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macowell's watchlist [241 articles]

Recent papers matching macowell's watchlist criteria
  • Targeted development of registries of biological parts.
    PLoS ONE, Vol. 3, No. 7. (2008)
    by J Peccoud, MF Blauvelt, Y Cai, KL Cooper, O Crasta, EC DeLalla, C Evans, O Folkerts, BM Lyons, SP Mane, R Shelton, MA Sweede, SA Waldon
    posted to synthetic_biology by grahamc on 2008-08-12 20:11:41 as ** along with 2 people gulsacan austin
  • Protein fabrication automation.
    Protein Sci, Vol. 16, No. 3. (March 2007), pp. 379-390.
    by JC Cox, J Lape, MA Sayed, HW Hellinga
    posted to synthetic_biology by grahamc on 2008-08-12 20:08:48 as ** along with 2 people austin jyuh
  • Engineering BioBrick vectors from BioBrick parts.
    Journal of biological engineering, Vol. 2, No. 1. (2008)
    by RP Shetty, D Endy, TF Knight
    posted to synthetic_biology by grahamc on 2008-08-12 20:08:02 as ** along with 3 people austin j4murali jyuh
  • Synthetic Biology: Drawing a Line in Darwin's Sand
    Environmental Values, Vol. 17, No. 1. (February 2008), pp. 23-39.
    by Preston, J Christopher
    posted to synthetic_biology ethics by grahamc on 2008-08-12 20:05:03 as **
  • DNA polymerization on the inner surface of a giant liposome for synthesizing an artificial cell model
    Soft Matter, Vol. 2, No. 5. (2006), pp. 402-408.
    by Koh-Ichiroh Shohda, Tadashi Sugawara
    posted to synthetic_biology evolution by grahamc on 2008-08-12 20:03:21 as ** along with 1 person kevinchannon
  • Miniaturising the laboratory in emulsion droplets
    Trends in Biotechnology, Vol. 24, No. 9. (September 2006), pp. 395-402.
    by Andrew D Griffiths, Dan S Tawfik
    posted to synthetic_biology by grahamc on 2008-08-12 19:55:07 as ** along with 2 people and 2 groups dchughes kevinchannon G4ID Genetics-of-Gambling
  • Engineering modular protein interaction switches by sequence overlap.
    J Am Chem Soc, Vol. 129, No. 15. (18 April 2007), pp. 4606-4611.
    by NA Sallee, BJ Yeh, WA Lim
    posted to synthetic_biology protein-protein interactions by grahamc on 2008-08-12 19:53:48 as ** along with 1 person melting
  • Neutral lipid biosynthesis in engineered Escherichia coli: jojoba oil-like wax esters and fatty acid butyl esters.
    Applied and environmental microbiology, Vol. 72, No. 2. (February 2006), pp. 1373-1379.
    by R Kalscheuer, T Stöveken, H Luftmann, U Malkus, R Reichelt, A Steinbüchel
    posted to synthetic_biology metabolism by grahamc on 2008-08-12 19:52:04 as ** along with 1 person dbikard
  • Refinement and standardization of synthetic biological parts and devices
    Nat Biotech, Vol. 26, No. 7. (July 2008), pp. 787-793.
    by Barry Canton, Anna Labno, Drew Endy
    posted to synthetic_biology by grahamc on 2008-08-12 19:45:10 as ** along with 2 people austin marck
  • Life cycle of a minimal protocell--a dissipative particle dynamics study.
    Artif Life, Vol. 13, No. 4. (2007), pp. 319-345.
    by H Fellermann, S Rasmussen, HJ Ziock, RV Solé
    posted to synthetic_biology evolution by grahamc on 2008-08-12 19:43:40 as ** along with 1 person kevinchannon
  • Building a Parallel Metabolism within the Cell
    ACS Chem. Biol. (4 January 2008)
    by Aleksandra Filipovska, Oliver Rackham
    posted to synthetic_biology metabolism by grahamc on 2008-08-12 19:38:49 as ** along with 2 people austin dbikard
  • Expanding the metabolic engineering toolbox: more options to engineer cells.
    Trends Biotechnol, Vol. 25, No. 3. (March 2007), pp. 132-137.
    by KE Tyo, HS Alper, GN Stephanopoulos
    posted to synthetic_biology by grahamc on 2008-08-12 19:37:45 as ** along with 3 people austin cmmorel dbikard
  • Synthetic biology projects in vitro
    Genome Res., Vol. 17, No. 1. (1 January 2007), pp. 1-6.
    by Anthony C Forster, George M Church
    posted to synthetic_biology by grahamc on 2008-08-12 19:36:57 as ** along with 3 people kjedler austin Olaf_Ilzins
  • From Never Born Proteins to Minimal Living Cells: Two Projects in Synthetic Biology
    Origins of Life and Evolution of the Biosphere, Vol. 36, No. 5-6. (December 2006), pp. 605-616.
    by Luisi, Pier, Chiarabelli, Cristiano, Stano, Pasquale
    posted to synthetic_biology by grahamc on 2008-08-12 19:36:20 as ** along with 1 person dbikard
  • Synthetic Biology: Caught between Property Rights, the Public Domain, and the Commons.
    PLoS Biol, Vol. 5, No. 3. (13 March 2007)
    by Arti Rai, James Boyle
    posted to synthetic_biology by grahamc on 2008-08-12 19:34:58 as ** along with 1 person dbikard
  • Synthetic biology: enormous possibility, exaggerated perils.
    Journal of biological engineering, Vol. 2, No. 1. (25 April 2008)
    by Zachary N Russ
    posted to synthetic_biology by grahamc on 2008-08-12 19:34:20 as ** along with 1 person dbikard
  • Setting the standard in synthetic biology
    Nat Biotech, Vol. 26, No. 7. (July 2008), pp. 771-774.
    by Adam Arkin
    posted to synthetic_biology by grahamc on 2008-08-12 19:32:53 as ** along with 3 people austin dbikard marck
  • RNA and RNP as new molecular parts in synthetic biology
    Journal of Biotechnology, Vol. 132, No. 1. (15 October 2007), pp. 1-7.
    by Hirohide Saito, Tan Inoue
    posted to synthetic_biology by grahamc on 2008-08-12 19:31:44 as ** along with 2 people marck austin
  • Ribozymes, riboswitches and beyond: regulation of gene expression without proteins
    Nature Reviews Genetics, Vol. 8, No. 10. (11 September 2007), pp. 776-790.
    by Alexander Serganov, Dinshaw J Patel
    posted to synthetic_biology by grahamc on 2008-08-12 19:29:30 as ** along with 4 people and 3 groups austin dbikard jmrivort zwang G-quadruplex Supramolecular SynBioSys
  • Rapid and sensitive pollutant detection by induction of heat shock gene-bioluminescence gene fusions.
    Appl Environ Microbiol, Vol. 60, No. 5. (May 1994), pp. 1414-1420.
    by TK Van Dyk, WR Majarian, KB Konstantinov, RM Young, PS Dhurjati, RA LaRossa
    posted to synthetic_biology by grahamc on 2008-08-12 19:13:56 as ** along with 1 person and 1 group BUiGEM BUiGEM
  • Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops
    Science, Vol. 321, No. 5885. (4 July 2008), pp. 126-129.
    by Tony Y Tsai, Yoon S Choi, Wenzhe Ma, Joseph R Pomerening, Chao Tang, James E Ferrell
    posted to synthetic_biology oscillations networks by dbikard to the group SynBioSys on 2008-07-17 11:17:59 as ** along with 5 people kentsis Borelli madhadron stringertheory caseybrown
  • An Introduction to Systems Biology: Design Principles of Biological Circuits (Chapman & Hall/Crc Mathematical and Computational Biology Series)
    (07 July 2006)
    by Uri Alon
    posted to systems_approach synthetic_biology robustness response_time mathematical_model feedback design_principles biochemistry by jjray on 2008-07-16 16:31:47 as ** along with 7 people and 2 groups azazello aalibes balajis balicea mattjb fishtank akastrin ComplexAdaptiveSystems DSTO-CAS
  • Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells
    Genome Res. (15 May 2008), gr.072769.107.
    by Dan Xie, Jun Cai, Na-Yu Chia, Huck Ng, Sheng Zhong
    posted to synthetic_biology by phoenixzxl on 2008-07-16 07:29:32 as ** along with 5 people yoonk isimpson GustavoLacerda ihpark idonaldson
  • Engineering stochasticity in gene expression.
    Molecular bioSystems, Vol. 4, No. 7. (July 2008), pp. 754-761.
    by JJ Tabor, TS Bayer, ZB Simpson, M Levy, AD Ellington
    posted to synthetic_biology stochastic review gene_expression by jjray on 2008-06-25 15:24:51 as ** along with 1 person austin
  • Protein Design by Directed Evolution
    Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 153-173.
    by Christian Jackel, Peter Kast, Donald Hilvert
    posted to synthetic_biology review protein_design by phoenixzxl on 2008-06-25 08:26:36 as ** along with 1 person zwang
  • Design of Multi-Specificity in Protein Interfaces
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e164.
    by Elisabeth L Humphris, Tanja Kortemme
    posted to synthetic_biology specificity prediction_interface by phoenixzxl on 2008-06-23 11:03:15 as ** along with 6 people and 3 groups marck jwm bicko Einat dpollard Scis0000002 structural_bioinformatics Bioinformatics EisenLab
  • Redesigning enzymes based on adaptive evolution for optimal function in synthetic metabolic pathways.
    Chemistry & biology, Vol. 15, No. 6. (June 2008), pp. 607-618.
    by Y Yoshikuni, JA Dietrich, FF Nowroozi, PC Babbitt, JD Keasling
    posted to synthetic_biology metabolic_engineering by dbikard to the group SynBioSys on 2008-06-20 10:52:25 as ** along with 1 person grahamc
  • Implementing arithmetic and other analytic operations by transcriptional regulation.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by SM Cory, TJ Perkins
    posted to transcriptional_regulation synthetic_biology by jjray on 2008-06-02 21:29:10 as ** along with 4 people and 1 group dbikard eskay dquest maximilianh SynBioSys
  • Rational design of memory in eukaryotic cells.
    Genes Dev, Vol. 21, No. 18. (15 September 2007), pp. 2271-2276.
    by CM Ajo-Franklin, DA Drubin, JA Eskin, EP Gee, D Landgraf, I Phillips, PA Silver
    posted to synthetic_biology by dbikard to the group SynBioSys on 2008-06-02 10:20:01 as ** along with 4 people grahamc balabu austin cjeans
  • Enhancement of Cell Type Specificity by Quantitative Modulation of a Chimeric Ligand
    J. Biol. Chem., Vol. 283, No. 13. (28 March 2008), pp. 8469-8476.
    by Pablo Cironi, Ian A Swinburne, Pamela A Silver
    posted to synthetic_biology by dbikard on 2008-06-02 10:17:03 as **
  • Defossiling Fuel: How Synthetic Biology Can Transform Biofuel Production
    ACS Chem. Biol., Vol. 3, No. 1. (18 January 2008), pp. 13-16.
    by David Savage, , Jeffrey Way, Pamela A Silver
    posted to synthetic_biology by dbikard to the group SynBioSys on 2008-06-02 10:15:22 as ** along with 4 people grahamc austin cambray SciNika
  • Customized signaling with reconfigurable protein scaffolds
    Nature Biotechnology, Vol. 26, No. 5., pp. 526-528.
    by Patrick Guye, Ron Weiss
    posted to synthetic_biology by dbikard to the group SynBioSys on 2008-05-29 14:13:26 as ** along with 1 person grahamc
  • [The importance of synthetic biology.]
    Medecine sciences : M/S, Vol. 24, No. 5. (May 2008), pp. 447-448.
    by M Morange
    posted to synthetic_biology by dbikard on 2008-05-13 09:16:07 as **
  • [First French team success during iGEM Synthetic biology competition.]
    Medecine sciences : M/S, Vol. 24, No. 5. (May 2008), pp. 541-544.
    by David Bikard, François Képès,
    posted to synthetic_biology by dbikard on 2008-05-13 09:15:35 as **
  • Recursive construction of perfect DNA molecules from imperfect oligonucleotides.
    Molecular systems biology, Vol. 4 (2008)
    by G Linshiz, TB Yehezkel, S Kaplan, I Gronau, S Ravid, R Adar, E Shapiro
    posted to synthetic_biology by dbikard to the group SynBioSys on 2008-05-13 09:14:30 as ** along with 2 people and 1 group austin Ema Centre de Recherches Interdisciplinaires
  • The crucial role of CS in systems and synthetic biology
    Commun. ACM, Vol. 51, No. 5. (May 2008), pp. 15-18.
    by Jacques Cohen
    posted to systems_biology synthetic_biology by haiyeong on 2008-05-11 16:35:14 as read
  • Synthetic gene brushes: a structure-function relationship
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Amnon Buxboim, Shirley S Daube, Roy Bar-Ziv
    posted to synthetic_biology by phoenixzxl on 2008-04-21 03:14:46 as **
  • Genome Transplantation in Bacteria: Changing One Species to Another
    Science (28 June 2007), 1144622.
    by Carole Lartigue, John I Glass, Nina Alperovich, Rembert Pieper, Prashanth P Parmar, Hutchison, Hamilton O Smith, Craig J Venter
    posted to synthetic_biology by grahamc on 2008-03-28 17:32:16 as ** along with 8 people and 1 group jyuh operon madhadron yeastyboy zwang cabbagezs gulsacan westoll Bioinformatics
  • Complete Chemical Synthesis, Assembly, and Cloning of a Mycoplasma genitalium Genome
    Science (24 January 2008), 1151721.
    by Daniel G Gibson, Gwynedd A Benders, Cynthia Andrews-Pfannkoch, Evgeniya A Denisova, Holly Baden-Tillson, Jayshree Zaveri, Timothy B Stockwell, Anushka Brownley, David W Thomas, Mikkel A Algire, Chuck Merryman, Lei Young, Vladimir N Noskov, John I Glass, Craig J Venter, Clyde A Hutchison, Hamilton O Smith
    posted to minimal_cell synthetic_biology by grahamc on 2008-03-26 01:43:50 as ** along with 8 people austin operon neveaire zwang GeeSharpMinor lisa1 renatomilani kevinchannon
  • Synthetic genomes brought closer to life
    Nature Biotechnology, Vol. 26, No. 3., pp. 296-297.
    by Robert A Holt
    posted to synthetic_biology by grahamc on 2008-03-26 01:15:53 as **
  • Computational identification of obligatorily autocatalytic replicators embedded in metabolic networks
    Genome Biology, Vol. 9, No. 3. (2008)
    by Adam Kun, Balazs Papp, Eors Szathmary
    posted to metabolism synthetic_biology by grahamc on 2008-03-26 00:12:46 as ** along with 3 people fernan neils roys
  • Terpenoids: Opportunities for Biosynthesis of Natural Product Drugs Using Engineered Microorganisms.
    Mol Pharm (21 March 2008)
    by Parayil K Ajikumar, Keith Tyo, Simon Carlsen, Oliver Mucha, Too H Phon, Gregory Stephanopoulos
    posted to metabolic_engineering synthetic_biology terpenoids by dbikard on 2008-03-25 09:19:23 as ****
  • notes Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra
    Nature, Vol. 452, No. 7184. (13 March 2008), pp. 198-201.
    by Yu He, Tao Ye, Min Su, Chuan Zhang, Alexander E Ribbe, Wen Jiang, Chengde Mao
    posted to dna synthetic_biology by phoenixzxl on 2008-03-14 06:40:44 as ** along with 2 people dna melting
  • Designing biological systems.
    Genes Dev, Vol. 21, No. 3. (1 February 2007), pp. 242-254.
    by DA Drubin, JC Way, PA Silver
    posted to bioprogramming synthetic_biology by snowcrash on 2008-03-10 05:59:52 as *** along with 6 people and 1 group grahamc dbikard tmmurali choonpeng hslee jonsta247 SynBioSys
  • Simplicity in biology
    Nature, Vol. 446, No. 7135. (28 March 2007), pp. 497-497.
    by Uri Alon
    posted to synthetic_biology by Pascalichouchou on 2008-02-04 22:54:41 as ** along with 4 people and 2 groups nsamways taylan dbikard karfunkel Centre de Recherches Interdisciplinaires SynBioSys
  • Network motifs: theory and experimental approaches
    Nature Reviews Genetics, Vol. 8, No. 6., pp. 450-461.
    by Uri Alon
    posted to synthetic_biology by Pascalichouchou on 2008-02-04 22:54:14 as ** along with 14 people and 3 groups Borelli icases aalibes cmmorel jtaylor dbikard margaritis shigepong zwang grinfish xingxu karfunkel vietanh0 haarcuba TNT Centre de Recherches Interdisciplinaires SynBioSys
  • Enhancement of cellular memory by reducing stochastic transitions
    Nature, Vol. 435, No. 7039., pp. 228-232.
    by Murat Acar, Attila Becskei, Alexander v van Oudenaarden
    posted to memory noise synthetic_biology systems_biology by dbikard to the group SynBioSys on 2008-02-01 17:23:55 as *** along with 5 people rklancer crmind balicea mhucka kfm9876
  • Cost–benefit theory and optimal design of gene regulation functions
    Phys. Biol., Vol. 4, No. 4. (December 2007), 229.
    by Tomer Kalisky, Erez Dekel, Uri Alon
    posted to gene_regulation synthetic_biology by dbikard to the group SynBioSys on 2008-02-01 17:21:28 as ** along with 2 people jjray Pascalichouchou
  • Computational design of a biologically active enzyme.
    Science, Vol. 304, No. 5679. (25 June 2004), pp. 1967-1971.
    by MA Dwyer, LL Looger, HW Hellinga
    posted to protein_design synthetic_biology by dbikard to the group SynBioSys on 2008-01-31 19:32:45 as ** along with 3 people grahamc apaydin gane5h
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to expression_regulation promoter synthetic_biology by dbikard to the group SynBioSys on 2008-01-31 19:16:48 as *** along with 14 people and 1 group tresch Retchless tmmurali austin dpollard balicea kengg margaritis lusk cjeans zwang discreteonyxorb cabbagezs Ema EisenLab
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