lukaswindhager's library 67 articles Export

	Optimal spliced alignments of short sequence reads [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180. by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Ratsch posted to no-tag by lukaswindhager on 2008-12-17 10:18:06 as along with 12 people and 1 group GustavoLacerda darshan n00c natstreet druvus malcook jmcq nmohelli caseybrown cthachuk Ema Neeperando SIMR bioinformatics
	Using quality scores and longer reads improves accuracy of Solexa read mapping [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (28 February 2008), 128. by Andrew Smith, Zhenyu Xuan, Michael Zhang posted to no-tag by lukaswindhager on 2008-12-17 10:16:49 as along with 18 people hzoltan seb1 heliopais bozdagd katholt inesdesantiago n00c maren floatingpoint natstreet druvus jfr pengchy farhat ghattem mdimon kmdaily caseybrown
	Stochasticity and cell fate. [My Copy] Science (New York, N.Y.), Vol. 320, No. 5872. (4 April 2008), pp. 65-68. by Richard Losick, Claude Desplan posted to review switches by lukaswindhager on 2008-10-07 08:32:39 as along with 9 people and 1 group guhjy pkm adamnellis Arjeny balabu margaritis paulschlesinger davidlott josedavid GEB
	Systems biology by the rules: hybrid intelligent systems for pathway modeling and discovery. [My Copy] BMC systems biology, Vol. 1 (2007) by William J. Bosl posted to fuzzylogic by lukaswindhager on 2008-09-08 14:55:38 as along with 5 people and 2 groups irenas JeremyZucker wnpx carmaus fmenolascina dIEMoSIRIS MoSi-Rostock
	Dynamic simulation of regulatory networks using SQUAD [My Copy] BMC Bioinformatics, Vol. 8 (26 November 2007), 462. by Alessandro Di Cara, Abhishek Garg, Giovanni De Micheli, Ioannis Xenarios, Luis Mendoza posted to modelling systemsbiology by lukaswindhager on 2008-08-26 13:55:11 as along with 1 person waszak
	Mining metabolic networks for optimal drug targets. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 291-302. by P. Sridhar, B. Song, T. Kahveci, S. Ranka posted to drug_targets systemsbiology by lukaswindhager on 2008-07-29 10:05:28 as
	A genetic regulatory network for Xenopus mesendoderm formation. [My Copy] Developmental biology, Vol. 271, No. 2. (15 July 2004), pp. 467-478. by M. Loose, R. Patient posted to development mesc_project model xenopus by lukaswindhager on 2008-07-25 12:38:19 as
	A glimpse into the molecular entrails of endoderm formation. [My Copy] Genes & development, Vol. 16, No. 8. (15 April 2002), pp. 893-907. by D. Y. Stainier posted to endoderm_formation mesc_project by lukaswindhager on 2008-07-25 08:22:08 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Gastrula organiser and embryonic patterning in the mouse. [My Copy] Seminars in cell & developmental biology, Vol. 15, No. 5. (October 2004), pp. 543-554. by L. Robb, P. P. Tam posted to early_dev_stage mesc_project pattern_formation by lukaswindhager on 2008-07-25 08:21:39 as
	Overexpression of Nodal promotes differentiation of mouse embryonic stem cells into mesoderm and endoderm at the expense of neuroectoderm formation. [My Copy] Stem Cells Dev, Vol. 14, No. 2. (April 2005), pp. 162-172. by K. C. Pfendler, C. S. Catuar, J. J. Meneses, R. A. Pedersen posted to mesc_project nodal by lukaswindhager on 2008-07-25 08:15:08 as along with 2 people journal888 faisalm
	Smad2 and Smad3 coordinately regulate craniofacial and endodermal development. [My Copy] Developmental biology, Vol. 270, No. 2. (15 June 2004), pp. 411-426. by Y. Liu, M. Festing, J. C. Thompson, et al.M. Hester, S. Rankin, H. M. El-Hodiri, A. M. Zorn, M. Weinstein posted to early_dev_stage endoderm_formation mesc_project smad by lukaswindhager on 2008-07-25 08:11:44 as
	A Genomic Regulatory Network for Development [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), pp. 1669-1678. by Eric H. Davidson, Jonathan P. Rast, Paola Oliveri, et al.Andrew Ransick, Cristina Calestani, Chiou-Hwa Yuh, Takuya Minokawa, Gabriele Amore, Veronica Hinman, Cesar Arenas-Mena, Ochan Otim, C. Titus Brown, Carolina B. Livi, Pei Y. Lee, Roger Revilla, Alistair G. Rust, Zheng Pan, Maria J. Schilstra, Peter J. C. Clarke, Maria I. Arnone, Lee Rowen, R. Andrew Cameron, David R. McClay, Leroy Hood, Hamid Bolouri posted to development mesc_project model by lukaswindhager on 2008-07-25 08:09:01 as along with 11 people and 2 groups antonkratz emptyhb yyfwuhan dlobo balajis adepace margaritis ccr lusk edvin dquest GEB EisenLab
	Differentiation of embryonic stem cells is induced by GATA factors. [My Copy] Genes & development, Vol. 16, No. 7. (1 April 2002), pp. 784-789. by J. Fujikura, E. Yamato, S. Yonemura, et al.K. Hosoda, S. Masui, K. Nakao, J. Miyazaki Ji, H. Niwa posted to exe gata mesc_project by lukaswindhager on 2008-07-24 15:41:28 as along with 1 person yayoi
	Cell fate decisions within the mouse organizer are governed by graded Nodal signals. [My Copy] Genes & development, Vol. 17, No. 13. (1 July 2003), pp. 1646-1662. by S. D. Vincent, N. R. Dunn, S. Hayashi, D. P. Norris, E. J. Robertson posted to early_dev_stage mesc_project nodal smad by lukaswindhager on 2008-07-24 15:39:21 as
	Self-renewal vs. differentiation of mouse embryonic stem cells. [My Copy] Biology of reproduction, Vol. 71, No. 6. (December 2004), pp. 1755-1765. by K. S. O'Shea posted to differentiation mesc_project review self_renewal by lukaswindhager on 2008-07-24 15:37:16 as along with 1 person MissButterfly
	The embryonic stem cell transcription factors Oct-4 and FoxD3 interact to regulate endodermal-specific promoter expression. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 6. (19 March 2002), pp. 3663-3667. by Y. Guo, R. Costa, H. Ramsey, et al.T. Starnes, G. Vance, K. Robertson, M. Kelley, R. Reinbold, H. Scholer, R. Hromas posted to foxd3 mesc_project oct4 transcription_factors by lukaswindhager on 2008-07-24 15:25:01 as
	Formation of multiple hearts in mice following deletion of beta-catenin in the embryonic endoderm. [My Copy] Developmental cell, Vol. 3, No. 2. (August 2002), pp. 171-181. by H. Lickert, S. Kutsch, B. Kanzler, Y. Tamai, M. M. Taketo, R. Kemler posted to beta-catenin heart_formation mesc_project by lukaswindhager on 2008-07-24 15:22:30 as
	Depletion of definitive gut endoderm in Sox17-null mutant mice. [My Copy] Development (Cambridge, England), Vol. 129, No. 10. (May 2002), pp. 2367-2379. by M. Kanai-Azuma, Y. Kanai, J. M. Gad, et al.Y. Tajima, C. Taya, M. Kurohmaru, Y. Sanai, H. Yonekawa, K. Yazaki, P. P. Tam, Y. Hayashi posted to early_dev_stage mesc_project sox17 by lukaswindhager on 2008-07-24 15:21:22 as
	Mixl1 is required for axial mesendoderm morphogenesis and patterning in the murine embryo. [My Copy] Development (Cambridge, England), Vol. 129, No. 15. (August 2002), pp. 3597-3608. by A. H. Hart, L. Hartley, K. Sourris, et al.E. S. Stadler, R. Li, E. G. Stanley, P. P. Tam, A. G. Elefanty, L. Robb posted to early_dev_stage mesc_project mixl1 by lukaswindhager on 2008-07-24 15:07:41 as
	Inhibition of excess nodal signaling during mouse gastrulation by the transcriptional corepressor DRAP1. [My Copy] Science (New York, N.Y.), Vol. 298, No. 5600. (6 December 2002), pp. 1996-1999. by R. Iratni, Y. T. Yan, C. Chen, et al.J. Ding, Y. Zhang, S. M. Price, D. Reinberg, M. M. Shen posted to drap1 early_dev_stage foxh1 mesc_project by lukaswindhager on 2008-07-24 15:06:13 as
	The Foxh1-dependent autoregulatory enhancer controls the level of Nodal signals in the mouse embryo. [My Copy] Development (Cambridge, England), Vol. 129, No. 14. (July 2002), pp. 3455-3468. by D. P. Norris, J. Brennan, E. K. Bikoff, E. J. Robertson posted to early_dev_stage foxh1 mesc_project pattern_formation by lukaswindhager on 2008-07-24 15:02:21 as
	The transcription factor FoxH1 (FAST) mediates Nodal signaling during anterior-posterior patterning and node formation in the mouse. [My Copy] Genes & development, Vol. 15, No. 10. (15 May 2001), pp. 1242-1256. by M. Yamamoto, C. Meno, Y. Sakai, et al.H. Shiratori, K. Mochida, Y. Ikawa, Y. Saijoh, H. Hamada posted to foxh1 mesc_project pattern_formation by lukaswindhager on 2008-07-24 14:52:28 as
	FoxH1 (Fast) functions to specify the anterior primitive streak in the mouse. [My Copy] Genes & development, Vol. 15, No. 10. (15 May 2001), pp. 1257-1271. by P. A. Hoodless, M. Pye, C. Chazaud, et al.E. Labbé, L. Attisano, J. Rossant, J. L. Wrana posted to early_dev_stage foxh1 mesc_project by lukaswindhager on 2008-07-24 14:50:12 as
	Genetic dissection of nodal function in patterning the mouse embryo. [My Copy] Development (Cambridge, England), Vol. 128, No. 10. (May 2001), pp. 1831-1843. by L. A. Lowe, S. Yamada, M. R. Kuehn posted to mesc_project mesoderm_formation nodal by lukaswindhager on 2008-07-24 14:47:48 as
	Maintenance of the specification of the anterior definitive endoderm and forebrain depends on the axial mesendoderm: a study using HNF3beta/Foxa2 conditional mutants. [My Copy] Developmental biology, Vol. 243, No. 1. (1 March 2002), pp. 20-33. by M. Hallonet, K. H. Kaestner, L. Martin-Parras, H. Sasaki, U. A. Betz, S. L. Ang posted to foxa2 head_formation late_dev_stage mesc_project by lukaswindhager on 2008-07-24 13:52:32 as
	The transcription factor HNF3beta is required in visceral endoderm for normal primitive streak morphogenesis. [My Copy] Development (Cambridge, England), Vol. 125, No. 16. (August 1998), pp. 3015-3025. by D. Dufort, L. Schwartz, K. Harpal, J. Rossant posted to early_dev_stage foxa2 mesc_project primitive_streak by lukaswindhager on 2008-07-24 13:51:48 as
	Formation of the definitive endoderm in mouse is a Smad2-dependent process. [My Copy] Development (Cambridge, England), Vol. 127, No. 14. (July 2000), pp. 3079-3090. by K. D. Tremblay, P. A. Hoodless, E. K. Bikoff, E. J. Robertson posted to early_dev_stage endoderm_formation mesc_project smad by lukaswindhager on 2008-07-24 13:51:05 as
	Nodal signalling in the epiblast patterns the early mouse embryo. [My Copy] Nature, Vol. 411, No. 6840. (21 June 2001), pp. 965-969. by J. Brennan, C. C. Lu, D. P. Norris, T. A. Rodriguez, R. S. Beddington, E. J. Robertson posted to early_dev_stage mesc_project nodal pattern_formation by lukaswindhager on 2008-07-24 13:46:31 as
	Mouse gastrulation: the formation of a mammalian body plan. [My Copy] Mechanisms of development, Vol. 68, No. 1-2. (November 1997), pp. 3-25. by P. P. Tam, R. R. Behringer posted to early_dev_stage gastrulation mesc_project review by lukaswindhager on 2008-07-24 13:43:23 as
	Eomesodermin is required for mouse trophoblast development and mesoderm formation. [My Copy] Nature, Vol. 404, No. 6773. (2 March 2000), pp. 95-99. by A. P. Russ, S. Wattler, W. H. Colledge, et al.S. A. Aparicio, M. B. Carlton, J. J. Pearce, S. C. Barton, M. A. Surani, K. Ryan, M. C. Nehls, V. Wilson, M. J. Evans posted to eomesodermin gastrulation mesc_project by lukaswindhager on 2008-07-24 13:43:10 as
	Crucial Transcription Factors in Endoderm and Embryonic Gut Development Are Expressed in Gut-Like Structures from Mouse ES Cells [My Copy] Stem Cells, Vol. 24, No. 3. (1 March 2006), pp. 624-630. by Rie Matsuura, Hiroshi Kogo, Takunori Ogaeri, et al.Takashi Miwa, Masaki Kuwahara, Yoshiakira Kanai, Takumi Nakagawa, Atsushi Kuroiwa, Toyoshi Fujimoto, Shigeko Torihashi posted to mesc_project review transcription_factors by lukaswindhager on 2008-07-21 15:53:47 as
	Nanog: A New Recruit to the Embryonic Stem Cell Orchestra [My Copy] Cell, Vol. 113, No. 5. (30 May 2003), pp. 551-552. by Fatima Cavaleri, Hans R. Schöler posted to mesc_project nanog self_renewal by lukaswindhager on 2008-07-21 15:02:30 as
	Nodal signaling: developmental roles and regulation. [My Copy] Development, Vol. 134, No. 6. (March 2007), pp. 1023-1034. by M. M. Shen posted to early_dev_stage mesc_project nodal pattern_formation review by lukaswindhager on 2008-07-21 14:50:36 as along with 1 person mim
	Loss of both GATA4 and GATA6 blocks cardiac myocyte differentiation and results in acardia in mice [My Copy] Developmental Biology, Vol. 317, No. 2. (15 May 2008), pp. 614-619. by Roong Zhao, Alistair J. Watt, Michele A. Battle, Jixuan Li, Benjamin J. Bondow, Stephen A. Duncan posted to gata heart_formation mesc_project by lukaswindhager on 2008-07-21 14:36:26 as
	Early endoderm development in vertebrates: lineage differentiation and morphogenetic function [My Copy] Current Opinion in Genetics & Development, Vol. 13, No. 4. (August 2003), pp. 393-400. by Patrick P. L. Tam, Masami Kanai-Azuma, Yoshiakira Kanai posted to endoderm_formation mesc_project review by lukaswindhager on 2008-07-21 13:37:57 as
	Sox17 and beta-catenin cooperate to regulate the transcription of endodermal genes [My Copy] Development, Vol. 131, No. 13. (1 July 2004), pp. 3069-3080. by Debora Sinner, Scott Rankin, Monica Lee, Aaron M. Zorn posted to beta-catenin endoderm_formation mesc_project sox17 by lukaswindhager on 2008-07-21 13:28:22 as
	Efficient differentiation of human embryonic stem cells to definitive endoderm [My Copy] Nature Biotechnology, Vol. 23, No. 12. (28 October 2005), pp. 1534-1541. by Kevin A. D'Amour, Alan D. Agulnick, Susan Eliazer, Olivia G. Kelly, Evert Kroon, Emmanuel E. Baetge posted to endoderm_formation human mesc_project by lukaswindhager on 2008-07-21 13:25:53 as
	Sox17 plays a substantial role in late-stage differentiation of the extraembryonic endoderm in vitro [My Copy] J Cell Sci, Vol. 120, No. 21. (1 November 2007), pp. 3859-3869. by Masafumi Shimoda, Masami Kanai-Azuma, Kenshiro Hara, et al.Satsuki Miyazaki, Yoshiakira Kanai, Morito Monden, Jun-Ichi Miyazaki posted to late_dev_stage mesc_project sox17 by lukaswindhager on 2008-07-21 13:23:39 as
	Development of definitive endoderm from embryonic stem cells in culture [My Copy] Development, Vol. 131, No. 7. (1 April 2004), pp. 1651-1662. by Atsushi Kubo, Katsunori Shinozaki, John M. Shannon, et al.Valerie Kouskoff, Marion Kennedy, Savio Woo, Hans J. Fehling, Gordon Keller posted to activin brachyury endoderm_formation mesc_project by lukaswindhager on 2008-07-21 13:18:55 as
	Extra-embryonic endoderm cells derived from ES cells induced by GATA Factors acquire the character of XEN cells. [My Copy] BMC Developmental Biology, Vol. 7 (03 July 2007), 80. by Daisuke Shimosato, Makoto Shiki, Hitoshi Niwa posted to gata mesc_project by lukaswindhager on 2008-07-21 13:15:21 as
	Sonic Hedgehog and Other Soluble Factors from Differentiating Embryoid Bodies Inhibit Pancreas Development [My Copy] Stem Cells, Vol. 25, No. 5. (1 May 2007), pp. 1156-1165. by Josue K. Mfopou, Veronique De Groote, Xiabo Xu, Harry Heimberg, Luc Bouwens posted to mesc_project by lukaswindhager on 2008-07-21 13:13:13 as
	The core endodermal gene network of vertebrates: combining developmental precision with evolutionary flexibility [My Copy] BioEssays, Vol. 30, No. 8. (2008), pp. 757-765. by Hugh R. Woodland, Aaron M. Zorn posted to early_dev_stage mesc_project review by lukaswindhager on 2008-07-21 13:04:23 as
	Differentiation of mouse embryonic stem cells into a defined neuronal lineage [My Copy] Nat Neurosci, Vol. 7, No. 9. (2004), pp. 1003-1009. by Miriam Bibel, Jens Richter, Katrin Schrenk, et al.Kerry L. Tucker, Volker Staiger, Martin Korte, Magdalena Goetz, Yves-Alain Barde posted to mirna stemcell systemsbiology by lukaswindhager on 2008-07-21 12:44:55 as
	Characterization of Dicer-deficient murine embryonic stem cells. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 34. (23 August 2005), pp. 12135-12140. by E. P. Murchison, J. F. Partridge, O. H. Tam, S. Cheloufi, G. J. Hannon posted to mirna stemcell systemsbiology by lukaswindhager on 2008-07-21 12:42:47 as along with 2 people tardigrade sebastien_vigneau
	Embryonic Stem Cell-Specific MicroRNAs [My Copy] Developmental Cell, Vol. 5, No. 2. (August 2003), pp. 351-358. by Hristo B. Houbaviy, Michael F. Murray, Phillip A. Sharp posted to mirna stemcell systemsbiology by lukaswindhager on 2008-07-21 12:41:30 as along with 1 person and 1 group heliopais microRNA
	Stem cell division is regulated by the microRNA pathway. [My Copy] Nature, Vol. 435, No. 7044. (16 June 2005), pp. 974-978. by S. D. Hatfield, H. R. Shcherbata, K. A. Fischer, K. Nakahara, R. W. Carthew, H. Ruohola-Baker posted to mirna stemcell by lukaswindhager on 2008-07-21 12:40:08 as along with 6 people ajaymalik RMGraze tkershaw mtagaya hplatero maralena
	Systems Biology in Practice. Concepts, Implementation and Application. [My Copy] (2005), pp. 225-237. by E. Klipp, R. Herwig, A. Kowald, C. Wierling, H. Lehrach posted to no-tag by lukaswindhager on 2008-05-09 12:29:09 as
	Simulation studies for the identification of genetic networks from cDNA array and regulatory activity data. [My Copy] Proc. 2nd Intl. Conf. Systems Biology (2001), pp. 231-238. by D. E. Zak, F. J. Doyle, G. E. Gonye, J. S. Schwaber posted to modelling ode systemsbiology by lukaswindhager on 2008-05-09 12:21:19 as along with 1 person tonamswish
	Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network. [My Copy] Genome Res, Vol. 13, No. 11. (November 2003), pp. 2396-2405. by D. E. Zak, G. E. Gonye, J. S. Schwaber, F. J. Doyle posted to modelling ode systemsbiology by lukaswindhager on 2008-05-09 12:18:47 as along with 5 people ryang wnpx jrbanga bertelsen aheilbut
	Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors [My Copy] Nature Biotechnology, Vol. 20, No. 4. (01 April 2002), pp. 370-375. by Birgit Schoeberl, Claudia Eichler-Jonsson, Ernst D. Gilles, Gertraud Muller posted to mapk modelling systemsbiology by lukaswindhager on 2008-05-08 16:49:55 as along with 6 people ellarond dkoveal thomaskelder tuck sujaikumar renatomilani

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mesc_project	36
early_dev_stage	14
systemsbiology	14
review	13
fuzzylogic	12
modelling	8
endoderm_formation	7
nodal	5
pattern_formation	5
mirna	4
genomics	4
foxh1	4
stemcell	4
methods	4
ode	4
smad	3
tutorial	3
sox17	3
gata	3
yeast	2
late_dev_stage	2
development	2
heart_formation	2
beta-catenin	2
transcription_factors	2
gastrulation	2
self_renewal	2
mapk	2
foxa2	2
model	2
nanog	1
oct4	1
mesoderm_formation	1
xenopus	1
primitive_streak	1
pheromone	1
human	1
activin	1
eomesodermin	1
mixl1	1
drap1	1
head_formation	1
exe	1
switches	1
drug_targets	1
brachyury	1
differentiation	1
foxd3	1

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