madhadron's watchlist [more than 800 articles] Export

Recent papers matching madhadron's watchlist criteria

	Systems-level dynamic analyses of fate change in murine embryonic stem cells [My Copy] Nature, Vol. 462, No. 7271. (19 November 2009), pp. 358-362. by Rong Lu, Florian Markowetz, Richard D. Unwin, et al.Jeffrey T. Leek, Edoardo M. Airoldi, Ben D. MacArthur, Alexander Lachmann, Roye Rozov, Avi Ma/'ayan, Laurie A. Boyer, Olga G. Troyanskaya, Anthony D. Whetton, Ihor R. Lemischka posted to stem_cell dynamics differentiation by balabu on 2009-11-18 19:53:22 as along with 2 people and 1 group frohike pedrobeltrao Journal picks
	Live cell imaging distinguishes bona fide human iPS cells from partially reprogrammed cells [My Copy] Nat Biotech, Vol. 27, No. 11. (11 October 2009), pp. 1033-1037. by Elayne M. Chan, Sutheera Ratanasirintrawoot, In-Hyun Park, et al.Philip D. Manos, Yuin-Han Loh, Hongguang Huo, Justine D. Miller, Odelya Hartung, Junsung Rho, Tan A. Ince, George Q. Daley, Thorsten M. Schlaeger posted to stem_cell differentiation by balabu on 2009-11-06 20:00:40 as
	Spatial control of the energy metabolism of yeast cells through electrolytic generation of oxygen [My Copy] Phys. Biol., Vol. 6, No. 4. (December 2009), 046011. by Christian Warnke, Thomas Mair, Hartmut Witte, Antje Reiher, Marcus J. B. Hauser, Alois Krost
	Solenopsis ant magnetic material: statistical and seasonal studies [My Copy] Phys. Biol., Vol. 6, No. 4. (December 2009), 046012. by Leida G. Abracado, Darci M. S. Esquivel, Eliane Wajnberg
	Combinatorial binding predicts spatio-temporal cis-regulatory activity [My Copy] Nature, Vol. 462, No. 7269. (05 November 2009), pp. 65-70. by Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun, Eileen E. M. Furlong posted to regulatory_landscape development by balabu on 2009-11-05 13:53:55 as along with 10 people emptyhb toszko roys inesdesantiago fenghezi iskathy djkt megraw TRHvidsten pedrobeltrao
	Modeling species-specific diacylglycerol dynamics in the RAW 264.7 macrophage [My Copy] Journal of Theoretical Biology (31 October 2009) by Hannah L. Callender, Mary Ann Horn, Dianne L. DeCamp, Paul C. Sternweis, H. Alex Brown
	A quantitative theoretical model for the development of malignancy in ductal carcinoma in situ [My Copy] Journal of Theoretical Biology (31 October 2009) by Ariosto S. Silva, Robert A. Gatenby, Robert J. Gillies, Jose Andres Yunes
	Elastic energy storage in an unmineralized collagen type I molecular model with explicit solvation and water infiltration [My Copy] Journal of Theoretical Biology (28 October 2009) by Albert L. Kwansa, Joseph W. Freeman
	Modeling the role of IL-2 in the interplay between CD4+ helper and regulatory T cells: Assessing general dynamical properties [My Copy] Journal of Theoretical Biology (28 October 2009) by Karina García-Martínez, Kalet León
	Coexistence of mixotrophs, autotrophs, and heterotrophs in planktonic microbial communities [My Copy] Journal of Theoretical Biology (28 October 2009) by Kenneth W. Crane, James P. Grover
	The expression of the skeletal muscle force-length relationship in vivo: A simulation study [My Copy] Journal of Theoretical Biology (28 October 2009) by Samantha L. Winter, John H. Challis
	Physical limits of feedback noise-suppression in biological networks [My Copy] Phys. Biol., Vol. 6, No. 4. (December 2009), 046009. by Jiajun Zhang, Zhanjiang Yuan, Tianshou Zhou
	A model for signal transduction during quorum sensing in Vibrio harveyi. [My Copy] Physical biology, Vol. 6, No. 4. (2009) by Suman K. Banik, Andrew T. Fenley, Rahul V. Kulkarni posted by 1 person Winzer
	The cellular response to curvature-induced stress [My Copy] Phys. Biol., Vol. 6, No. 4. (December 2009), 046010. by Y. Y. Biton, S. A. Safran
	Successional state dynamics: A novel approach to modeling nonequilibrium foodweb dynamics [My Copy] Journal of Theoretical Biology (25 October 2009) by C. A. Klausmeier
	Geometry, thermodynamics, and protein [My Copy] Journal of Theoretical Biology (23 October 2009) by Yi Fang, Junmei Jing
	Anti-social cells: Predicting the influence of E-cadherin loss on the growth of epithelial cell populations [My Copy] Journal of Theoretical Biology (21 October 2009) by D. Walker, N. T. Georgopoulos, J. Southgate
	The evolution of phenotypic traits in a predator-prey system subject to Allee effect [My Copy] Journal of Theoretical Biology (21 October 2009) by Jian Zu, Masayasu Mimura, Joe Y. Wakano
	Identifying translation initiation sites in prokaryotes using support vector machine [My Copy] Journal of Theoretical Biology (17 October 2009) by Tingting Gao, Zhixia Yang, Yong Wang, Ling Jing
	A mathematical model of brain tumour response to radiotherapy and chemotherapy considering radiobiological aspects. [My Copy] Journal of Theoretical Biology (17 October 2009) by Lara Barazzuol, Neil G. Burnet, Raj Jena, Bleddyn Jones, Sarah J. Jefferies, Norman F. Kirkby
	Modelling contact spread of infection in host–parasitoid systems: Vertical transmission of pathogens can cause chaos [My Copy] Journal of Theoretical Biology (16 October 2009) by Katharine F. Preedy, Pietà G. Schofield, Sijia Liu, Anastasios Matzavinos, Mark A. J. Chaplain, Stephen F. Hubbard
	Parameter estimation and sensitivity analysis in an agent-based model of Leishmania major infection☆ [My Copy] Journal of Theoretical Biology (16 October 2009) by Garrett M. Dancik, Douglas E. Jones, Karin S. Dorman
	Expanding the scope of quantitative FRAP analysis [My Copy] Journal of Theoretical Biology (15 October 2009) by Mark A. Hallen, Anita T. Layton
	Signal propagation in small-world biological networks with weak noise [My Copy] Journal of Theoretical Biology (15 October 2009) by Dawei Hong, Shushuang Man
	Force-extension formula for the worm-like chain model from a variational principle [My Copy] Journal of Theoretical Biology (14 October 2009) by Yue Chan, Richard G. Haverkamp, James M. Hill
	Maximum likelihood estimation of the kinetics of receptor-mediated adhesion [My Copy] Journal of Theoretical Biology (14 October 2009) by Bilge Uz, Erdem Arslan, Ian J. Laurenzi
	Phenomenological modeling of tumor diameter growth based on a mixed effects model [My Copy] Journal of Theoretical Biology (14 October 2009) by T. Bastogne, A. Samson, P. Vallois, et al.S. Wantz-Mézières, S. Pinel, D. Bechet, M. Barberi-Heyob
	Accounting for mating pair formation in plasmid population dynamics [My Copy] Journal of Theoretical Biology (14 October 2009) by Xue Zhong, JarosŁaw E. Kro˙l, Eva M. Top, Stephen M. Krone
	DNA methylation is a guardian of stem cell self-renewal and multipotency [My Copy] Nat Genet, Vol. 41, No. 11. (01 November 2009), pp. 1164-1166. by Laurraine-Marcelle Gereige, Hanna K. A. Mikkola posted to stem_cell epigenetics by balabu on 2009-10-28 18:57:48 as
	Network Motifs: Simple Building Blocks of Complex Networks [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827. by R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, U. Alon posted to network by balabu on 2009-10-22 20:27:51 as along with 70 people and 10 groups Sergey_gerbek nurban ocs mjoach makrehchi schwartzjmc poirel tomhebbron arsyed vtraag sergiun fierykylin Akimasa operon dlobo daforerog chasmand wei_tang darian orahcio babakap brewbooks phoenixzxl Md_2007 mtagaya heliopais kaarsinogen galyardt cswinburne mullonc camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Evangelia roys tfogal zibuyu maralena stefanoallesina pbull cmor renatomilani shikin carlk applesnow subhacom i-stevenson ethkim complex networks GEB Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes GeneGo
	A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 442-446. by Paul J. Choi, Long Cai, Kirsten Frieda, X. Sunney Xie posted to noise by balabu on 2009-10-22 20:26:23 as along with 11 people and 1 group yyfwuhan pkm stasaki jbhiatt lflorez jonesn cactus alexknight margaritis jjray samjlord moernerlab
	Stochastic switching as a survival strategy in fluctuating environments [My Copy] Nat Genet, Vol. 40, No. 4. (April 2008), pp. 471-475. by Murat Acar, Jerome T. Mettetal, Alexander van Oudenaarden posted to oscillation noise by balabu on 2009-10-22 20:24:41 as along with 13 people and 1 group lbnc stefanjanusz A_Olympia operon jjray gokhan dbikard margaritis bootsy qwermish fjvico osilander brianb GEB
	Mathematics Is Biology's Next Microscope, Only Better; Biology Is Mathematics' Next Physics, Only Better [My Copy] PLoS Biol, Vol. 2, No. 12. (14 December 2004), e439. by Joel E. Cohen posted to philosophical by balabu on 2009-10-22 20:24:00 as along with 43 people and 14 groups pjmaybank pick600 jsvoboda tkf jorisslob arne beete rklancer BioGeek betainverse korakot cito pete hamish karbak A_Olympia beccaf22 rmj001 devin dsquared nozeresc DineshGaitonde macowell marimo bpb grzegorz cmmorel bayesian piscinero marcius eckart_bindewald eweaver wnpx dullhunk caporaso mmt xinian jrbanga bpcusack quianominorleo jn221 grahamc joseph_x_zhou dIEMoSIRIS Philosophy_of_Information Blog_and_Wiki_Research Fluid-Mechanics-and-Thermal-Science-Research MathBio EisenLab Computational_Systems_Biology XMLDataManagement biomedical-nlp BUiGEM BioinfoCIPF SGU-CIPF bioNetwork_sysBio biophysics
	Enhancement of cellular memory by reducing stochastic transitions [My Copy] Nature, Vol. 435, No. 7039., pp. 228-232. by Murat Acar, Attila Becskei, Alexander v. van Oudenaarden posted to noise network by balabu on 2009-10-22 20:23:01 as along with 7 people and 1 group jjray rklancer crmind balicea dbikard mhucka kfm9876 SynBioSys
	Programming gene expression with combinatorial promoters. [My Copy] Molecular systems biology, Vol. 3 (13 November 2007) by Robert Sidney S. Cox, Michael G. Surette, Michael B. Elowitz posted to synthetic network by balabu on 2009-10-22 20:22:25 as along with 16 people and 3 groups Synthetic_Biology_Literature Retchless tmmurali austin dpollard balicea kengg dbikard margaritis lusk cjeans zwang discreteonyxorb cabbagezs Ema tresch TranscriptionalRegulationWithThermodynamicModels EisenLab SynBioSys
	Coding-sequence determinants of gene expression in Escherichia coli. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5924. (10 April 2009), pp. 255-258. by Grzegorz Kudla, Andrew W. Murray, David Tollervey, Joshua B. Plotkin posted to translation by balabu on 2009-10-22 20:22:09 as along with 33 people and 1 group codonusage yyfwuhan dbikard kinestetika samgj dswan bpcusack emptyhb sameersoi dpsuslo8 anwazo Vincent_Rouilly kintoki erel10 michaelbarton fenghezi VGreiff ramanuja austin twatanab coela polivares rpatward lizbiogen jdbowes operon jasontsai absterga jbhiatt jjray kshundyak zwang friendpine BergmanLab
	Negative autoregulation speeds the response times of transcription networks. [My Copy] J Mol Biol, Vol. 323, No. 5. (8 November 2002), pp. 785-793. by N. Rosenfeld, M. B. Elowitz, U. Alon posted to network by balabu on 2009-10-22 20:20:33 as along with 5 people Antoine_Decrulle rklancer jjray bayesian margaritis
	A synthetic oscillatory network of transcriptional regulators. [My Copy] Nature, Vol. 403, No. 6767. (20 January 2000), pp. 335-338. by M. B. Elowitz, S. Leibler posted to synthetic by balabu on 2009-10-22 20:19:30 as along with 22 people and 1 group stharward dbikard dannya222 abhishek_tiwari adamnellis sjayanthi jasonpark1 cjryan ClaireFB mattions rklancer dgront sharatjv mhucka margaritis Grobi msuarezdiez tvdbulck austin jjray dagmar Borelli BP205
	Regulation of noise in the expression of a single gene. [My Copy] Nat Genet, Vol. 31, No. 1. (May 2002), pp. 69-73. by E. M. Ozbudak, M. Thattai, I. Kurtser, A. D. Grossman, A. van Oudenaarden posted to noise by balabu on 2009-10-22 20:19:11 as along with 14 people pkm roys rklancer rahmilale dbikard mhucka margaritis kfm9876 vladimirov jiny dylanwalker klo austin jjray
	Architecture-Dependent Noise Discriminates Functionally Analogous Differentiation Circuits [My Copy] Vol. 139, No. 3. (30 October 2009), pp. 512-522. by Tolga Çaatay, Marc Turcotte, Michael B. Elowitz, Jordi Garcia-Ojalvo, Gürol M. Süel posted to noise network differentiation by balabu on 2009-10-22 20:18:17 as along with 1 person mstumpf
	Protein interaction network analysis - Approach for potential drug target identification in Mycobacterium tuberculosis [My Copy] Journal of Theoretical Biology (13 October 2009) by Sandeep K. Kushwaha, Madhvi Shakya
	Mate choice and optimal search behavior: Fitness returns under the fixed sample and sequential search strategies [My Copy] Journal of Theoretical Biology (13 October 2009) by Daniel D. Wiegmann, Steven M. Seubert, Gordon A. Wade
	Computational analysis of phenotypic space in heterologous polyketide biosynthesis – applications to escherichia coli, Bacillus subtilis, and Saccharomyces cerevisiae [My Copy] Journal of Theoretical Biology (13 October 2009) by Brett A. Boghigian, Kyongbum Lee, Blaine A. Pfeifer
	Exponentially modified Gaussian (EMG) relevance to distributions related to cell proliferation and differentiation [My Copy] Journal of Theoretical Biology (13 October 2009) by A. Golubev
	Viruses are essential agents within the roots and stem of the tree of life [My Copy] Journal of Theoretical Biology (13 October 2009) by Luis P. Villarreal, Guenther Witzany
	Residence time and exposure time of sinking phytoplankton in the euphotic layer [My Copy] Journal of Theoretical Biology (13 October 2009) by Eric Delhez, Eric Deleersnijder
	A network model of successive partitioning-limited solute diffusion through the stratum corneum [My Copy] Journal of Theoretical Biology (13 October 2009) by Phillip Schumm, Caterina M. Scoglio, Deon van der Merwe
	A novel approach for large-scale polypeptide folding based on elastic networks using continuous optimization [My Copy] Journal of Theoretical Biology (13 October 2009) by Sourav Rakshit, G. K. Ananthasuresh
	Relatedness with different interaction configurations [My Copy] Journal of Theoretical Biology (13 October 2009) by Peter D. Taylor, A. Grafen
	Elucidation of T cell signalling models [My Copy] Journal of Theoretical Biology (13 October 2009) by Nick D. L. Owens, Jon Timmis, Andrew Greensted, Andy Tyrrell

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genetics	97
mtuberculosis	97
evolution	70
ecoli	68
mycobacteria	67
bacteria	59
newtrp	45
trp	45
antibiotics	42
coursework	37
quantum	34
epidemiology	32
noise	31
msmegmatis	28
protein	27
dna	23
persistersintuberculosis	22
trp3	21
metabolism	20
statistics	20
phylogeny	19
immunology	18
genetics_and_evolution2006	17
mathematics	17
microscopy	17
biophysics	16
cellcycle	16
experiment_and_theory_in_modern_biology2005	16
physics	16
protease	16
scerevisiae	16
thermodynamics	15
viruses	14
cell_wall	13
isoniazid	13
persistence	13
biology	11
enzymes	11
forchang	11
geneexpression	11
hiv	11
membrane	11
pathways	11
systemsbiology	11
cellwall	10
complexity	10
crystallography	10
gene_expression	10
growthrates	10
microfluidics	10
quantumcomputing	10
restriction	10
transcription	10
cell_cycle	9
cloning	9
functionalprogramming	9
lac_operon	9
microbiology	9
rna	9
bacterial_growth	8
entanglement	8
haskell	8
mrna	8
persisters	8
qcurriculum	8
rifampicin	8
statmech	8
tuberculosis	8
bsubtilis	7
electronics	7
fluorophores	7
history	7
phage	7
programming	7
randomprocesses	7
recombineering	7
spheroplasts	7
streptomycin	7
yeast	7
antibiotic_resistance	6
apobec	6
archaea	6
biochemical_and_biophysical_methods2005	6
celldeath	6
ecology	6
gene_networks	6
kinetic_proofreading	6
porins	6
protein_folding	6
radiolabelling	6
somatic_hypermutation	6
stressresponse	6
aging	5
computational_biology	5
drosophila	5
economics	5
ecori	5
human	5
human_genetics	5
imaging	5
microtubules	5
mleprae	5
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networks	5
nonequilibrium	5
publichealth	5
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review	5
stress	5
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categorytheory	4
computation	4
cyclins	4
electromagnetism	4
environmental	4
eukaryotes	4
fluorescence	4
ftsz	4
generalrelativity	4
heterogeneity	4
hot	4
information_theory	4
macrophages	4
meiosis	4
morphogenesis	4
mutation	4
mycolicacids	4
pathogenesis	4
pcr	4
plasmids	4
proteomics	4
protocols	4
quantum_mechanics	4
recombination	4
resistance	4
ribosome	4
secretion	4
stat_mech	4
stringtheory	4
techniques	4
archaeology	3
autolysin	3
biography	3
caulobacter	3
cdks	3
cell_surface	3
chaos	3
cholera	3
electrophysiology	3
ethambutol	3
fluorescentprobes	3
gametheory	3
genome	3
highthroughputgrowth	3
horizontal_gene_transfer	3
immunoglobulin	3
infection	3
in_vivo	3
lexa	3
malaria	3
math	3
mckinney_lab	3
measurement	3
membranetraffic	3
montecarlo	3
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mycodormancy	3
oceans	3
penicillin	3
persistors	3
populations	3
proteasome	3
rifampin	3
rtpcr	3
signal_transduction	3
spacetime	3
spinors	3
theoretical_biology	3
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water	3
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algebra	2
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bdellovibrio	2
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cell_free_system	2
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circadian_rhythms	2
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coxsackievirus	2
cytoskeleton	2
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dna_damage	2
domains	2
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elementary_flux_modes	2
endosomes	2
entropy	2
epigenetics	2
error_catastrophe	2
erythromycin	2
expression	2
fluidmechanics	2
fluids	2
fluorochrome	2
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fractals	2
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generalrelavitiy	2
geneticsandevolution2006	2
genetransfer	2
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pharmacodynamics	2
pharmacokinetics	2
poisson	2
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stochasticprocesses	2
strings	2
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textbooks	2
toxinantitoxin	2
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sar11	1
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sequencing	1
sex	1
simulation	1
singapore	1
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society	1
spaceelevator	1
speciation	1
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stochasticity	1
streptogramin	1
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structuredtreatment	1
styphimurium	1
su8	1
supercoiling	1
superconductors	1
swimming	1
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teaching	1
temperaturesensitivity	1
thermophiles	1
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tightjunction	1
tolllikereceptor	1
topology	1
translation	1
turgorpressure	1
twohybrid	1
ubiquitination	1
vaccines	1
vacuoles	1
vancomycin	1
virginiamycin	1
virologycourse	1
writing	1
yersiniapestis	1

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