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lukaswindhager's library [65 articles]

Recent papers added to lukaswindhager's library.
  • Stochasticity and Cell Fate
    Science, Vol. 320, No. 5872. (4 April 2008), pp. 65-68.
    by Richard Losick, Claude Desplan
    posted to switches review by lukaswindhager on 2008-10-07 08:32:39 as **** along with 5 people and 1 group balabu margaritis paulschlesinger davidlott josedavid GEB
  • Systems biology by the rules: hybrid intelligent systems for pathway modeling and discovery.
    BMC Syst Biol, Vol. 1 (2007)
    by WJ Bosl
    posted to fuzzylogic by lukaswindhager on 2008-09-08 14:55:38 as ** along with 3 people and 2 groups wnpx carmaus fmenolascina dIEMoSIRIS MoSi-Rostock
  • Dynamic simulation of regulatory networks using SQUAD
    BMC Bioinformatics, Vol. 8 (26 November 2007), 462.
    by Alessandro Di Cara, Abhishek Garg, Giovanni De Micheli, Ioannis Xenarios, Luis Mendoza
    posted to modelling systemsbiology by lukaswindhager on 2008-08-26 13:55:11 as ***** along with 1 person waszak
  • Mining metabolic networks for optimal drug targets.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 291-302.
    by P Sridhar, B Song, T Kahveci, S Ranka
    posted to drug_targets systemsbiology by lukaswindhager on 2008-07-29 10:05:28 as **
  • A genetic regulatory network for Xenopus mesendoderm formation.
    Developmental biology, Vol. 271, No. 2. (15 July 2004), pp. 467-478.
    by M Loose, R Patient
    posted to development mesc_project model xenopus by lukaswindhager on 2008-07-25 12:38:19 as **
  • A glimpse into the molecular entrails of endoderm formation.
    Genes & development, Vol. 16, No. 8. (15 April 2002), pp. 893-907.
    by DY Stainier
    posted to endoderm_formation mesc_project by lukaswindhager on 2008-07-25 08:22:08 as ** along with 1 person and 1 group tharris C. elegans / WormBase
  • Gastrula organiser and embryonic patterning in the mouse.
    Seminars in cell & developmental biology, Vol. 15, No. 5. (October 2004), pp. 543-554.
    by L Robb, PP Tam
    posted to early_dev_stage mesc_project pattern_formation by lukaswindhager on 2008-07-25 08:21:39 as **
  • Overexpression of Nodal promotes differentiation of mouse embryonic stem cells into mesoderm and endoderm at the expense of neuroectoderm formation.
    Stem Cells Dev, Vol. 14, No. 2. (April 2005), pp. 162-172.
    by KC Pfendler, CS Catuar, JJ Meneses, RA Pedersen
    posted to mesc_project nodal by lukaswindhager on 2008-07-25 08:15:08 as ** along with 2 people journal888 faisalm
  • Smad2 and Smad3 coordinately regulate craniofacial and endodermal development.
    Developmental biology, Vol. 270, No. 2. (15 June 2004), pp. 411-426.
    by Y Liu, M Festing, JC Thompson, M Hester, S Rankin, HM El-Hodiri, AM Zorn, M Weinstein
    posted to early_dev_stage endoderm_formation mesc_project smad by lukaswindhager on 2008-07-25 08:11:44 as **
  • A genomic regulatory network for development.
    Science, Vol. 295, No. 5560. (1 March 2002), pp. 1669-1678.
    by EH Davidson, JP Rast, P Oliveri, A Ransick, C Calestani, CH Yuh, T Minokawa, G Amore, V Hinman, C Arenas-Mena, O Otim, CT Brown, CB Livi, PY Lee, R Revilla, AG Rust, Z Pan, MJ Schilstra, PJ Clarke, MI Arnone, L Rowen, RA Cameron, DR McClay, L Hood, H Bolouri
    posted to development mesc_project model by lukaswindhager on 2008-07-25 08:09:01 as **** along with 7 people and 1 group balajis adepace margaritis ccr lusk edvin dquest EisenLab
  • Differentiation of embryonic stem cells is induced by GATA factors.
    Genes & development, Vol. 16, No. 7. (1 April 2002), pp. 784-789.
    by J Fujikura, E Yamato, S Yonemura, K Hosoda, S Masui, K Nakao, J Miyazaki Ji, H Niwa
    posted to exe gata mesc_project by lukaswindhager on 2008-07-24 15:41:28 as ** along with 1 person MllePapillon
  • Cell fate decisions within the mouse organizer are governed by graded Nodal signals.
    Genes & development, Vol. 17, No. 13. (1 July 2003), pp. 1646-1662.
    by SD Vincent, NR Dunn, S Hayashi, DP Norris, EJ Robertson
    posted to early_dev_stage mesc_project nodal smad by lukaswindhager on 2008-07-24 15:39:21 as ***
  • Self-renewal vs. differentiation of mouse embryonic stem cells.
    Biology of reproduction, Vol. 71, No. 6. (December 2004), pp. 1755-1765.
    by KS O'Shea
    posted to differentiation mesc_project review self_renewal by lukaswindhager on 2008-07-24 15:37:16 as ****
  • The embryonic stem cell transcription factors Oct-4 and FoxD3 interact to regulate endodermal-specific promoter expression.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 6. (19 March 2002), pp. 3663-3667.
    by Y Guo, R Costa, H Ramsey, T Starnes, G Vance, K Robertson, M Kelley, R Reinbold, H Scholer, R Hromas
    posted to foxd3 mesc_project oct4 transcription_factors by lukaswindhager on 2008-07-24 15:25:01 as ***
  • Formation of multiple hearts in mice following deletion of beta-catenin in the embryonic endoderm.
    Developmental cell, Vol. 3, No. 2. (August 2002), pp. 171-181.
    by H Lickert, S Kutsch, B Kanzler, Y Tamai, MM Taketo, R Kemler
    posted to beta-catenin heart_formation mesc_project by lukaswindhager on 2008-07-24 15:22:30 as **
  • Depletion of definitive gut endoderm in Sox17-null mutant mice.
    Development (Cambridge, England), Vol. 129, No. 10. (May 2002), pp. 2367-2379.
    by M Kanai-Azuma, Y Kanai, JM Gad, Y Tajima, C Taya, M Kurohmaru, Y Sanai, H Yonekawa, K Yazaki, PP Tam, Y Hayashi
    posted to early_dev_stage mesc_project sox17 by lukaswindhager on 2008-07-24 15:21:22 as *
  • Mixl1 is required for axial mesendoderm morphogenesis and patterning in the murine embryo.
    Development (Cambridge, England), Vol. 129, No. 15. (August 2002), pp. 3597-3608.
    by AH Hart, L Hartley, K Sourris, ES Stadler, R Li, EG Stanley, PP Tam, AG Elefanty, L Robb
    posted to early_dev_stage mesc_project mixl1 by lukaswindhager on 2008-07-24 15:07:41 as *
  • Inhibition of excess nodal signaling during mouse gastrulation by the transcriptional corepressor DRAP1.
    Science (New York, N.Y.), Vol. 298, No. 5600. (6 December 2002), pp. 1996-1999.
    by R Iratni, YT Yan, C Chen, J Ding, Y Zhang, SM Price, D Reinberg, MM Shen
    posted to drap1 early_dev_stage foxh1 mesc_project by lukaswindhager on 2008-07-24 15:06:13 as ***
  • The Foxh1-dependent autoregulatory enhancer controls the level of Nodal signals in the mouse embryo.
    Development (Cambridge, England), Vol. 129, No. 14. (July 2002), pp. 3455-3468.
    by DP Norris, J Brennan, EK Bikoff, EJ Robertson
    posted to early_dev_stage foxh1 mesc_project pattern_formation by lukaswindhager on 2008-07-24 15:02:21 as **
  • The transcription factor FoxH1 (FAST) mediates Nodal signaling during anterior-posterior patterning and node formation in the mouse.
    Genes & development, Vol. 15, No. 10. (15 May 2001), pp. 1242-1256.
    by M Yamamoto, C Meno, Y Sakai, H Shiratori, K Mochida, Y Ikawa, Y Saijoh, H Hamada
    posted to foxh1 mesc_project pattern_formation by lukaswindhager on 2008-07-24 14:52:28 as **
  • FoxH1 (Fast) functions to specify the anterior primitive streak in the mouse.
    Genes & development, Vol. 15, No. 10. (15 May 2001), pp. 1257-1271.
    by PA Hoodless, M Pye, C Chazaud, E Labbé, L Attisano, J Rossant, JL Wrana
    posted to early_dev_stage foxh1 mesc_project by lukaswindhager on 2008-07-24 14:50:12 as **
  • Genetic dissection of nodal function in patterning the mouse embryo.
    Development (Cambridge, England), Vol. 128, No. 10. (May 2001), pp. 1831-1843.
    by LA Lowe, S Yamada, MR Kuehn
    posted to mesc_project mesoderm_formation nodal by lukaswindhager on 2008-07-24 14:47:48 as **
  • Maintenance of the specification of the anterior definitive endoderm and forebrain depends on the axial mesendoderm: a study using HNF3beta/Foxa2 conditional mutants.
    Developmental biology, Vol. 243, No. 1. (1 March 2002), pp. 20-33.
    by M Hallonet, KH Kaestner, L Martin-Parras, H Sasaki, UA Betz, SL Ang
    posted to foxa2 head_formation late_dev_stage mesc_project by lukaswindhager on 2008-07-24 13:52:32 as *
  • The transcription factor HNF3beta is required in visceral endoderm for normal primitive streak morphogenesis.
    Development (Cambridge, England), Vol. 125, No. 16. (August 1998), pp. 3015-3025.
    by D Dufort, L Schwartz, K Harpal, J Rossant
    posted to early_dev_stage foxa2 mesc_project primitive_streak by lukaswindhager on 2008-07-24 13:51:48 as *
  • Formation of the definitive endoderm in mouse is a Smad2-dependent process.
    Development (Cambridge, England), Vol. 127, No. 14. (July 2000), pp. 3079-3090.
    by KD Tremblay, PA Hoodless, EK Bikoff, EJ Robertson
    posted to early_dev_stage endoderm_formation mesc_project smad by lukaswindhager on 2008-07-24 13:51:05 as ***
  • Nodal signalling in the epiblast patterns the early mouse embryo.
    Nature, Vol. 411, No. 6840. (21 June 2001), pp. 965-969.
    by J Brennan, CC Lu, DP Norris, TA Rodriguez, RS Beddington, EJ Robertson
    posted to early_dev_stage mesc_project nodal pattern_formation by lukaswindhager on 2008-07-24 13:46:31 as ***
  • Mouse gastrulation: the formation of a mammalian body plan.
    Mechanisms of development, Vol. 68, No. 1-2. (November 1997), pp. 3-25.
    by PP Tam, RR Behringer
    posted to early_dev_stage gastrulation mesc_project review by lukaswindhager on 2008-07-24 13:43:23 as ****
  • Eomesodermin is required for mouse trophoblast development and mesoderm formation.
    Nature, Vol. 404, No. 6773. (2 March 2000), pp. 95-99.
    by AP Russ, S Wattler, WH Colledge, SA Aparicio, MB Carlton, JJ Pearce, SC Barton, MA Surani, K Ryan, MC Nehls, V Wilson, MJ Evans
    posted to eomesodermin gastrulation mesc_project by lukaswindhager on 2008-07-24 13:43:10 as *
  • Crucial Transcription Factors in Endoderm and Embryonic Gut Development Are Expressed in Gut-Like Structures from Mouse ES Cells
    Stem Cells, Vol. 24, No. 3. (1 March 2006), pp. 624-630.
    by Rie Matsuura, Hiroshi Kogo, Takunori Ogaeri, Takashi Miwa, Masaki Kuwahara, Yoshiakira Kanai, Takumi Nakagawa, Atsushi Kuroiwa, Toyoshi Fujimoto, Shigeko Torihashi
    posted to mesc_project review transcription_factors by lukaswindhager on 2008-07-21 15:53:47 as **
  • Nanog: A New Recruit to the Embryonic Stem Cell Orchestra
    Cell, Vol. 113, No. 5. (30 May 2003), pp. 551-552.
    by Fatima Cavaleri, Hans R Schöler
    posted to mesc_project nanog self_renewal by lukaswindhager on 2008-07-21 15:02:30 as ***
  • Nodal signaling: developmental roles and regulation.
    Development, Vol. 134, No. 6. (March 2007), pp. 1023-1034.
    by MM Shen
    posted to early_dev_stage mesc_project nodal pattern_formation review by lukaswindhager on 2008-07-21 14:50:36 as *** along with 1 person mim
  • Loss of both GATA4 and GATA6 blocks cardiac myocyte differentiation and results in acardia in mice
    Developmental Biology, Vol. 317, No. 2. (15 May 2008), pp. 614-619.
    by Roong Zhao, Alistair J Watt, Michele A Battle, Jixuan Li, Benjamin J Bondow, Stephen A Duncan
    posted to gata heart_formation mesc_project by lukaswindhager on 2008-07-21 14:36:26 as *
  • Early endoderm development in vertebrates: lineage differentiation and morphogenetic function
    Current Opinion in Genetics & Development, Vol. 13, No. 4. (August 2003), pp. 393-400.
    by Patrick PL Tam, Masami Kanai-Azuma, Yoshiakira Kanai
    posted to endoderm_formation mesc_project review by lukaswindhager on 2008-07-21 13:37:57 as ****
  • Sox17 and beta-catenin cooperate to regulate the transcription of endodermal genes
    Development, Vol. 131, No. 13. (1 July 2004), pp. 3069-3080.
    by Debora Sinner, Scott Rankin, Monica Lee, Aaron M Zorn
    posted to beta-catenin endoderm_formation mesc_project sox17 by lukaswindhager on 2008-07-21 13:28:22 as ***
  • Efficient differentiation of human embryonic stem cells to definitive endoderm
    Nature Biotechnology, Vol. 23, No. 12. (28 October 2005), pp. 1534-1541.
    by Kevin A D'Amour, Alan D Agulnick, Susan Eliazer, Olivia G Kelly, Evert Kroon, Emmanuel E Baetge
    posted to endoderm_formation human mesc_project by lukaswindhager on 2008-07-21 13:25:53 as *
  • Sox17 plays a substantial role in late-stage differentiation of the extraembryonic endoderm in vitro
    J Cell Sci, Vol. 120, No. 21. (1 November 2007), pp. 3859-3869.
    by Masafumi Shimoda, Masami Kanai-Azuma, Kenshiro Hara, Satsuki Miyazaki, Yoshiakira Kanai, Morito Monden, Jun-Ichi Miyazaki
    posted to late_dev_stage mesc_project sox17 by lukaswindhager on 2008-07-21 13:23:39 as *
  • Development of definitive endoderm from embryonic stem cells in culture
    Development, Vol. 131, No. 7. (1 April 2004), pp. 1651-1662.
    by Atsushi Kubo, Katsunori Shinozaki, John M Shannon, Valerie Kouskoff, Marion Kennedy, Savio Woo, Hans J Fehling, Gordon Keller
    posted to activin brachyury endoderm_formation mesc_project by lukaswindhager on 2008-07-21 13:18:55 as *
  • Extra-embryonic endoderm cells derived from ES cells induced by GATA Factors acquire the character of XEN cells.
    BMC Developmental Biology, Vol. 7 (03 July 2007), 80.
    by Daisuke Shimosato, Makoto Shiki, Hitoshi Niwa
    posted to gata mesc_project by lukaswindhager on 2008-07-21 13:15:21 as * along with 1 person MllePapillon
  • Sonic Hedgehog and Other Soluble Factors from Differentiating Embryoid Bodies Inhibit Pancreas Development
    Stem Cells, Vol. 25, No. 5. (1 May 2007), pp. 1156-1165.
    by Josue K Mfopou, Veronique De Groote, Xiabo Xu, Harry Heimberg, Luc Bouwens
    posted to mesc_project by lukaswindhager on 2008-07-21 13:13:13 as *
  • The core endodermal gene network of vertebrates: combining developmental precision with evolutionary flexibility
    BioEssays, Vol. 30, No. 8. (2008), pp. 757-765.
    by Hugh R Woodland, Aaron M Zorn
    posted to early_dev_stage mesc_project review by lukaswindhager on 2008-07-21 13:04:23 as ***
  • Differentiation of mouse embryonic stem cells into a defined neuronal lineage
    Nat Neurosci, Vol. 7, No. 9. (2004), pp. 1003-1009.
    by Miriam Bibel, Jens Richter, Katrin Schrenk, Kerry L Tucker, Volker Staiger, Martin Korte, Magdalena Goetz, Yves-Alain Barde
    posted to mirna stemcell systemsbiology by lukaswindhager on 2008-07-21 12:44:55 as **
  • Characterization of Dicer-deficient murine embryonic stem cells.
    Proc Natl Acad Sci U S A, Vol. 102, No. 34. (23 August 2005), pp. 12135-12140.
    by EP Murchison, JF Partridge, OH Tam, S Cheloufi, GJ Hannon
    posted to mirna stemcell systemsbiology by lukaswindhager on 2008-07-21 12:42:47 as ** along with 2 people tardigrade sebastien_vigneau
  • Embryonic Stem Cell-Specific MicroRNAs
    Developmental Cell, Vol. 5, No. 2. (August 2003), pp. 351-358.
    by Hristo B Houbaviy, Michael F Murray, Phillip A Sharp
    posted to mirna stemcell systemsbiology by lukaswindhager on 2008-07-21 12:41:30 as ** along with 1 person and 1 group heliopais microRNA
  • Stem cell division is regulated by the microRNA pathway
    Nature (08 June 2005)
    by SD Hatfield, HR Shcherbata, KA Fischer, K Nakahara, RW Carthew, H Ruohola-Baker
    posted to mirna stemcell by lukaswindhager on 2008-07-21 12:40:08 as ** along with 5 people RMGraze tkershaw mtagaya hplatero maralena
  • Systems Biology in Practice. Concepts, Implementation and Application.
    (2005), pp. 225-237.
    by E Klipp, R Herwig, A Kowald, C Wierling, H Lehrach
    posted to no-tag by lukaswindhager on 2008-05-09 12:29:09 as read
  • Simulation studies for the identification of genetic networks from cDNA array and regulatory activity data.
    Proc. 2nd Intl. Conf. Systems Biology (2001), pp. 231-238.
    by DE Zak, FJ Doyle, GE Gonye, JS Schwaber
    posted to modelling ode systemsbiology by lukaswindhager on 2008-05-09 12:21:19 as read
  • Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2396-2405.
    by DE Zak, GE Gonye, JS Schwaber, FJ Doyle
    posted to modelling ode systemsbiology by lukaswindhager on 2008-05-09 12:18:47 as read along with 5 people ryang wnpx jrbanga bertelsen aheilbut
  • Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors.
    Nat Biotechnol, Vol. 20, No. 4. (April 2002), pp. 370-375.
    by B Schoeberl, C Eichler-Jonsson, ED Gilles, G Müller
    posted to mapk modelling systemsbiology by lukaswindhager on 2008-05-08 16:49:55 as read along with 4 people thomaskelder tuck sujaikumar renatomilani
  • Kinetic Analysis of a Molecular Model of the Budding Yeast Cell Cycle
    Mol. Biol. Cell, Vol. 11, No. 1. (1 January 2000), pp. 369-391.
    by KC Chen, A Csikasz-Nagy, B Gyorffy, J Val, B Novak, JJ Tyson
    posted to modelling systemsbiology yeast by lukaswindhager on 2008-05-08 16:47:32 as read along with 1 person jbchang
  • Analysis of global control of Escherichia coli carbohydrate uptake.
    BMC systems biology, Vol. 1, No. 42. (2007)
    by A Kremling, K Bettenbrock, ED Gilles
    posted to modelling ode systemsbiology by lukaswindhager on 2008-05-08 16:46:27 as read
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