lptolik's networks [45 articles] Export

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	In silico analysis of promoter regions from cold-induced genes in rice (Oryza sativa L.) and Arabidopsis thaliana reveals the importance of combinatorial control [My Copy] Bioinformatics (25 March 2009), btp172. by Angelica Lindlof, Marcus Brautigam, Aakash Chawade, Olof Olsson, Bjorn Olsson posted to arabidopsis eucariotic_transcription_regulation genetic_regulatory_networks networks by lptolik on 2009-05-15 09:44:57 as along with 1 person druvus
	Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 49. by Tom Michoel, Riet De Smet, Anagha Joshi, Yves Van de Peer, Kathleen Marchal posted to data_analysis genetic_regulatory_networks networks by lptolik on 2009-05-15 09:40:58 as along with 2 people ptrobajo TRHvidsten
	Systematic identifiability testing for unambiguous mechanistic modeling - application to JAK-STAT, MAP kinase, and NF-kappaB signaling pathway models [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 50. by Tom Quaiser, Martin Monnigmann posted to kinetic_modelling model_checking modelling networks by lptolik on 2009-05-15 09:30:57 as along with 1 person mstumpf
	Reconstructing the ubiquitin network: cross-talk with other systems and identification of novel functions. [My Copy] Genome biology, Vol. 10, No. 3. (30 March 2009), R33. by T. M. Venancio, S. Balaji, L. M. Iyer, L. Aravind posted to modelling networks by lptolik on 2009-04-05 09:41:46 as along with 3 people venancio guhjy robfsouza
	(psi,p,q)-vulnerabilities: A unified approach to network robustness [My Copy] Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 19, No. 1. (2009), 013133. by Regino Criado, Javier Pello, Miguel Romance, Mar\ía V. Pérez posted to graph_analysis modelling networks by lptolik on 2009-04-02 13:26:13 as
	BioCichlid: central dogma-based 3D visualization system of time-course microarray data on a hierarchical biological network [My Copy] Bioinformatics, Vol. 25, No. 4. (15 February 2009), pp. 543-544. by Ryosuke R. Ishiwata, Masaki S. Morioka, Soichi Ogishima, Hiroshi Tanaka posted to networks visualisation by lptolik on 2009-02-18 12:51:40 as along with 4 people and 1 group thomaskelder dswan renatomilani dolchan Bioinformatics
	Differential Dependency Network Analysis to Identify Condition-Specific Topological Changes in Biological Networks [My Copy] Bioinformatics (26 December 2008), btn660. by Bai Zhang, Huai Li, Rebecca B. Riggins, et al.Ming Zhan, Jianhua Xuan, Zhen Zhang, Eric P. Hoffman, Robert Clarke, Yue Wang posted to modelling networks by lptolik on 2009-02-18 12:48:38 as along with 7 people southo bertelsen mstumpf imina dolchan grahamc roys
	RMBNToolbox: random models for biochemical networks [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007), 22. by Tommi Aho, Olli P. Smolander, Jari Niemi, Olli Y. Harja posted to modelling networks software by lptolik on 2009-01-20 19:40:58 as along with 2 people sairariz GeeSharpMinor
	Microarray-based gene set analysis: a comparison of current methods [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 502. by Sarah Song, Michael Black posted to genetic_regulatory_networks networks by lptolik on 2009-01-08 14:18:57 as along with 25 people and 1 group giovenko dipenps holecm lwaldron jfr ptrobajo ekotelnikova zufar buyske guhjy heliopais fhalbrit balicea daforerog Zephyrus irinamohorianu dswan shikin nuin hersh006 behindtherabbit colinDotAIBN druvus barriot GeeSharpMinor Roswell Cancer Crosstalk
	Comparison of multivariate tests for genetic linkage. [My Copy] Human heredity, Vol. 51, No. 3. (2001), pp. 133-144. by C. Amos, M. de Andrade, D. Zhu posted to genetic_regulatory_networks modelling networks by lptolik on 2009-01-08 14:14:31 as
	Complete periodic synchronization in coupled systems [My Copy] Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 18, No. 4. (2008) by Wei Zou, Meng Zhan posted to modelling networks by lptolik on 2009-01-08 13:58:23 as
	Complete synchronization in coupled limit-cycle systems [My Copy] EPL (Europhysics Letters), Vol. 81, No. 1. (2008), 10006. by Wei Zou, Meng Zhan posted to modelling networks by lptolik on 2009-01-08 13:41:33 as
	Inferring connectivity of interacting phase oscillators [My Copy] Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 18, No. 4. (2008) by Dongchuan Yu, Luigi Fortuna, Fang Liu posted to data_analysis modelling networks by lptolik on 2009-01-08 13:30:34 as
	Integrating and Annotating the Interactome using the MiMI plugin for Cytoscape. [My Copy] Bioinformatics (Oxford, England) (23 September 2008) by Jing Gao, Alex S S. Ade, V Glenn G. Tarcea, et al.Terry E E. Weymouth, Barbara R R. Mirel, H V V. Jagadish, David J J. States posted to networks software by lptolik on 2009-01-08 13:02:31 as along with 4 people and 1 group jfr druvus dswan guhjy Bioinformatics
	Probing genetic overlap among complex human phenotypes [My Copy] PNAS (3 July 2007), 0704820104. by Andrey Rzhetsky, David Wajngurt, Naeun Park, Tian Zheng posted to biocad networks by lptolik on 2009-01-08 11:13:17 as along with 8 people and 3 groups daforerog jbsaltz klo brant balicea dchughes maralena guhjy EisenLab G4ID Genetics-of-Gambling
	Dynamical modeling of the cholesterol regulatory pathway with Boolean networks [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Gwenael Kervizic, Laurent Corcos posted to modelling networks by lptolik on 2009-01-07 17:22:16 as along with 1 person behindtherabbit
	The effect of alternative permutation testing strategies on the performance of Multifactor Dimensionality Reduction [My Copy] BMC Research Notes, Vol. 1, No. 1. (2008) by Alison M. Reif posted to model_checking networks by lptolik on 2009-01-07 17:03:49 as along with 1 person rdiaz
	Boolean Network Approach to Negative Feedback Loops of the p53 Pathways: Synchronized Dynamics and Stochastic Limit Cycles [My Copy] Journal of Computational Biology, Vol. 16, No. 1. (2009), pp. 119-132. by Hao Ge, Min Qian posted to modelling networks by lptolik on 2009-01-07 14:46:09 as
	A Novel Signaling Pathway Impact Analysis (SPIA) [My Copy] Bioinformatics (5 November 2008), btn577. by Adi L. Tarca, Sorin Draghici, Purvesh Khatri, et al.Sonia S. Hassan, Pooja Mittal, Jung-Sun Kim, Chong J. Kim, Juan P. Kusanovic, Roberto Romero posted to data_analysis eucariotic_transcription_regulation networks by lptolik on 2008-12-22 12:03:49 as along with 8 people and 1 group ipark-kaist bertelsen jfr heliopais AlexanderPico thomaskelder guhjy renatomilani ConklinLab
	Systematic identification of yeast cell cycle transcription factors using multiple data sources [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Wei S. Wu, Wen H. Li posted to dna eucariotic_transcription_regulation networks prot_binding by lptolik on 2008-12-17 13:15:49 as along with 1 person behindtherabbit
	Systematic interpretation of genetic interactions using protein networks [My Copy] Nat Biotech, Vol. 23, No. 5. (05 May 2005), pp. 561-566. by Ryan Kelley, Trey Ideker posted to data_analysis graph_analysis networks by lptolik on 2008-12-02 11:50:15 as along with 21 people and 2 groups colmryan nzm dakelley chasmand ajbattle mtaschuk benjaminsb nedwards okarsligil tuck balajis wnpx nirfriedman nickluscombe mmt koller massivemayhem patrycjam patrycja_missiuro mingzhi carlk Bioinformatics EBI-regulation
	Assessing experimentally derived interactions in a small world. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 8. (15 April 2003), pp. 4372-4376. by D. S. Goldberg, F. P. Roth posted to data_analysis graph_analysis networks by lptolik on 2008-12-02 11:47:33 as along with 8 people dragonrez shivaram bluto grahamc iris_2001 jmattax carlk ksiek
	Protein interactions: two methods for assessment of the reliability of high throughput observations. [My Copy] Molecular & cellular proteomics : MCP, Vol. 1, No. 5. (May 2002), pp. 349-356. by Charlotte M. Deane, Łukasz Salwiński, Ioannis Xenarios, David Eisenberg posted to data_analysis graph_analysis networks by lptolik on 2008-12-02 11:42:08 as along with 16 people and 1 group chica anf lawraga jimineep zdai tmmurali lfriedl bluto henschel ruvido iris_2001 shikin cdeane Pao-Yang ras chasmand kdl
	Protein interaction verification and functional annotation by integrated analysis of genome-scale data. [My Copy] Molecular cell, Vol. 9, No. 5. (May 2002), pp. 1133-1143. by P. Kemmeren, N. L. van Berkum, J. Vilo, et al.T. Bijma, R. Donders, A. Brazma, F. C. Holstege posted to data_analysis graph_analysis networks by lptolik on 2008-12-02 11:37:57 as
	Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. [My Copy] Nature genetics, Vol. 29, No. 4. (December 2001), pp. 482-486. by H. Ge, Z. Liu, G. M. Church, M. Vidal posted to data_analysis graph_analysis networks by lptolik on 2008-12-02 11:30:53 as along with 12 people and 1 group Robinder BioGeek lfriedl wnpx mmt gespim bluto ruvido grahamc kintoki roys paolomarcatili kdl
	The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles. [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Pawel Durek, Dirk Walther posted to biocad data_analysis graph_analysis networks by lptolik on 2008-12-02 08:41:46 as along with 2 people kentz renatomilani
	The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks [My Copy] BMC Bioinformatics, Vol. 9 (02 May 2008), 227. by Anatolij P. Potapov, Bjorn Goemann, Edgar Wingender posted to graph_analysis networks by lptolik on 2008-11-20 14:49:49 as along with 6 people kshameer jfr jiny bootsy shigepong joaocarrico
	Heuristic Approach to Sparse Approximation of Gene Regulatory Networks [My Copy] Journal of Computational Biology, Vol. 15, No. 9. (2008), pp. 1173-1186. by M. Andrecut, S. Huang, S. A. Kauffman posted to modelling networks by lptolik on 2008-11-05 11:09:32 as along with 2 people and 1 group balicea ggallone Jarman Lab
	A relation based measure of semantic similarity for Gene Ontology annotations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 468. by Brendan Sheehan, Aaron Quigley, Benoit Gaudin, Simon Dobson posted to data_representation networks ontology by lptolik on 2008-11-05 11:07:45 as along with 9 people and 1 group MarcoAlvarez stefanorb sgoetz sobolevnrm guhjy pengchy Keywan davidecellai phoenixzxl baker-group
	An in silico method for detecting overlapping functional modules from composite biological networks [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Ioannis Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos posted to modelling networks by lptolik on 2008-11-05 10:54:47 as along with 7 people dolchan jfr diamantis imina saket renatomilani jonesn
	Neutral network sizes of biological RNA molecules can be computed and are not atypically small [My Copy] BMC Bioinformatics, Vol. 9 (30 October 2008), 464. by Thomas Jorg, Olivier C. Martin, Andreas Wagner posted to modelling networks by lptolik on 2008-11-05 10:34:30 as along with 2 people coela nuin
	Information-based methods for predicting gene function from systematic gene knock-downs [My Copy] BMC Bioinformatics, Vol. 9 (29 October 2008), 463. by Matthew T. Weirauch, Christopher K. Wong, Alexandra B. Byrne, Joshua M. Stuart posted to eucariotic_transcription_regulation modelling networks by lptolik on 2008-11-05 10:32:44 as along with 1 person guhjy
	Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Raffaele Giancarlo, Davide Scaturro, Filippo Utro posted to model_checking networks by lptolik on 2008-11-05 10:31:20 as along with 6 people jfr imina kittipat nuin druvus isimpson
	minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 461. by Patrick Meyer, Frederic Lafitte, Gianluca Bontempi posted to eucariotic_transcription_regulation modelling networks by lptolik on 2008-11-05 10:28:08 as along with 9 people sotacam jfr pengchy dswan guhjy renatomilani phoenixzxl druvus natstreet
	Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (03 November 2008), 467. by Weijun Luo, Kurt Hankenson, Peter Woolf posted to eucariotic_transcription_regulation modelling networks by lptolik on 2008-11-05 10:00:23 as along with 8 people sotacam kemalpak msuarezdiez jfr pengchy druvus isimpson sjung
	Phosphorylation Networks Regulating JNK Activity in Diverse Genetic Backgrounds [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 453-456. by Chris Bakal, Rune Linding, Flora Llense, et al.Elleard Heffern, Enrique Martin-Blanco, Tony Pawson, Norbert Perrimon posted to networks phosphoproteomic by lptolik on 2008-10-30 11:35:13 as along with 5 people roys renatomilani zwang marck neils
	Assessment of protein set coherence using functional annotations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Monica Chagoyen, Jose Carazo, Alberto P. Montano posted to knowledge_capture model_checking networks by lptolik on 2008-10-22 10:09:37 as along with 8 people sgoetz taguchi imina Keywan druvus grahamc barriot GeeSharpMinor
	Phytochrome-regulated Gene Expression [My Copy] Journal of Integrative Plant Biology, Vol. 49, No. 1. (January 2007), pp. 11-20. by Quail, H. Peter posted to arabidopsis light_sensing networks by lptolik on 2008-10-21 17:59:34 as
	Employing conservation of co-expression to improve functional inference [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Carsten Daub, Erik Sonnhammer posted to biocad knowledge_capture networks by lptolik on 2008-09-24 09:09:01 as along with 6 people druvus ptrobajo pengchy natstreet klo barriot
	Origin of structural difference in metabolic networks with respect to temperature [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Kazuhiro Takemoto, Tatsuya Akutsu posted to metabolome modelling networks by lptolik on 2008-09-24 08:43:47 as
	BioPP: A Tool for Web-publication of Biological Networks [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Ganesh Viswanathan, German Nudelman, Sonali Patil, Stuart Sealfon posted to networks by lptolik on 2008-09-22 19:01:37 as along with 3 people and 1 group yas guhjy thomaskelder T_lab
	Evaluation of different biological data and computational classification methods for use in protein interaction prediction [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 3. (2006), pp. 490-500. by Yanjun Qi, Ziv Bar-Joseph, Judith Klein-Seetharaman posted to modelling networks by lptolik on 2008-09-17 10:26:17 as along with 5 people and 1 group huasha penpen926 tmmurali lfriedl balajis kdl
	Network legos: building blocks of cellular wiring diagrams. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 7. (September 2008), pp. 829-844. by T. M. Murali, C. G. Rivera posted to modelling networks by lptolik on 2008-09-06 17:59:18 as along with 7 people bertelsen druvus guhjy jfr sjcockell tmmurali RamuAnandakrishnan
	Light-regulated transcriptional networks in higher plants [My Copy] Nature Reviews Genetics, Vol. 8, No. 3., pp. 217-230. by Yuling Jiao, On S. Lau, Xing W. Deng posted to arabidopsis light_sensing networks by lptolik on 2008-08-28 15:58:17 as along with 3 people mojopin85 dandaman echinotrix
	On the origin of distribution patterns of motifs in biological networks. [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Arun Konagurthu, Arthur Lesk posted to graph_analysis networks by lptolik on 2008-08-17 15:04:02 as along with 4 people jaspervoskuilen tomhebbron AbnerCYH barriot

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arabidopsis	84
eucariotic_transcription_regulation	47
networks	45
modelling	44
database	41
biocad	28
data_representation	27
data_analysis	26
light_sensing	23
circadian_clock	21
phys_props	21
model_checking	17
e_coli	13
genetic_regulatory_networks	13
phytochrome	13
software	12
graph_analysis	11
kinetic_modelling	10
phosphoproteomic	10
prot_binding	9
taverna	9
electrostatics	8
dna	7
optimization_technique	7
clock	6
r_library	6
data	5
phy	5
sbsi	5
text_mining	5
anom_behaviour_finding	4
cheminformatics	4
knowledge_capture	4
microarrays	4
review	4
blue_light	3
ca	3
clustering	3
protein_motif	3
signalling	3
temperature_compensation	3
cab2	2
cold_responce	2
lhy	2
metabolome	2
ontology	2
toc1	2
ccr2	1
cold_response	1
eucariotictranscriptioregulation	1
gr	1
image_analysis	1
parallel_computations	1
pharmacokinetic	1
pifs	1
pp5	1
proteomics	1
red_light	1
stochastic_simulation	1
t	1
visualisation	1
wiki_based_systems	1

lptolik's networks [45 articles] Export

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