference on Computational biology (2001), pp. 69-76. by Jeremy Buhler, Martin Tompa posted to anom_behaviour_finding data_representation modelling by lptolik on 2008-07-22 18:08:19 as along with 2 people nedwards RamuAnandakrishnan
	Locally adaptive dimensionality reduction for indexing large time series databases [My Copy] SIGMOD Rec., Vol. 30, No. 2. (June 2001), pp. 151-162. by Eamonn Keogh, Kaushik Chakrabarti, Michael Pazzani, Sharad Mehrotra posted to data_representation modelling by lptolik on 2008-07-21 23:49:46 as
	Unraveling Protein Networks with Power Graph Analysis [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108. by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder posted to data_representation modelling by lptolik on 2008-07-21 15:39:37 as along with 24 people and 2 groups colmryan carlk saket diamantis yyby jfr jiny aramesh2 AbnerCYH jmuhlich MatthiasReimann royerloic Ema kengg roys reyez tmmurali nuin Borelli askrajiv renatomilani stajich sebk rsantana Mycology OPIG
	A stitch in time: Efficient computation of genomic DNA melting bubbles [My Copy] Algorithms for Molecular Biology, Vol. 3, No. 1. (2008) by Eivind Tostesen posted to dna modelling phys_props by lptolik on 2008-07-18 10:06:16 as along with 1 person operon
	Complexity reduction of biochemical rate expressions [My Copy] Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 848-854. by Schmidt, Henning, Madsen, et al.F. Mads, A. Dan, Sune, Cedersund, Gunnar posted to modelling sbsi by lptolik on 2008-06-23 19:26:10 as

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arabidopsis	84
eucariotic_transcription_regulation	47
networks	45
modelling	44
database	41
biocad	28
data_representation	27
data_analysis	26
light_sensing	23
circadian_clock	21
phys_props	21
model_checking	17
e_coli	13
genetic_regulatory_networks	13
phytochrome	13
software	12
graph_analysis	11
kinetic_modelling	10
phosphoproteomic	10
prot_binding	9
taverna	9
electrostatics	8
dna	7
optimization_technique	7
clock	6
r_library	6
data	5
phy	5
sbsi	5
text_mining	5
anom_behaviour_finding	4
cheminformatics	4
knowledge_capture	4
microarrays	4
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blue_light	3
ca	3
clustering	3
protein_motif	3
signalling	3
temperature_compensation	3
cab2	2
cold_responce	2
lhy	2
metabolome	2
ontology	2
toc1	2
ccr2	1
cold_response	1
eucariotictranscriptioregulation	1
gr	1
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parallel_computations	1
pharmacokinetic	1
pifs	1
pp5	1
proteomics	1
red_light	1
stochastic_simulation	1
t	1
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wiki_based_systems	1

lptolik's modelling [44 articles] Export

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