macavity1g's library 61 articles Export

	Group testing for pathway analysis improves comparability of different microarray data sets. [My Copy] Bioinformatics (7 August 2006) by Theodora Manoli, Norbert Gretz, Hermann-Josef J. Gröne, Marc Kenzelmann, Roland Eils, Benedikt Brors posted to microarray by macavity1g on 2008-02-19 03:32:01 as along with 4 people and 1 group jfr ealloza jdiggans ptrobajo BioinfoCIPF
	Module-based outcome prediction using breast cancer compendia. [My Copy] PLoS ONE, Vol. 2, No. 10. (2007) by M. H. van Vliet, C. N. Klijn, L. F. Wessels, M. J. Reinders posted to no-tag by macavity1g on 2008-01-14 03:44:18 as along with 4 people Zephyrus winterschlaefer jfr ptrobajo
	GOSim - an R-package for computation of information theoretic GO similarities between terms and gene products [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (22 May 2007), 166. by Holger Frohlich, Nora Speer, Annemarie Poustka, Tim BeiSZbarth posted to go microarray by macavity1g on 2007-05-29 03:52:29 as along with 6 people dandaman natstreet guhjy jfr sgoetz RamuAnandakrishnan
	Coexpression Analysis of Human Genes Across Many Microarray Data Sets [My Copy] Genome Research, Vol. 14, No. 6. (June 2004), pp. 1085-1094. by Homin K. Lee, Amy K. Hsu, Jon Sajdak, Jie Qin, Paul Pavlidis posted to go microarray by macavity1g on 2007-04-30 19:24:25 as along with 17 people and 2 groups sficklin cabbagezs cswinburne pengchy jiny maryee gpalidwor giovanni jeremymiller hawkeyehammer grahamc raylim sgoetz wilbur jo_davies nedwards dragonrez GeschwindLab Indigene
	An information-theoretic definition of similarity [My Copy] In Proc. 15th International Conf. on Machine Learning (1998), pp. 296-304. by Dekang Lin posted to no-tag by macavity1g on 2007-04-30 19:20:54 as along with 27 people and 17 groups ulmer memming jkominek jiria camster dbk sourada korakot LeightonP frednicolier parmentierf JacquesC mortimer mote lwilliams jelsas jtextori barry ingo gangli garyfeng okarsligil onlyme gaudan Tronhus CitoJam sgoetz WIT-KA streptomyces NU-PRL Philosophy_of_Information UoY-CS-AIG dbk-lab Blog_and_Wiki_Research structural_bioinformatics tulip ReadingLab ASR ISI NLP SLA Bioinformatics LanguageAndBrain AI
	Semantic Similarity Based on Corpus Statistics and Lexical Taxonomy [My Copy] by Jay J. Jiang, David W. Conrath posted to no-tag by macavity1g on 2007-04-30 19:18:46 as along with 1 person styliani
	Correlation between gene expression and GO semantic similarity [My Copy] Computational Biology and Bioinformatics, IEEE/ACM Transactions on In Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 2, No. 4. (c 2005), pp. 330-338. by J. L. Sevilla, V. Segura, A. Podhorski, et al.E. Guruceaga, J. M. Mato, L. A. Martinez-Cruz, F. J. Corrales, A. Rubio posted to go by macavity1g on 2007-04-30 19:15:30 as along with 1 person MarcoAlvarez
	A new measure for functional similarity of gene products based on Gene Ontology [My Copy] BMC Bioinformatics, Vol. 7 (15 June 2006), 302. by Andreas Schlicker, Francisco S. Domingues, Jorg Rahnenfuhrer, Thomas Lengauer posted to go by macavity1g on 2007-04-30 19:10:22 as along with 8 people and 1 group stefanorb sgoetz MarcoAlvarez bsamal yas CitoJam gaudan iris_2001 T_lab
	Ontological analysis of gene expression data: current tools, limitations, and open problems [My Copy] Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3587-3595. by Purvesh Khatri, Sorin Draghici posted to go by macavity1g on 2007-04-30 19:09:22 as along with 18 people and 1 group darian bertelsen jperkins ipark-kaist gjuggler isakemal Stew shikin diamantis Cortel dragonrez Garamonfok sgoetz heliopais kristen yggdrasil ellakat marck Bioinformatics - CRUK
	GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes [My Copy] Bioinformatics, Vol. 20, No. 18., 3710. by Elizabeth I. Boyle, Shuai Weng, Jeremy Gollub, et al.Heng Jin, David Botstein, J. Michael Cherry, Gavin Sherlock posted to go by macavity1g on 2007-04-30 19:07:21 as along with 6 people chasmand druvus natstreet cjeans kintoki roys
	Using GOstats to test gene lists for GO term association [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 257-258. by S. Falcon, R. Gentleman posted to go by macavity1g on 2007-04-30 19:06:12 as along with 8 people schwalb srp33 aviad_work heliopais jfr jandot guhjy mcgannd
	GO PaD: the Gene Ontology Partition Database. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by G. Alterovitz, M. Xiang, M. Mohan, M. F. Ramoni posted to go by macavity1g on 2007-04-30 19:02:10 as along with 3 people hollandorange jfr chrisamiller
	A robust hybrid between genetic algorithm and support vector machine for extracting an optimal feature gene subset. [My Copy] Genomics, Vol. 85, No. 1. (January 2005), pp. 16-23. by L. Li, W. Jiang, X. Li, et al.K. L. Moser, Z. Guo, L. Du, Q. Wang, E. J. Topol, Q. Wang, S. Rao posted to geneticalgorithm microarray by macavity1g on 2007-03-14 22:08:37 as
	Finding the Optimal Gene Order in Displaying Microarray Data [My Copy] by Seung K. Lee, Yong H. Kim, Byung R. Moon posted to geneticalgorithm microarray by macavity1g on 2007-03-14 22:01:43 as
	A parallel genetic algorithm for single class pattern classification and its application for gene expression profiling in Streptomyces coelicolor. [My Copy] BMC Genomics, Vol. 8 (13 February 2007), 49. by Cuong C. To, Jiri Vohradsky posted to geneticalgorithm microarray by macavity1g on 2007-03-14 21:57:30 as along with 2 people sdvillal atbrew
	Towards precise classification of cancers based on robust gene functional expression profiles [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Zheng Guo, Tianwen Zhang, Xia Li, et al.Qi Wang, Jianzhen Xu, Hui Yu, Jing Zhu, Haiyun Wang, Chenguang Wang, Eric Topol, Qing Wang, Shaoqi Rao posted to go microarray by macavity1g on 2007-03-12 01:54:14 as along with 3 people jfr maryee eckart_bindewald
	Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 50. (12 December 2006), pp. 19033-19038. by Timothy R. Lezon, Jayanth R. Banavar, Marek Cieplak, Amos Maritan, Nina V. Fedoroff posted to entropy microarray by macavity1g on 2007-03-12 01:50:53 as along with 8 people mjoach TRHvidsten tmmurali yaredo jfr aswin hmk iris_2001
	Inference of disease-related molecular logic from systems-based microarray analysis. [My Copy] PLoS computational biology, Vol. 2, No. 6. (16 June 2006) by Vinay Varadan, Dimitris Anastassiou posted to entropy microarray by macavity1g on 2007-03-12 01:50:30 as along with 5 people ipark-kaist jfr wnpx Ao_Li2007 hani_goodarzi
	An entropy-based gene selection method for cancer classification using microarray data. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by X. Liu, A. Krishnan, A. Mondry posted to entropy microarray by macavity1g on 2007-03-12 01:49:31 as along with 1 person jfr
	The `subsequent artificial neural network' (SANN) approach might bring more classificatory power to ANN-based DNA microarray analyses [My Copy] Bioinformatics, Vol. 20, No. 18., 3544. by Roland Linder, Dawn Dew, Holger Sudhoff, et al.Dirk Theegarten, Klaus Remberger, Siegfried J. Poppl, Mathias Wagner posted to microarray neuralnetwork by macavity1g on 2007-03-12 01:48:09 as
	Neural network analysis of lymphoma microarray data: prognosis and diagnosis near-perfect. [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (10 April 2003) by M. C. O'Neill, L. Song posted to microarray neuralnetwork by macavity1g on 2007-03-12 01:47:36 as along with 1 person and 1 group waltsb PBRC_HGL
	Molecular classification of human cancers using a 92-gene real-time quantitative polymerase chain reaction assay. [My Copy] Arch Pathol Lab Med, Vol. 130, No. 4. (April 2006), pp. 465-473. by X. J. Ma, R. Patel, X. Wang, et al.R. Salunga, J. Murage, R. Desai, J. T. Tuggle, W. Wang, S. Chu, K. Stecker, R. Raja, H. Robin, M. Moore, D. Baunoch, D. Sgroi, M. Erlander posted to geneticalgorithm microarray by macavity1g on 2007-03-12 01:46:52 as along with 1 person jfr
	A systems approach to clinical oncology: Focus on breast cancer [My Copy] Proteome Science, Vol. 4, No. 1. (04 April 2006), 5. by Mark Abramovitz, Brian Leyland-Jones posted to breastcancer microarray by macavity1g on 2007-03-12 01:44:18 as along with 3 people and 3 groups karthikram mikeduncan dejori Neoscientists ic4 generif_paper
	Integrated breast cancer genomics. [My Copy] Cancer Cell, Vol. 10, No. 6. (December 2006), pp. 453-454. by H. Edgren, O. Kallioniemi posted to breastcancer microarray by macavity1g on 2007-03-12 01:43:37 as along with 2 people srp33 Terkko
	Gene expression profiling for prognosis using Cox regression. [My Copy] Stat Med, Vol. 23, No. 11. (15 June 2004), pp. 1767-1780. by Y. Pawitan, J. Bjöhle, S. Wedren, et al.K. Humphreys, L. Skoog, F. Huang, L. Amler, P. Shaw, P. Hall, J. Bergh posted to breastcancer cox microarray regression by macavity1g on 2007-03-12 01:43:12 as along with 1 person rdiaz
	Predicting the clinical status of human breast cancer by using gene expression profiles [My Copy] PNAS, Vol. 98, No. 20. (25 September 2001), pp. 11462-11467. by Mike West, Carrie Blanchette, Holly Dressman, et al.Erich Huang, Seiichi Ishida, Rainer Spang, Harry Zuzan, John A. Olson, Jeffrey R. Marks, Joseph R. Nevins posted to breastcancer microarray by macavity1g on 2007-03-12 01:42:43 as along with 4 people frohike jfr bedo jo_davies
	Integration of HapMap-based SNP pattern analysis and gene expression profiling reveals common SNP profiles for cancer therapy outcome predictor genes. [My Copy] Cell Cycle, Vol. 5, No. 22. (November 2006), pp. 2613-2625. by G. V. Glinsky posted to breastcancer microarray snp by macavity1g on 2007-03-12 01:42:00 as along with 3 people guhjy jfr raiyar
	How to best classify breast cancer: conventional and novel classifications (review). [My Copy] Int J Oncol, Vol. 27, No. 5. (November 2005), pp. 1307-1313. by E. Charafe-Jauffret, C. Ginestier, F. Monville, et al.S. Fekairi, J. Jacquemier, D. Birnbaum, F. Bertucci posted to breastcancer microarray by macavity1g on 2007-03-12 01:41:07 as along with 1 person jfr
	Analysis of recursive gene selection approaches from microarray data. [My Copy] Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3741-3747. by F. Li, Y. Yang posted to breastcancer microarray svm by macavity1g on 2007-03-12 01:40:31 as along with 1 person Ayest
	Are data from different gene expression microarray platforms comparable? [My Copy] Genomics, Vol. 83, No. 6. (June 2004), pp. 1164-1168. by A. K. Järvinen, S. Hautaniemi, H. Edgren, et al.P. Auvinen, J. Saarela, O. P. Kallioniemi, O. Monni posted to breastcancer microarray by macavity1g on 2007-03-12 01:39:00 as along with 2 people daforerog yoh
	A Gene-Expression Signature as a Predictor of Survival in Breast Cancer [My Copy] N Engl J Med, Vol. 347, No. 25. (19 December 2002), pp. 1999-2009. by Marc J. van de Vijver, Yudong D. He, Laura J. van 't Veer, et al.Hongyue Dai, Augustinus A. M. Hart, Dorien W. Voskuil, George J. Schreiber, Johannes L. Peterse, Chris Roberts, Matthew J. Marton, Mark Parrish, Douwe Atsma, Anke Witteveen, Annuska Glas, Leonie Delahaye, Tony van der Velde, Harry Bartelink, Sjoerd Rodenhuis, Emiel T. Rutgers, Stephen H. Friend, Rene Bernards posted to breastcancer microarray by macavity1g on 2007-03-12 01:38:21 as along with 15 people and 1 group tonamswish laral csimmons yaredo fesousa lwaldron windman83 winterschlaefer jfr tuck adelgiglio giovanni frohike Ao_Li2007 lyndon GeschwindLab
	Identifying gene expression changes in breast cancer that distinguish early and late relapse among uncured patients. [My Copy] Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1477-1485. by P. Broët, V. A. Kuznetsov, J. Bergh, E. T. Liu, L. D. Miller posted to breastcancer microarray by macavity1g on 2007-03-12 01:37:48 as along with 1 person jfr
	PACK: Profile Analysis using Clustering and Kurtosis to find molecular classifiers in cancer. [My Copy] Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2269-2275. by A. E. Teschendorff, A. Naderi, N. L. Barbosa-Morais, C. Caldas posted to breastcancer clustering kurtosis microarray by macavity1g on 2007-03-12 01:37:22 as along with 2 people Scis0000002 jfr
	A mouse stromal response to tumor invasion predicts prostate and breast cancer patient survival. [My Copy] PloS one, Vol. 1 (2006) by Marina Bacac, Paolo Provero, Nathalie Mayran, Jean-Christophe C. Stehle, Carlo Fusco, Ivan Stamenkovic posted to breastcancer microarray by macavity1g on 2007-03-12 01:36:37 as along with 2 people jfr Ao_Li2007
	Computational exploration of the activated pathways associated with DNA damage response in breast cancer. [My Copy] Proteins, Vol. 65, No. 1. (1 October 2006), pp. 103-110. by L. Wen, W. Li, M. Sobel, J. A. Feng posted to breastcancer microarray by macavity1g on 2007-03-12 01:35:40 as along with 1 person jfr
	The molecular portraits of breast tumors are conserved across microarray platforms [My Copy] BMC Genomics, Vol. 7, No. 1. (2006), 96. by Zhiyuan Hu, Cheng Fan, Daniel Oh, et al.J. S. Marron, Xiaping He, Bahjat Qaqish, Chad Livasy, Lisa Carey, Evangeline Reynolds, Lynn Dressler, Andrew Nobel, Joel Parker, Matthew Ewend, Lynda Sawyer, Junyuan Wu, Yudong Liu, Rita Nanda, Maria Tretiakova, Alejandra Orrico, Donna Dreher, Juan Palazzo, Laurent Perreard, Edward Nelson, Mary Mone, Heidi Hansen, Michael Mullins, John Quackenbush, Matthew Ellis, Olufunmilayo Olopade, Philip Bernard, Charles Perou posted to breastcancer microarray by macavity1g on 2007-03-12 01:34:04 as along with 3 people giovenko frohike jfr
	Cancer classification and prediction using logistic regression with Bayesian gene selection. [My Copy] J Biomed Inform, Vol. 37, No. 4. (August 2004), pp. 249-259. by X. Zhou, K. Y. Liu, S. T. Wong posted to breastcancer logisticregression microarray by macavity1g on 2007-03-12 01:33:37 as along with 1 person rdiaz
	Prognostic meta-signature of breast cancer developed by two-stage mixture modeling of microarray data. [My Copy] BMC Genomics, Vol. 5, No. 1. (2004) by R. Shen, D. Ghosh, A. M. Chinnaiyan posted to breastcancer microarray by macavity1g on 2007-03-12 01:32:46 as along with 1 person Ao_Li2007
	Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e184-190. by Olivier Gevaert, Frank D. Smet, Dirk Timmerman, Yves Moreau, Bart D. Moor posted to bayesian breastcancer microarray network by macavity1g on 2007-03-12 01:32:11 as along with 7 people installe phoenixzxl jfr wnpx frohike welchr srp33
	Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 19. (11 September 2001), pp. 10869-10874. by T. Sørlie, C. M. Perou, R. Tibshirani, et al.T. Aas, S. Geisler, H. Johnsen, T. Hastie, M. B. Eisen, M. van de Rijn, S. S. Jeffrey, T. Thorsen, H. Quist, J. C. Matese, P. O. Brown, D. Botstein, P. Eystein Lønning, A. L. Børresen-Dale posted to breastcancer microarray by macavity1g on 2007-03-12 01:31:31 as along with 5 people Zephyrus windman83 jfr frohike evaf
	Nonparametric pathway-based regression models for analysis of genomic data. [My Copy] Biostatistics (13 June 2006) by Zhi Wei, Hongzhe Li posted to breastcancer microarray regression by macavity1g on 2007-03-12 01:31:11 as along with 3 people jfr waghsk ptrobajo
	Gene expression profiling predicts clinical outcome of breast cancer [My Copy] Nature, Vol. 415, No. 6871. (31 January 2002), pp. 530-536. by Laura J. van 't Veer, Hongyue Dai, Marc J. van de Vijver, et al.Yudong D. He, Augustinus A. M. Hart, Mao Mao, Hans L. Peterse, Karin van der Kooy, Matthew J. Marton, Anke T. Witteveen, George J. Schreiber, Ron M. Kerkhoven, Chris Roberts, Peter S. Linsley, Rene Bernards, Stephen H. Friend posted to breastcancer microarray by macavity1g on 2007-03-12 01:30:04 as along with 18 people and 3 groups tonamswish srp33 ipark-kaist kentz vertikalist gstiglic windman83 jfr tuck bedo giovanni Ao_Li2007 lyndon winterschlaefer Lara waghsk nedwards jo_davies BTS-PT-AS-CS Network Analysis of Genes Regulated in Renal Diseases GeschwindLab
	Singular value decomposition regression models for classification of tumors from microarray experiments. [My Copy] Pac Symp Biocomput (2002), pp. 18-29. by D. Ghosh posted to breastcancer microarray by macavity1g on 2007-03-12 01:29:27 as
	Gene expression profiling identifies molecular subtypes of inflammatory breast cancer. [My Copy] Cancer Res, Vol. 65, No. 6. (15 March 2005), pp. 2170-2178. by F. Bertucci, P. Finetti, J. Rougemont, et al.E. Charafe-Jauffret, N. Cervera, C. Tarpin, C. Nguyen, L. Xerri, R. Houlgatte, J. Jacquemier, P. Viens, D. Birnbaum posted to breastcancer microarray by macavity1g on 2007-03-12 01:29:07 as along with 1 person jfr
	Gene signature evaluation as a prognostic tool: challenges in the design of the MINDACT trial. [My Copy] Nat Clin Pract Oncol, Vol. 3, No. 10. (October 2006), pp. 540-551. by J. Bogaerts, F. Cardoso, M. Buyse, et al.S. Braga, S. Loi, J. A. Harrison, J. Bines, S. Mook, N. Decker, P. Ravdin, P. Therasse, E. Rutgers, L. J. van 't Veer, M. Piccart, posted to breastcancer microarray by macavity1g on 2007-03-12 01:28:46 as along with 3 people laral Ao_Li2007 lyndon
	Large scale data mining approach for gene-specific standardization of microarray gene expression data. [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2898-2904. by S. Yoon, Y. Yang, J. Choi, J. Seong posted to breastcancer microarray by macavity1g on 2007-03-12 01:28:09 as along with 3 people guhjy jfr shigepong
	Molecular classification and molecular forecasting of breast cancer: ready for clinical application? [My Copy] J Clin Oncol, Vol. 23, No. 29. (10 October 2005), pp. 7350-7360. by J. D. Brenton, L. A. Carey, A. A. Ahmed, C. Caldas posted to breastcancer microarray by macavity1g on 2007-03-12 01:27:42 as along with 2 people laral jfr
	Classification of human breast cancer using gene expression profiling as a component of the survival predictor algorithm. [My Copy] Clin Cancer Res, Vol. 10, No. 7. (1 April 2004), pp. 2272-2283. by G. V. Glinsky, T. Higashiyama, A. B. Glinskii posted to breastcancer microarray by macavity1g on 2007-03-12 01:27:15 as along with 3 people jfr Ao_Li2007 lyndon
	Semantic similarity measures as tools for exploring the gene ontology. [My Copy] Pac Symp Biocomput (2003), pp. 601-612. by P. W. Lord, R. D. Stevens, A. Brass, C. A. Goble posted to go microarray by macavity1g on 2007-03-12 01:25:36 as along with 9 people and 3 groups stefanorb irenas andytseng CitoJam ejmeij gaudan josemblazquez sgoetz pmidford dbk-lab ilps LanguageModeling
	Integrated analysis of gene expression by Association Rules Discovery. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by P. Carmona-Saez, M. Chagoyen, A. Rodriguez, O. Trelles, J. M. Carazo, A. Pascual-Montano posted to associationrules go microarray by macavity1g on 2007-03-12 01:24:56 as along with 3 people and 1 group oannes dps srp33 Regulomics_UCHSC

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microarray	49
breastcancer	26
go	22
geneticalgorithm	4
entropy	3
network	2
neuralnetwork	2
regression	2
associationrules	1
bayesian	1
clustering	1
cox	1
kurtosis	1
logisticregression	1
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snp	1
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