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macowell's library [130 articles]

Recent papers added to macowell's library ordered by importance.
  • Stability and reachability analysis of a hybrid model of luminescence in the marine bacterium Vibrio Fisheri
    (2001)
    by C Belta, J Schug, T Dang, V Kumar, G Pappas, H Rubin, P Dunlap
    posted to fulltext luxcdabe modeling by macowell on 2006-07-03 08:24:19 as ***** along with 1 group BUiGEM
  • Luminescence control in the marine bacterium Vibrio fischeri: an analysis of the dynamics of lux regulation
    Journal of Molecular Biology, Vol. 296, No. 4. (3 March 2000), pp. 1127-1137.
    by Sally James, Patric Nilsson, Geoffrey James, Staffan Kjelleberg, Torbjorn Fagerstrom
    posted to luxcdabe modeling by macowell on 2006-07-03 08:14:21 as ***** along with 1 group BUiGEM
  • DNA vaccine expressing conserved influenza virus proteins protective against H5N1 challenge infection in mice.
    Emerg Infect Dis, Vol. 8, No. 8. (August 2002), pp. 796-801.
    by SL Epstein, TM Tumpey, JA Misplon, CY Lo, LA Cooper, K Subbarao, M Renshaw, S Sambhara, JM Katz
    posted to h5n1 immunology by macowell on 2006-04-26 01:17:50 as ***** along with 1 group BUiGEM
  • The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys.
    Nature, Vol. 427, No. 6977. (26 February 2004), pp. 848-853.
    by M Stremlau, CM Owens, MJ Perron, M Kiessling, P Autissier, J Sodroski
    posted to genomics trim5-alpha by macowell on 2005-09-14 01:25:49 as ***** along with 1 group BUiGEM
  • MAGIC Tool: integrated microarray data analysis.
    Bioinformatics (28 January 2005)
    by L J J Heyer, D Z Z Moskowitz, J A A Abele, P Karnik, D Choi, A M M Campbell, E E E Oldham, B K K Akin
    posted to bioinformatics microarray by macowell on 2005-03-30 22:55:17 as ***** along with 2 people and 1 group davidbroadhurst florador BUiGEM
  • Mosses as model systems
    Trends in Plant Science, Vol. 2, No. 3. (March 1997), pp. 99-105.
    by David J Cove, Celia D Knight, Tilman Lamparter
    posted to physcomitrella teamexample by macowell on 2007-07-03 01:44:12 as **** along with 1 group BUiGEM
  • Visual Methods from Atoms to Cells
    Structure, Vol. 13, No. 3. (March 2005), pp. 347-354.
    by David S Goodsell
    posted to modeling molecular review visualization by macowell on 2006-12-19 19:09:17 as **** along with 1 group BUiGEM
  • Transcriptional regulation of bioluminesence genes from Vibrio fischeri.
    Mol Microbiol, Vol. 17, No. 5. (September 1995), pp. 801-812.
    by DM Sitnikov, JB Schineller, TO Baldwin
    posted to luxcdabe modeling by macowell on 2006-07-03 08:11:40 as **** along with 1 group BUiGEM
  • Clones of human ribosomal DNA containing the complete 18 S-rRNA and 28 S-rRNA genes. Characterization, a detailed map of the human ribosomal transcription unit and diversity among clones.
    Biochem J, Vol. 246, No. 2. (1 September 1987), pp. 519-527.
    by BE Maden, CL Dent, TE Farrell, J Garde, FS McCallum, JA Wakeman
    posted to fulltext genetics tattoo by macowell on 2006-04-27 23:07:16 as **** along with 1 person and 1 group mcox BUiGEM
  • Cloning and sequencing of a human 18S ribosomal RNA gene.
    DNA, Vol. 4, No. 4. (August 1985), pp. 283-291.
    by RM Torczynski, M Fuke, AP Bollon
    posted to genetics tattoo by macowell on 2006-04-27 23:00:55 as **** along with 1 group BUiGEM
  • The human 18S ribosomal RNA gene: evolution and stability.
    Am J Hum Genet, Vol. 38, No. 4. (April 1986), pp. 419-427.
    by IL Gonzalez, RD Schmickel
    posted to genetics tattoo by macowell on 2006-04-27 23:00:13 as **** along with 1 group BUiGEM
  • notes Hierarchical Bayes models for cDNA microarray gene expression
    Biostatistics, Vol. 6, No. 2. (April 2005), pp. 279-291.
    by Lonnstedt Ingrid
    posted to clustering by macowell on 2005-06-17 01:55:57 as **** along with 1 group BUiGEM
  • Detecting DNA regulatory motifs by incorporating positional trends in information content.
    Genome Biol, Vol. 5, No. 7. (2004)
    by KJ Kechris, E van Zwet, PJ Bickel, MB Eisen
    posted to bioinformatics clustering motifs by macowell on 2005-06-15 16:19:28 as **** along with 1 person and 1 group xili03 BUiGEM
  • notes POSaM: a fast, flexible, open-source, inkjet oligonucleotide synthesizer and microarrayer.
    Genome Biol, Vol. 5, No. 8. (2004)
    by C Lausted, T Dahl, C Warren, K King, K Smith, M Johnson, R Saleem, J Aitchison, L Hood, SR Lasky
    posted to microarray by macowell on 2005-05-17 21:44:41 as **** along with 1 group BUiGEM
  • notes A practical false discovery rate approach to identifying patterns of differential expression in microarray data.
    Bioinformatics (29 March 2005)
    by Gregory R R Grant, Junmin Liu, Christian J J Stoeckert
    posted to bioinformatics microarray open-source by macowell on 2005-04-17 20:57:01 as **** along with 1 group BUiGEM
  • The moss Physcomitrella patens.
    Annu Rev Genet, Vol. 39 (2005), pp. 339-358.
    by D Cove
    posted to physcomitrella teamexample by macowell on 2007-07-03 02:00:40 as *** along with 1 group BUiGEM
  • Efficient gene targeting in the moss Physcomitrella patens
    The Plant Journal, Vol. 11, No. 6. (1997), pp. 1195-1206.
    by Didier G Schaefer, Jean-Pierre Zryd
    posted to physcomitrella teamexample by macowell on 2007-07-03 01:52:00 as *** along with 1 group BUiGEM
  • In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment.
    Methods, Vol. 19, No. 3. (November 1999), pp. 425-433.
    by MH Kuo, CD Allis
    posted to chip genomics systems_biology by macowell on 2006-07-24 23:31:46 as *** along with 3 people and 2 groups royalzhang jtomasch Jporci Computational-Genomics BUiGEM
  • Network dynamics and cell physiology.
    Nat Rev Mol Cell Biol, Vol. 2, No. 12. (December 2001), pp. 908-916.
    by JJ Tyson, K Chen, B Novak
    posted to luxcdabe modeling review by macowell on 2006-07-03 08:39:41 as *** along with 7 people and 3 groups rklancer dbk bayesian sinister jbchang Evangelia grahamc streptomyces dbk-lab BUiGEM
  • Taming the Complexity of Biochemical Models through Bisimulation and Collapsing: Theory and Practice
    by M Antoniotti, B Mishra, C Piazza, A Policriti, M Simeoni
    posted to fulltext luxcdabe by macowell on 2006-07-03 08:23:13 as *** along with 1 group BUiGEM
  • Avian fluInfluenza virus receptors in the human airway
    Nature, Vol. 440, No. 7083. (22 March 2006), pp. 435-436.
    by Kyoko Shinya, Masahito Ebina, Shinya Yamada, Masao Ono, Noriyuki Kasai, Yoshihiro Kawaoka
    posted to h5n1 microbiology by macowell on 2006-04-14 05:39:44 as *** along with 1 person and 1 group fccoelho BUiGEM
  • Oseltamivir resistance--disabling our influenza defenses.
    N Engl J Med, Vol. 353, No. 25. (22 December 2005), pp. 2633-2636.
    by A Moscona
    posted to h5n1 microbiology by macowell on 2006-04-14 05:20:21 as *** along with 1 group BUiGEM
  • Concept of operations for triage of mechanical ventilation in an epidemic.
    Acad Emerg Med, Vol. 13, No. 2. (February 2006), pp. 223-229.
    by JL Hick, DT O'Laughlin
    posted to fulltext h5n1 microbiology by macowell on 2006-04-14 05:18:03 as *** along with 1 group BUiGEM
  • Vaccines against avian influenza--a race against time.
    N Engl J Med, Vol. 354, No. 13. (30 March 2006), pp. 1411-1413.
    by GA Poland
    posted to h5n1 microbiology by macowell on 2006-04-14 05:16:06 as *** along with 1 group BUiGEM
  • The origins of pandemic influenza--lessons from the 1918 virus.
    N Engl J Med, Vol. 353, No. 21. (24 November 2005), pp. 2209-2211.
    by RB Belshe
    posted to h5n1 microbiology by macowell on 2006-04-14 05:15:22 as *** along with 1 group BUiGEM
  • The effects of stochastic monopolar galvanic vestibular stimulation on human postural sway.
    J Vestib Res, Vol. 12, No. 2-3., pp. 77-85.
    by AP Scinicariello, JT Inglis, JJ Collins
    posted to gvs by macowell on 2005-10-25 12:36:04 as *** along with 1 group BUiGEM
  • Galvanic vestibular stimulation: new uses for an old tool.
    J Physiol, Vol. 517 ( Pt 3) (15 June 1999)
    by BL Day
    posted to fulltext gvs by macowell on 2005-09-23 00:51:03 as *** along with 1 group BUiGEM
  • notes The Network Society: A Cross-Cultural Perspective
    (30 July 2005)
    posted to cybersociology by macowell on 2005-09-22 23:02:59 as *** along with 3 people and 5 groups scholz akpe jjpeters ePortfolio distance Sociology BUiGEM MASSS
  • In defense of the cell: TRIM5alpha interception of mammalian retroviruses.
    Proc Natl Acad Sci U S A, Vol. 101, No. 29. (20 July 2004), pp. 10496-10497.
    by K Lee, VN KewalRamani
    posted to genomics trim5-alpha by macowell on 2005-09-14 01:19:43 as *** along with 1 group BUiGEM
  • Design principles for elementary gene circuits: Elements, methods, and examples.
    Chaos, Vol. 11, No. 1. (March 2001), pp. 142-159.
    by Michael A. A Savageau
    posted to systemsbiology by macowell on 2005-06-15 15:54:57 as *** along with 3 people and 1 group rklancer monod jjray BUiGEM
  • notes The Ames Salmonella/microsome mutagenicity assay.
    Mutat Res, Vol. 455, No. 1-2. (20 November 2000), pp. 29-60.
    by K Mortelmans, E Zeiger
    posted to class genetics by macowell on 2005-04-25 06:38:05 as *** along with 1 group BUiGEM
  • mRNA abundance changes during flagellar regeneration in Chlamydomonas reinhardtii.
    Mol Cell Biol, Vol. 4, No. 3. (March 1984), pp. 424-434.
    by JA Schloss, CD Silflow, JL Rosenbaum
    posted to chlamydomonas by macowell on 2005-04-03 20:40:55 as *** along with 1 group BUiGEM
  • Open source software for the analysis of microarray data.
    Biotechniques, Vol. Suppl (March 2003), pp. 45-51.
    by S Dudoit, RC Gentleman, J Quackenbush
    posted to bioinformatics microarray open-source review by macowell on 2005-03-30 22:58:27 as *** along with 4 people and 3 groups dbk mrm davidbroadhurst gupton streptomyces dbk-lab BUiGEM
  • notes Clustering Gene Expression Patterns
    Journal of Computational Biology, Vol. 6, No. 3/4. (1999), pp. 281-297.
    by Amir Ben-Dor, Ron Shamir, Zohar Yakhini
    posted to bioinformatics processing visualization by macowell on 2005-03-28 01:35:24 as *** along with 1 person and 1 group jiny BUiGEM
  • Using two-component systems and other bacterial regulatory factors for the fabrication of synthetic genetic devices
    Meth Enzymol, Vol. 422 (Jan 2007), pp. 488-512.
    by Alexander J Ninfa, Stephen Selinsky, Nicolas Perry, Stephen Atkins, Qi X Song, Avi Mayo, David Arps, Peter Woolf, Mariette R Atkinson
    posted to foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:59 as ** along with 1 person and 1 group grahamc BUiGEM
  • Directed evolution of Vibrio fischeri LuxR for increased sensitivity to a broad spectrum of acyl-homoserine lactones
    Mol Microbiol, Vol. 55, No. 3. (Feb 2005), pp. 712-23.
    by Cynthia H Collins, Frances H Arnold, Jared R Leadbetter
    posted to 4-butyrolactone bacterial directed evolution expression fischeri fluorescent gene genetic green models molecular mutagenesis mutation proteins regulation repressor signal site-directed trans-activators transcription transduction vibrio foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:59 as ** along with 1 group BUiGEM
  • From systems biology to synthetic biology
    Mol Syst Biol, Vol. 1 (Jan 2005)
    by George M Church
    posted to biological biology enhancement genetic models online systems foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:59 as ** along with 1 person and 1 group grahamc BUiGEM
  • Tuning genetic control through promoter engineering
    Proc Natl Acad Sci USA, Vol. 102, No. 36. (Sep 2005), pp. 12678-83.
    by Hal Alper, Curt Fischer, Elke Nevoigt, Gregory Stephanopoulos
    posted to bacterial cerevisiae coli engineering escherichia expression fungal gene genetic genetics library promoter regions regulation saccharomyces transcription foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:59 as ** along with 1 group BUiGEM
  • Gene regulation at the single-cell level
    Science, Vol. 307, No. 5717. (Mar 2005), pp. 1962-5.
    by Nitzan Rosenfeld, Jonathan W Young, Uri Alon, Peter S Swain, Michael B Elowitz
    posted to bacterial bacteriophage cell coli computer-assisted cycle dna-binding escherichia expression factors fluorescence fluorescent fusion gene genetic genetics green image lambda luminescent mathematics microscopy models processing promoter proteins recombinant regions regulation repressor signal transcription transduction viral foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:59 as ** along with 1 person and 1 group jjray BUiGEM
  • Synthetic promoter libraries--tuning of gene expression
    Trends Biotechnol, Vol. 24, No. 2. (Feb 2006), pp. 53-5.
    by Karin Hammer, Ivan Mijakovic, Peter R Jensen
    posted to engineering expression gene genetic genetics library promoter regions foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:59 as ** along with 1 group BUiGEM
  • The economics of synthetic biology
    Mol Syst Biol, Vol. 3 (Jan 2007)
    by Joachim Henkel, Stephen M Maurer
    posted to biology biotechnology engineering genetic policy registry synthetic foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:59 as ** along with 1 group BUiGEM
  • Biology by design: reduction and synthesis of cellular components and behaviour
    Journal of the Royal Society, Interface / the Royal Society, Vol. 4, No. 15. (Aug 2007), pp. 607-23.
    by Philippe Marguet, Frederick Balagadde, Cheemeng Tan, Lingchong You
    posted to foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:59 as ** along with 1 person and 1 group grahamc BUiGEM
  • Mammalian synthetic biology: Engineering of sophisticated gene networks
    J Biotechnol, Vol. 130, No. 4. (Jul 2007), pp. 329-45.
    by David Greber, Martin Fussenegger
    posted to foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:59 as ** along with 1 person and 1 group grahamc BUiGEM
  • Production of isoprenoid pharmaceuticals by engineered microbes
    Nat Chem Biol, Vol. 2, No. 12. (Dec 2006), pp. 674-81.
    by Michelle CY Chang, Jay D Keasling
    posted to cerevisiae coli design drug engineering escherichia genetic saccharomyces terpenes foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:58 as ** along with 1 group BUiGEM
  • Environmentally controlled invasion of cancer cells by engineered bacteria
    J Mol Biol, Vol. 355, No. 4. (Jan 2006), pp. 619-27.
    by Christopher J Anderson, Elizabeth J Clarke, Adam P Arkin, Christopher A Voigt
    posted to adhesins bacterial base cell coli count engineering escherichia expression fischeri gene genetic genetics humans hypoxia line neoplasms promoter proteins pseudotuberculosis regions regulation sequence tumor vectors vibrio yersinia foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:58 as ** along with 1 group BUiGEM
  • Engineering life: building a fab for biology
    Sci Am, Vol. 294, No. 6. (Jun 2006), pp. 44-51.
    by Bio FAB Group, David Baker, George Church, Jim Collins, Drew Endy, Joseph Jacobson, Jay Keasling, Paul Modrich, Christina Smolke, Ron Weiss
    posted to analysis array bacteria biotechnology coli dna electronics engineering escherichia genetic oligonucleotide pharmaceutical sequence technology therapeutics foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:58 as ** along with 2 people and 1 group grahamc antonkratz BUiGEM
  • The engineering of gene regulatory networks
    Annual review of biomedical engineering, Vol. 5 (Jan 2003), pp. 179-206.
    by Mads Kaern, William J Blake, JJ Collins
    posted to animals engineering expression gene genetic humans models processes protein regulation stochastic transcription foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:58 as ** along with 1 group BUiGEM
  • Combinatorial promoter design for engineering noisy gene expression
    Proc Natl Acad Sci USA, Vol. 104, No. 31. (Jul 2007), pp. 12726-31.
    by Kevin F Murphy, Gábor Balázsi, James J Collins
    posted to biology iettv logic synthetic transcription foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:58 as ** along with 1 group BUiGEM
  • Idempotent Vector Design for Standard Assembly of Biobricks
    MIT Synthetic Biology Working Group (Mar 2006)
    by Tom Knight
    posted to foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:58 as ** along with 1 person and 1 group grahamc BUiGEM
  • Deoxyribozymes that recode sequence information
    Nucleic Acids Res, Vol. 34, No. 8. (Jan 2006), pp. 2166-72.
    by Jeffrey J Tabor, Matthew Levy, Andrew D Ellington
    posted to acid activation allosteric base catalysis catalytic chain conformation dna domain engineering enzyme ligases nucleic oligonucleotides pairing polymerase protein reaction regulation sequence specificity substrate foundationalsb syntheticbiology by macowell on 2007-08-16 21:20:58 as ** along with 1 group BUiGEM
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