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lylu's library [16 articles]

Recent papers added to lylu's library.
  • KAAS: an automatic genome annotation and pathway reconstruction server
    Nucleic Acids Research, Vol. 35 (2007)
    posted to annotation genome pathway reconstruction by lylu on 2008-03-14 04:09:38 as read
  • Current trends in the bioinformatic sequence analysis of metabolic pathways in prokaryotes
    Brief Bioinform, Vol. 9, No. 1. (1 January 2008), pp. 34-45.
    by Matteo Brilli, Renato Fani, Pietro Lio
    posted to metabolic pathway review by lylu on 2008-03-14 03:58:16 as read along with 2 people Tingting renatomilani
  • Reverse engineering of regulatory networks in human B cells.
    Nat Genet (20 March 2005)
    by Katia Basso, Adam A A Margolin, Gustavo Stolovitzky, Ulf Klein, Riccardo Dalla-Favera, Andrea Califano
    posted to engineering reverse by lylu on 2008-02-29 13:39:23 as **** along with 8 people snuppepuppan kentsis dragonrez jfr wnpx raiyar naegele heliopais
  • The model organism as a system: integrating 'omics' data sets
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 3., pp. 198-210.
    by Andrew R Joyce, Bernhard
    posted to integrating omics review by lylu on 2008-01-08 08:12:20 as read along with 8 people csanford balajis wnpx dgront mmt lh1 vietanh0 maburkitt
  • Genome-scale in silico aided metabolic analysis and flux comparisons of Escherichia coli to improve succinate production
    Applied Microbiology and Biotechnology, Vol. 73, No. 4. (28 December 2006), pp. 887-894.
    by Qingzhao Wang, Xun Chen, Yudi Yang, Xueming Zhao
    posted to analysis genome-scale metabolic by lylu on 2008-01-08 07:48:53 as **
  • Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states.
    Genome Res, Vol. 14, No. 9. (September 2004), pp. 1797-1805.
    by JL Reed, BØ Palsson
    posted to correlated reaction subsets by lylu on 2008-01-05 04:31:55 as *** along with 2 people michaelbarton comb
  • The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
    Metabolic Engineering, Vol. 5, No. 4. (October 2003), pp. 264-276.
    by R Mahadevan, CH Schilling
    posted to analysis flux variability by lylu on 2007-12-30 15:35:34 as *** along with 1 person and 1 group JeremyZucker MetabolicModeling
  • Experimental and Computational Assessment of Conditionally Essential Genes in Escherichia coli
    J. Bacteriol., Vol. 188, No. 23. (1 December 2006), pp. 8259-8271.
    by Andrew R Joyce, Jennifer L Reed, Aprilfawn White, Robert Edwards, Andrei Osterman, Tomoya Baba, Hirotada Mori, Scott A Lesely, Bernhard O Palsson, Sanjay Agarwalla
    posted to essentiality genes by lylu on 2007-12-29 05:48:29 as ** along with 1 person JeremyZucker
  • Genome-Scale Thermodynamic Analysis of Escherichia coli Metabolism
    Biophys. J., Vol. 90, No. 4. (15 February 2006), pp. 1453-1461.
    by Christopher S Henry, Matthew D Jankowski, Linda J Broadbelt, Vassily Hatzimanikatis
    posted to coli escherichia thermodynamics by lylu on 2007-12-29 05:45:55 as ** along with 2 people JeremyZucker csanford
  • Thermodynamics-Based Metabolic Flux Analysis
    Biophys. J., Vol. 92, No. 5. (1 March 2007), pp. 1792-1805.
    by Christopher S Henry, Linda J Broadbelt, Vassily Hatzimanikatis
    posted to mfa thermodynamics by lylu on 2007-12-29 05:43:13 as *** along with 1 person JeremyZucker
  • Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox
    Nature Protocols, Vol. 2 (29 March 2007), pp. 727-738.
    by Scott A Becker, Adam M Feist, Bernhard
    posted to modeling software by lylu on 2007-12-28 15:19:11 as read
  • Systems approach to refining genome annotation
    PNAS, Vol. 103, No. 46. (14 November 2006), pp. 17480-17484.
    by Jennifer L Reed, Trina R Patel, Keri H Chen, Andrew R Joyce, Margaret K Applebee, Christopher D Herring, Olivia T Bui, Eric M Knight, Stephen S Fong, Bernhard O Palsson
    posted to annotation genome modeling by lylu on 2007-12-19 02:37:19 as *** along with 4 people and 1 group grahamc parkinsonlab jrbanga kdang ParkinsonLab_at_MaRS
  • Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism
    Genome Res., Vol. 15, No. 6. (1 June 2005), pp. 820-829.
    by Irina Borodina, Preben Krabben, Jens Nielsen
    posted to genome-scale network reconstruction by lylu on 2007-12-19 02:35:48 as read along with 1 person JeremyZucker
  • Towards multidimensional genome annotation
    Nature Reviews Genetics, Vol. 7, No. 2., pp. 130-141.
    by Jennifer L Reed, Iman Famili, Ines Thiele, Bernhard O Palsson
    posted to annotation genome network reconstruction review by lylu on 2007-12-17 09:07:31 as read along with 10 people and 4 groups jyuh jfr balajis eweaver dchughes cmm raiyar massivemayhem wenhan zwang FAB-lab G4ID steinmetzlab Genetics-of-Gambling
  • Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri
    Mol Syst Biol, Vol. 2 (31 January 2006)
    by Adam M Feist, Johannes C Scholten, Bernhard O Palsson, Fred J Brockman, Trey Ideker
    posted to case metabolic reconstruction by lylu on 2007-12-17 08:53:27 as read
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