lusk's library 257 articles Export

Ordered by to_read.

	Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells [My Copy] Genome Res. (15 May 2008), gr.072769.107. by Dan Xie, Jun Cai, Na-Yu Chia, Huck Ng, Sheng Zhong posted to impact by lusk on 2009-02-13 05:46:20 as along with 7 people dandaman maximilianh idonaldson isimpson GustavoLacerda phoenixzxl yoonk
	Energy-dependent fitness: A quantitative model for the evolution of yeast transcription factor binding sites [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 34. (26 August 2008), pp. 12376-12381. by Ville Mustonen, Justin Kinney, Curtis G. Callan, Michael LÃ¤ssig posted to neutral organization_paper by lusk on 2009-02-12 23:47:21 as along with 5 people marck emptyhb bmajoros bpcusack zwang
	Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites [My Copy] PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e7. by Daniela Raijman, Ron Shamir, Amos Tanay posted to evolution impact tfbs by lusk on 2008-01-21 22:07:56 as along with 8 people and 1 group marck xili03 aalibes sebastien_vigneau Garamonfok nklee maximilianh emptyhb BioinfoCIPF
	Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information. [My Copy] Nucleic Acids Res, Vol. 31, No. 20. (15 October 2003), pp. 6016-6026. by V. J. Makeev, A. P. Lifanov, A. G. Nazina, D. A. Papatsenko posted to affin_cut impact by lusk on 2007-07-15 02:50:33 as along with 2 people and 2 groups dpollard oannes EisenLab Regulomics_UCHSC
	Coherence and Timing of Cell Cycle Start Examined at Single-Cell Resolution [My Copy] Molecular Cell, Vol. 21, No. 1. (6 January 2006), pp. 3-14. by James M. Bean, Eric D. Siggia, Frederick R. Cross posted to flow_cytometry inside by lusk on 2007-05-08 01:30:44 as along with 1 person balabu
	Constructing transcriptional regulatory networks [My Copy] Genes & Development, Vol. 19, No. 13. (1 July 2005), pp. 1499-1511. by Alexandre Blais, Brian D. Dynlacht posted to inside review by lusk on 2007-04-25 21:11:37 as along with 9 people and 3 groups sergiun fenghezi vertikalist brant balicea xico tabu braingrind jtomasch BTS-PT-AS-CS EisenLab WetBiology
	Computational methods for transcriptional regulation [My Copy] Current Opinion in Genetics & Development In Chromosomes and expression mechanisms, Vol. 15, No. 2. (April 2005), pp. 214-221. by Eric D. Siggia posted to inside review by lusk on 2007-04-25 21:08:54 as
	Gene expression from random libraries of yeast promoters. [My Copy] Genetics, Vol. 172, No. 4. (April 2006), pp. 2113-2122. by M. Ligr, R. Siddharthan, F. R. Cross, E. D. Siggia posted to inside random_library by lusk on 2007-04-21 18:28:38 as along with 1 person tresch
	Beginning at the end with SUMO [My Copy] Nature Structural & Molecular Biology, Vol. 12, No. 7., pp. 565-566. by Michael J. Matunis, Cecile M. Pickart posted to specificity outside by lusk on 2007-02-07 20:17:05 as
	SUMO wrestling with specificity. [My Copy] Structure, Vol. 10, No. 3. (March 2002), pp. 281-282. by A. P. VanDemark, C. P. Hill posted to specificity outside by lusk on 2007-02-07 20:13:58 as
	Structural basis for E2-mediated SUMO conjugation revealed by a complex between ubiquitin-conjugating enzyme Ubc9 and RanGAP1. [My Copy] Cell, Vol. 108, No. 3. (8 February 2002), pp. 345-356. by V. Bernier-Villamor, D. A. Sampson, M. J. Matunis, C. D. Lima posted to structure specificity outside by lusk on 2007-02-04 03:31:28 as
	Sumoylation of heterogeneous nuclear ribonucleoproteins, zinc finger proteins, and nuclear pore complex proteins: a proteomic analysis. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 23. (8 June 2004), pp. 8551-8556. by T. Li, E. Evdokimov, R. F. Shen, et al.C. C. Chao, E. Tekle, T. Wang, E. R. Stadtman, D. C. Yang, P. B. Chock posted to 2d_gel methods outside proteomic by lusk on 2007-02-04 03:20:48 as
	Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards? [My Copy] Journal of Cellular Biochemistry, Vol. 94, No. 5. (2005), pp. 890-898. by David N. Arnosti, Meghana M. Kulkarni posted to impact organization_paper by lusk on 2009-02-13 21:52:56 as along with 2 people raylim olympos
	Information display by transcriptional enhancers [My Copy] Development, Vol. 130, No. 26. (29 December 2003), pp. 6569-6575. by Meghana M. Kulkarni, David N. Arnosti posted to impact by lusk on 2009-02-13 21:52:16 as along with 1 person emptyhb
	Coordinate enhancers share common organizational features in the Drosophila genome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 11. (16 March 2004), pp. 3851-3856. by A. Erives, M. Levine posted to impact by lusk on 2009-02-13 17:54:26 as
	Analysis of transcriptional activation at a distance in Saccharomyces cerevisiae. [My Copy] Mol Cell Biol (25 May 2007) by Krista C C. Dobi, Fred Winston posted to spacing by lusk on 2008-10-15 19:49:07 as along with 1 person cjeans
	Transcriptional regulation of a pair-rule stripe in Drosophila. [My Copy] Genes Dev, Vol. 5, No. 5. (May 1991), pp. 827-839. by S. Small, R. Kraut, T. Hoey, R. Warrior, M. Levine posted to eve flies inside by lusk on 2008-04-13 01:46:37 as along with 1 person and 1 group dpollard EisenLab
	Backup without redundancy: genetic interactions reveal the cost of duplicate gene loss. [My Copy] Mol Syst Biol, Vol. 3 (2007) by J. Ihmels, S. R. Collins, M. Schuldiner, N. J. Krogan, J. S. Weissman posted to next_project by lusk on 2007-07-16 22:04:58 as along with 4 people colmryan dakelley aprasad bpcusack
	Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae. [My Copy] Nucleic Acids Res, Vol. 34, No. 3. (2006), pp. 917-927. by X. Yu, J. Lin, T. Masuda, N. Esumi, D. J. Zack, J. Qian posted to cooperativity cutoff_model by lusk on 2007-05-16 19:40:31 as along with 3 people and 2 groups balajis malcook oannes SIMR bioinformatics Regulomics_UCHSC
	cis-regulatory logic of short-range transcriptional repression in Drosophila melanogaster. [My Copy] Mol Cell Biol, Vol. 25, No. 9. (May 2005), pp. 3411-3420. by M. M. Kulkarni, D. N. Arnosti posted to inside organization_paper by lusk on 2007-04-21 18:30:27 as along with 2 people and 1 group adepace olympos EisenLab
	A systematic method for identifying small-molecule modulators of protein–protein interactions [My Copy] PNAS posted to methods outside sm_mol by lusk on 2007-02-28 21:07:27 as
	C&EN: COVERSTORY - THE SMALL-MOLECULE APPROACH TO BIOLOGY [My Copy] posted to methods outside sm_mol by lusk on 2007-02-28 20:50:02 as
	Distinct and overlapping sets of SUMO-1 and SUMO-2 target proteins revealed by quantitative proteomics. [My Copy] Mol Cell Proteomics, Vol. 5, No. 12. (December 2006), pp. 2298-2310. by A. C. Vertegaal, J. S. Andersen, S. C. Ogg, R. T. Hay, M. Mann, A. I. Lamond posted to proteomic outside methods by lusk on 2007-02-09 20:50:29 as
	Systematic identification and analysis of mammalian small ubiquitin-like modifier substrates. [My Copy] J Biol Chem, Vol. 280, No. 6. (11 February 2005), pp. 5004-5012. by C. B. Gocke, H. Yu, J. Kang posted to sumo outside methods by lusk on 2007-02-07 20:46:30 as along with 1 person guhjy
	Multiple domains in Siz SUMO ligases contribute to substrate selectivity [My Copy] J Cell Sci, Vol. 119, No. 22. (15 November 2006), pp. 4749-4757. by Alison Reindle, Irina Belichenko, Gwendolyn R. Bylebyl, Xiaole L. Chen, Nishant Gandhi, Erica S. Johnson posted to specificity outside e3 by lusk on 2007-02-07 20:22:07 as along with 1 person phoenixzxl
	Distinct functional domains of Ubc9 dictate cell survival and resistance to genotoxic stress. [My Copy] Mol Cell Biol, Vol. 26, No. 13. (July 2006), pp. 4958-4969. by R. C. van Waardenburg, D. M. Duda, C. S. Lancaster, B. A. Schulman, M. A. Bjornsti posted to specificity outside by lusk on 2007-02-07 20:10:26 as
	Role of an N-terminal site of Ubc9 in SUMO-1, -2, and -3 binding and conjugation. [My Copy] Biochemistry, Vol. 42, No. 33. (26 August 2003), pp. 9959-9969. by M. H. Tatham, S. Kim, B. Yu, et al.E. Jaffray, J. Song, J. Zheng, M. S. Rodriguez, R. T. Hay, Y. Chen posted to structure specificity outside by lusk on 2007-02-04 03:51:16 as
	The RanBP2 SUMO E3 ligase is neither HECT- nor RING-type. [My Copy] Nat Struct Mol Biol, Vol. 11, No. 10. (October 2004), pp. 984-991. by A. Pichler, P. Knipscheer, H. Saitoh, T. K. Sixma, F. Melchior posted to structure specificity ranbp2 outside by lusk on 2007-02-04 03:16:39 as
	Unique binding interactions among Ubc9, SUMO and RanBP2 reveal a mechanism for SUMO paralog selection [My Copy] Nature Structural & Molecular Biology, Vol. 12, No. 1. (19 December 2004), 67. by Michael H. Tatham, Suhkmann Kim, Ellis Jaffray, Jing Song, Yuan Chen, Ronald T. Hay posted to structure specificity outside by lusk on 2007-02-04 03:11:16 as
	Insights into E3 ligase activity revealed by a SUMO–RanGAP1–Ubc9–Nup358 complex [My Copy] Nature, Vol. 435, No. 7042., pp. 687-692. by David Reverter, Christopher D. Lima posted to structure outside e3 by lusk on 2007-02-04 03:01:50 as
	Purification and activity assays for Ubc9, the ubiquitin-conjugating enzyme for the small ubiquitin-like modifier SUMO. [My Copy] Methods Enzymol, Vol. 398 (2005), pp. 74-87. by A. A. Yunus, C. D. Lima posted to purification outside methods activity by lusk on 2007-02-04 02:56:03 as along with 1 person caroline
	An extended consensus motif enhances the specificity of substrate modification by SUMO [My Copy] The EMBO Journal, Vol. aop, No. current. (12 October 2006) by Shen-Hsi Yang, Alex Galanis, James Witty, Andrew D. Sharrocks posted to specificity outside motif consensus by lusk on 2007-02-04 02:47:40 as along with 1 person niamh-shan
	Identifying pattern-defined regulatory islands in mammalian genomes [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 24. (12 June 2007), pp. 10116-10121. by Tom H. Cheung, Kristen K. Barthel, Yin L. Kwan, Xuedong Liu posted to spacing by lusk on 2008-10-19 03:34:02 as along with 1 person oelemento
	Ubc9 fusion-directed SUMOylation (UFDS): a method to analyze function of protein SUMOylation. [My Copy] Nature methods, Vol. 4, No. 3. (04 March 2007), pp. 245-250. by Astrid Jakobs, Jesko Koehnke, Fabian Himstedt, et al.Martin Funk, Bernhard Korn, Matthias Gaestel, Rainer Niedenthal posted to methods outside by lusk on 2007-04-04 00:09:36 as along with 1 person guhjy
	SUMO, the three Rs and cancer. [My Copy] Curr Top Microbiol Immunol, Vol. 313 (2007), pp. 49-71. by J. S. Seeler, O. Bischof, K. Nacerddine, A. Dejean posted to cancer outside review by lusk on 2007-04-03 23:45:13 as
	Dissecting the ubiquitin pathway by mass spectrometry [My Copy] Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics In Posttranslational Modifications in Proteomics, Vol. 1764, No. 12. (December 2006), pp. 1940-1947. by Ping Xu, Junmin Peng posted to outside proteomic review by lusk on 2007-04-03 23:43:52 as along with 1 person guhjy
	Discovery of Small Molecule Inhibitors of the Interaction of the Thyroid Hormone Receptor with Transcriptional Coregulators [My Copy] J. Biol. Chem., Vol. 280, No. 52. (30 December 2005), pp. 43048-43055. by Leggy A. Arnold, Eva Estebanez-Perpina, Marie Togashi, et al.Natalia Jouravel, Anang Shelat, Andrea C. Mcreynolds, Ellena Mar, Phuong Nguyen, John D. Baxter, Robert J. Fletterick, Paul Webb, Kiplin R. Guy posted to methods outside sm_mol by lusk on 2007-04-03 01:23:03 as
	SUMO protein modification. [My Copy] Biochim Biophys Acta, Vol. 1695, No. 1-3. (29 November 2004), pp. 113-131. by R. J. Dohmen posted to outside review by lusk on 2007-03-01 21:32:36 as along with 2 people carlosjavierna viktor21614
	SUMO: a ubiquitin-like protein modifier. [My Copy] Yale J Biol Med, Vol. 78, No. 4. (July 2005), pp. 197-201. by M. B. Kroetz posted to outside review by lusk on 2007-03-01 21:29:24 as
	Functional variation and evolution of non-coding DNA [My Copy] Current Opinion in Genetics & Development In Genomes and evolution, Vol. 16, No. 6. (December 2006), pp. 559-564. by C. Bird, B. Stranger, E. Dermitzakis posted to inside review by lusk on 2007-02-13 23:45:16 as along with 9 people and 4 groups jrhill jameswasmuth dpollard dchughes adepace sujaikumar candypmcg Stew cisevol EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
	The molecular population genetics of regulatory genes [My Copy] Molecular Ecology, Vol. 9, No. 10. (2000), pp. 1451-1461. by Michael D. Purugganan posted to inside popgen review by lusk on 2007-02-13 23:43:42 as
	The transcriptional regulatory code of eukaryotic cells - insights from genome-wide analysis of chromatin organization and transcription factor binding [My Copy] Current Opinion in Cell Biology In Nucleus and gene expression, Vol. 18, No. 3. (June 2006), pp. 291-298. by Leah O. Barrera, Bing Ren posted to inside review by lusk on 2007-02-13 23:42:55 as along with 4 people and 4 groups dchughes cmm oannes vietanh0 FAB-lab G4ID Regulomics_UCHSC Genetics-of-Gambling
	Evolution of cis-regulatory regions versus codifying regions. [My Copy] Int J Dev Biol, Vol. 47, No. 7-8. (2003), pp. 665-673. by F. Rodríguez-Trelles, R. Tarrío, F. J. Ayala posted to inside review by lusk on 2007-02-13 23:36:06 as
	Orchestrated response: a symphony of transcription factors for gene control. [My Copy] Genes Dev, Vol. 14, No. 20. (15 October 2000), pp. 2551-2569. by B. Lemon, R. Tjian posted to inside review by lusk on 2007-02-13 23:32:20 as along with 3 people and 3 groups athma ana nickluscombe structural_bioinformatics Bioinformatics EBI-regulation
	Transcriptional coactivator complexes. [My Copy] Annu Rev Biochem, Vol. 70 (2001), pp. 475-501. by A. M. Näär, B. D. Lemon, R. Tjian posted to review inside by lusk on 2007-02-13 23:30:32 as along with 1 person and 1 group nickluscombe EBI-regulation
	Transcriptional regulation in Drosophila: the post-genome challenge. [My Copy] Funct Integr Genomics, Vol. 1, No. 4. (March 2001), pp. 223-234. by M. D. Biggin, R. Tjian posted to inside review by lusk on 2007-02-13 23:29:27 as
	Transcription regulation and animal diversity [My Copy] Nature, Vol. 424, No. 6945. (10 July 2003), pp. 147-151. by Michael Levine, Robert Tjian posted to inside review by lusk on 2007-02-13 23:28:22 as along with 10 people and 3 groups maximilianh provero dlobo Lauren_Jones xico nickluscombe djkt Jporci heliopais brant GEB WetBiology EBI-regulation
	Regulatory diversity among metazoan co-activator complexes. [My Copy] Nat Rev Mol Cell Biol, Vol. 5, No. 5. (May 2004), pp. 403-410. by D. J. Taatjes, M. T. Marr, R. Tjian posted to inside review by lusk on 2007-02-13 23:27:57 as
	Adaptations to fluctuating selection in Drosophila. [My Copy] Proc Natl Acad Sci U S A (7 February 2007) by Ville Mustonen, Michael Lässig posted to theory selection jc by lusk on 2007-02-10 01:27:06 as along with 1 person and 1 group dpollard EisenLab
	Global Analysis of Protein Sumoylation in Saccharomyces cerevisiae [My Copy] J. Biol. Chem., Vol. 279, No. 44. (29 October 2004), pp. 45662-45668. by James A. Wohlschlegel, Erica S. Johnson, Steven I. Reed, John R. Yates posted to proteomic outside methods by lusk on 2007-02-09 20:52:51 as

Note: You may cite this page as: http://www.citeulike.org/user/lusk/order/to_read

Result page: 1 2 3 4 5 6 Next

outside	69
inside	55
organization_paper	33
review	30
impact	25
methods	23
eisen_journal_club	18
specificity	15
affin_cut	12
cutoff_model	11
proteomic	11
round_robin	10
structure	10
jc	8
spacing	8
bibus	5
sm_mol	5
cancer	4
deletion	4
evolution	4
regulon	4
rich_presented	4
stuart_presented	4
colin_presented	3
cooperativity	3
devin_presented	3
e3	3
flies	3
information	3
motif	3
next_project	3
nucleosome	3
290	2
angela_presented	2
brant_presented	2
danr_presented	2
drosophila	2
eve	2
gam1	2
g_protein	2
in_depth	2
insertion	2
integrated	2
mcm1	2
module_inference	2
null	2
random_library	2
sequencing	2
skn7	2
sumo	2
turnover_rate	2
2d_gel	1
activity	1
affinity	1
alanine_scanning	1
alignment	1
amplification	1
binding	1
confocal	1
consensus	1
dna	1
emily_presented	1
fkh1	1
flow_cytometry	1
fret	1
fungal_phylogeny	1
genny	1
grammar	1
hek293	1
hky	1
identification	1
illumina	1
knockout	1
landscape	1
method	1
microarray	1
mouse	1
ndd1	1
network	1
neutral	1
overlap	1
pias	1
plant	1
plants	1
popgen	1
promoter	1
pseudocounts	1
purification	1
ranbp2	1
rap1	1
reb1	1
replication	1
rnai	1
ryan_presented	1
sea_urchin	1
segmentation	1
selection	1
senescence	1
stewart_presented	1
tfbs	1
theory	1
transplantation	1
tss	1
weighted_average	1
yap1	1

lusk's library 257 articles Export

lusk's tags