mailund's library 72 articles Export

	Human-macaque comparisons illuminate variation in neutral substitution rates [My Copy] Genome Biology, Vol. 9 (30 April 2008), R76. by Svitlana Tyekucheva, Kateryna D. Makova, John E. Karro, Ross C. Hardison, Webb Miller, Francesca Chiaromonte posted to comparative-genomics by mailund on 2008-05-23 12:38:58 as
	Analysing georeferenced population genetics data with Geneland: a new algorithm to deal with null alleles and a friendly graphical user interface [My Copy] Bioinformatics, Vol. 24, No. 11. (1 June 2008), pp. 1406-1407. by Gilles Guillot, Filipe Santos, Arnaud Estoup posted to mcmc r by mailund on 2008-05-22 08:50:31 as along with 2 people guhjy DWisker
	MAMOT: Hidden MArkov MOdeling Tool. [My Copy] Bioinformatics (Oxford, England) (25 April 2008) by Frédéric Schütz, Mauro Delorenzi posted to hmm by mailund on 2008-05-21 17:49:38 as along with 2 people guhjy cabbagesofdoom
	The Impact of Recombination on Nucleotide Substitutions in the Human Genome [My Copy] PLoS Genetics by Laurent Duret, Peter Arndt posted to comparative-genomics genetics by mailund on 2008-05-20 16:36:45 as along with 2 people jasontsai djkt
	Bayesian Graphical Models for Genomewide Association Studies [My Copy] The American Journal of Human Genetics, Vol. 79, No. 1. (July 2006), pp. 100-112. by Claudio J. Verzilli, Nigel Stallard, John C. Whittaker posted to association-mapping by mailund on 2008-05-15 15:17:08 as
	Imputation-Based Analysis of Association Studies: Candidate Regions and Quantitative Traits [My Copy] PLoS Genetics, Vol. 3, No. 7. (2007) by Bertrand Servin, Matthew Stephens posted to association-mapping genetics imputation by mailund on 2008-05-08 19:05:02 as
	Fast and Accurate Estimation of the Population-Scaled Mutation Rate, theta, From Microsatellite Genotype Data [My Copy] Genetics, Vol. 176, No. 2. (1 June 2007), pp. 1363-1366. by Arindam Roychoudhury, Matthew Stephens posted to genetics by mailund on 2008-05-08 13:43:56 as along with 1 person druvus
	ConnectComplete A Markov Chain Monte Carlo Expectation Maximization Algorithm for Statistical Analysis of DNA Sequence Evolution with Neighbor-Dependent Substitution rates [My Copy] Journal of Computational and Graphical Statistics, Vol. 17, No. 1. (2008), pp. 1-25. by Asger Hobolth posted to comparative-genomics interaction sequence-analysis by mailund on 2008-05-02 17:37:24 as
	Exploiting Hardy-Weinberg Equilibrium for Efficient Screening of Single SNP Associations from Case-Control Studies [My Copy] Human Heredity, Vol. 63 (2007), pp. 196-204. by Jinbo Chen, Nilanja Chatterjee posted to association-mapping genetics population-genetics by mailund on 2008-04-24 11:02:51 as
	Bayesian models based on test statistics for multiple hypothesis testing problems. [My Copy] Bioinformatics (1 February 2008) by Yuan Ji, Yiling Lu, Gordon B B. Mills posted to no-tag by mailund on 2008-04-22 08:30:37 as along with 8 people guhjy jfr djkt shigepong GeeSharpMinor bertelsen maralena craigwilson06
	Disease association tests by inferring ancestral haplotypes using a hidden markov model [My Copy] Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 972-978. by Shu-Yi Su, David J. Balding, Lachlan J. Coin posted to association-mapping hmm by mailund on 2008-04-22 08:29:50 as along with 2 people renewang guhjy
	The effect of sequence quality on sequence alignment [My Copy] Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 897-900. by Ketil Malde posted to alignment by mailund on 2008-04-22 08:28:25 as along with 3 people n00c gjuggler niallhaslam
	Uncertainty in homology inferences: Assessing and improving genomic sequence alignment [My Copy] Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 298-309. by Gerton Lunter, Andrea Rocco, Naila Mimouni, Andreas Heger, Alexandre Caldeira, Jotun Hein posted to alignment statistical-alignment by mailund on 2008-04-08 10:26:40 as along with 8 people aprasad brant treangen djkt grahamc dandaman gjuggler AaronDarling
	Exploration of gene-gene interaction effects using entropy-based methods. [My Copy] European journal of human genetics : EJHG, Vol. 16, No. 2. (February 2008), pp. 229-235. by Changzheng Dong, Xun Chu, Ying Wang, et al.Yi Wang, Li Jin, Tieliu Shi, Wei Huang, Yixue Li posted to association-mapping data-mining interaction by mailund on 2008-04-08 09:45:41 as along with 1 person daforerog
	What Can Genome-Wide Association Studies Tell Us about the Genetics of Common Disease [My Copy] PLoS Genetics, Vol. 4, No. 2. by Mark M. Iles posted to association-mapping by mailund on 2008-04-08 09:44:20 as
	Bayesian inference of epistatic interactions in case-control studies [My Copy] Nat Genet, Vol. 39, No. 9. (26 August 2007), pp. 1167-1173. by Yu Zhang, Jun S. Liu posted to association-mapping interaction mcmc by mailund on 2008-04-08 09:43:17 as along with 4 people daed sameersoi guhjy zwang
	Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments [My Copy] Mol Biol Evol, Vol. 24, No. 6. (1 June 2007), pp. 1380-1383. by Giddy Landan, Dan Graur posted to alignment by mailund on 2008-03-23 13:40:27 as along with 9 people and 1 group treangen druvus aprasad rvosa BioNica stajich cjeans zwang lilou FAB-lab
	Power of genome-wide association studies in the presence of interacting loci. [My Copy] Genet Epidemiol (16 May 2007) by Joseph Pickrell, Françoise Clerget-Darpoux, Catherine Bourgain posted to association-mapping interaction by mailund on 2008-03-23 12:55:19 as along with 3 people and 1 group jessopher guhjy joepickrell Bioinformatics
	Estimating Local Ancestry in Admixed Populations [My Copy] American Journal of Human Genetics, Vol. 82, No. 2. (2008), pp. 290-303. by Sriram Sankararaman, Srinath Sridhar, Gad Kimmel, Eran Halperin posted to population-genetics by mailund on 2008-02-26 13:02:19 as
	Multifactor-Dimensionality Reduction Reveals High-Order Interactions among Estrogen-Metabolism Genes in Sporadic Breast Cancer [My Copy] American journal of human genetics, Vol. 69, No. 1. (2001), pp. 138-147. by Marylyn D. Ritchie, Lance W. Hahn, Nady Roodi, et al.Renee L. Bailey, William D. Dupont, Fritz F. Parl, Jason H. Moore posted to association-mapping by mailund on 2008-02-25 19:54:04 as
	PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses [My Copy] American Journal of Human Genetics, Vol. 81, No. 3. (2007), pp. 559-575. by Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, et al.Lori Thomas, Manuel A. R. Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I. W. de Bakker, Mark J. Daly, Pak C. Sham posted to association-mapping population-genetics by mailund on 2008-02-25 15:24:50 as
	Efficiency and power in genetic association studies [My Copy] Nat Genet, Vol. 37, No. 11. (23 November 2005), pp. 1217-1223. by Paul I. W. de Bakker, Roman Yelensky, Itsik Pe'er, Stacey B. Gabriel, Mark J. Daly, David Altshuler posted to association-mapping population-genetics by mailund on 2008-02-25 11:36:39 as along with 13 people and 2 groups arsyed maren ekostem Zephyrus misonneh pcahan1 tiago ashandanj giovanni debasis parkcc guhjy Ayest Bioinformatics GeschwindLab
	Haploview: analysis and visualization of LD and haplotype maps. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 2. (15 January 2005), pp. 263-265. by J. C. Barrett, B. Fry, J. Maller, M. J. Daly posted to association-mapping population-genetics software by mailund on 2008-02-25 11:29:49 as along with 4 people guhjy xingxu daforerog Ayest
	Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation [My Copy] Science, Vol. 319, No. 5866. (22 February 2008), pp. 1100-1104. by Jun Z. Li, Devin M. Absher, Hua Tang, et al.Audrey M. Southwick, Amanda M. Casto, Sohini Ramachandran, Howard M. Cann, Gregory S. Barsh, Marcus Feldman, Luigi L. Cavalli-Sforza, Richard M. Myers posted to population-genetics by mailund on 2008-02-24 12:58:08 as along with 14 people and 1 group psique ilyashl daforerog Zephyrus cgravlee echinotrix EsepBib ramensky zwang qwermish xingxu Dorkins adacier Archaeogenetics Roswell Cancer Crosstalk
	Genotype, haplotype and copy-number variation in worldwide human populations. [My Copy] Nature, Vol. 451, No. 7181. (21 February 2008), pp. 998-1003. by Mattias Jakobsson, Sonja W. Scholz, Paul Scheet, et al.J. Raphael Gibbs, Jenna M. VanLiere, Hon-Chung C. Fung, Zachary A. Szpiech, James H. Degnan, Kai Wang, Rita Guerreiro, Jose M. Bras, Jennifer C. Schymick, Dena G. Hernandez, Bryan J. Traynor, Javier Simon-Sanchez, Mar Matarin, Angela Britton, Joyce van de Leemput, Ian Rafferty, Maja Bucan, Howard M. Cann, John A. Hardy, Noah A. Rosenberg, Andrew B. Singleton posted to population-genetics by mailund on 2008-02-23 12:53:34 as along with 15 people and 2 groups misonneh vplagnol turnersd daforerog sameersoi psique ilyashl Zephyrus djkt ramensky thomaskelder Archaeogenetics jo_davies guhjy frohike Roswell Cancer Crosstalk Fasting, food and evolution
	Proportionally more deleterious genetic variation in European than in African populations [My Copy] Nature, Vol. 451, No. 7181. (21 February 2008), pp. 994-997. by Kirk E. Lohmueller, Amit R. Indap, Steffen Schmidt, et al.Adam R. Boyko, Ryan D. Hernandez, Melissa J. Hubisz, John J. Sninsky, Thomas J. White, Shamil R. Sunyaev, Rasmus Nielsen, Andrew G. Clark, Carlos D. Bustamante posted to no-tag by mailund on 2008-02-23 11:28:42 as along with 4 people and 1 group alexeid djkt caseybrown ramensky Fasting, food and evolution
	A new approach to estimate parameters of speciation models with application to apes [My Copy] Genome Res. (21 August 2007), gr.6409707. by Celine Becquet, Molly Przeworski posted to no-tag by mailund on 2008-02-18 20:47:45 as along with 2 people and 1 group ryanraaum dmc Durbin group
	Genomic Variability within an Organism Exposes Its Cell Lineage Tree. [My Copy] PLoS Comput Biol, Vol. 1, No. 5. (October 2005) by D. Frumkin, A. Wasserstrom, S. Kaplan, U. Feige, E. Shapiro posted to somatic-evolution by mailund on 2008-02-16 07:44:22 as along with 2 people setar jmeppley
	Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting [My Copy] PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e173. by Daniel A. Pollard, Venky N. Iyer, Alan M. Moses, Michael B. Eisen posted to coalescence-theory coalhmm by mailund on 2008-02-16 07:37:51 as along with 1 person aprasad
	Application of Ancestry Informative Markers to Association Studies in European Americans [My Copy] PLoS Genetics, Vol. 4, No. 1. (1 January 2008), e5. by Michael F. Seldin, Alkes L. Price posted to association-mapping by mailund on 2008-02-14 18:07:38 as
	AJHG - Pathway-Based Approaches for Analysis of Genomewide Association Studies [My Copy] American journal of human genetics, Vol. 81, No. 6. (December 2007), pp. 1278-1283. by Kai Wang, Mingyao Li, Maja Bucan posted to no-tag by mailund on 2008-02-14 18:00:24 as
	AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics [My Copy] Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 581-583. by Johan A. Nylander, James C. Wilgenbusch, Dan L. Warren, David L. Swofford posted to mcmc by mailund on 2008-02-14 17:43:38 as along with 2 people and 1 group aprasad stajich Mycology
	The SBML discrete stochastic models test suite [My Copy] Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 285-286. by Thomas W. Evans, Colin S. Gillespie, Darren J. Wilkinson posted to systems-biology by mailund on 2008-02-14 13:05:11 as along with 3 people tonamswish csgillespie Ema
	Association studies for untyped markers with TUNA [My Copy] Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 435-437. by Xiaoquan Wen, Dan L. Nicolae posted to association-mapping by mailund on 2008-02-01 06:33:52 as along with 1 person guhjy
	Mapping Human Genetic Ancestry [My Copy] Mol Biol Evol, Vol. 24, No. 10. (1 October 2007), pp. 2266-2276. by Ingo Ebersberger, Petra Galgoczy, Stefan Taudien, Simone Taenzer, Matthias Platzer, Arndt von Haeseler posted to comparative-genomics genetics phylogenetics by mailund on 2008-01-29 20:06:08 as along with 3 people aprasad dchughes ryanraaum
	Petri Net representations in systems biology. [My Copy] Biochem Soc Trans, Vol. 31, No. Pt 6. (December 2003), pp. 1513-1515. by J. W. Pinney, D. R. Westhead, G. A. McConkey posted to petri-nets systems-biology by mailund on 2008-01-28 19:09:41 as along with 2 people and 1 group camster wnpx dbk-lab
	Petri net-based method for the analysis of the dynamics of signal propagation in signaling pathways [My Copy] Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 209-217. by Simon Hardy, Pierre N. Robillard posted to petri-nets systems-biology by mailund on 2008-01-28 19:06:24 as along with 4 people kabookie guhjy bootsy biehl
	RReportGenerator: automatic reports from routine statistical analysis using R. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 2. (15 January 2008), pp. 276-278. by Wolfgang Raffelsberger, Yannick Krause, Luc Moulinier, et al.David Kieffer, Anne-Laure Morand, Laurent Brino, Olivier Poch posted to r by mailund on 2008-01-22 18:52:22 as along with 9 people daforerog bertelsen natstreet druvus guhjy jfr waszak maralena GeeSharpMinor
	Deja vu A Study of Duplicate Citations in Medline [My Copy] Bioinformatics (1 December 2007), btm574. by Mounir Errami, Justin M. Hicks, Wayne Fisher, et al.David Trusty, Jonathan D. Wren, Tara C. Long, Harold R. Garner posted to no-tag by mailund on 2008-01-20 12:17:36 as along with 6 people creswick guhjy lfriedl dullhunk Gaetan renatomilani
	On Recombination-Induced Multiple and Simultaneous Coalescent Events [My Copy] Genetics, Vol. 177, No. 4. (1 December 2007), pp. 2151-2160. by Joanna L. Davies, Frantisek Simancik, Rune Lyngso, Thomas Mailund, Jotun Hein posted to genetics by mailund on 2008-01-11 15:08:17 as along with 2 people renewang jo_davies
	GWAsimulator: a rapid whole-genome simulation program. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 1. (1 January 2008), pp. 140-142. by Chun Li, Mingyao Li posted to association-mapping software by mailund on 2008-01-11 09:42:56 as along with 3 people daforerog guhjy ryanraaum
	Pathway Approaches for Genomewide Studies [My Copy] American Journal of Human Genetics, Vol. 81, pp. 1278-1283. by Kai Wang, Mingyao Li, Maja Bucan posted to association-mapping by mailund on 2008-01-10 12:30:39 as
	SeqAn - An efficient, generic C++ library for sequence analysis [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Andreas Doring, David Weese, Tobias Rausch, Knut Reinert posted to comparative-genomics sequence-analysis software by mailund on 2008-01-10 10:34:18 as along with 15 people MarcelSchulz n00c druvus mmartin dquest daforerog groepl guhjy chad_davis laughcry ryanraaum nklee barriot magusina reyez
	Genome-wide identification of human functional DNA using a neutral indel model. [My Copy] PLoS computational biology, Vol. 2, No. 1. (13 January 2006) by Gerton Lunter, Chris P. Ponting, Jotun Hein posted to comparative-genomics by mailund on 2008-01-09 13:42:57 as along with 12 people and 2 groups timflutre gjuggler nklee aprasad eckart_bindewald eweaver lhonigberg acidwizard juliettecolinas bpcusack Stew cisevol EisenLab cis-regulatory-evolution
	Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes. [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007) by G. Lunter posted to comparative-genomics statistical-alignment by mailund on 2008-01-09 13:42:39 as along with 4 people and 1 group treangen aprasad AaronDarling elfar Bioinformatics
	A Fast and Flexible Statistical Model for Large-Scale Population Genotype Data: Applications to Inferring Missing Genotypes and Haplotypic Phase [My Copy] American Journal of Human Genetics, Vol. 78, No. 4. (2006), pp. 629-644. by Paul Scheet, Matthew Stephens posted to phasing by mailund on 2007-12-08 09:14:54 as along with 1 person hms
	A new multipoint method for genome-wide association studies by imputation of genotypes [My Copy] Nat Genet, Vol. 39, No. 7. (17 July 2007), pp. 906-913. by Jonathan Marchini, Bryan Howie, Simon Myers, Gil Mcvean, Peter Donnelly posted to association-mapping imputation by mailund on 2007-12-08 09:11:47 as along with 12 people mattwa daforerog maren floatingpoint xingxu jo_davies jdbowes guhjy balicea vplagnol hms dmc
	Genome-wide strategies for detecting multiple loci that influence complex diseases [My Copy] Nature Genetics, Vol. 37, No. 4. (27 March 2005), pp. 413-417. by Jonathan Marchini, Peter Donnelly, Lon R. Cardon posted to association-mapping interaction by mailund on 2007-12-08 09:08:22 as along with 7 people daed daforerog Zephyrus maren akmanning lp2 dmc
	Linkage disequilibrium mapping identifies a 390 kb region associated with CYP2D6 poor drug metabolising activity. [My Copy] Pharmacogenomics J, Vol. 2, No. 3. (2002), pp. 165-175. by L. K. Hosking, P. R. Boyd, C. F. Xu, et al.M. Nissum, K. Cantone, I. J. Purvis, R. Khakhar, M. R. Barnes, U. Liberwirth, K. Hagen-Mann, M. G. Ehm, J. H. Riley posted to association-mapping case-study by mailund on 2007-12-08 09:08:02 as
	Fine mapping of disease genes via haplotype clustering. [My Copy] Genet Epidemiol, Vol. 30, No. 2. (February 2006), pp. 170-179. by E. R. Waldron, J. C. Whittaker, D. J. Balding posted to association-mapping mcmc by mailund on 2007-12-08 09:07:46 as

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association-mapping	34
comparative-genomics	11
mcmc	9
genetics	7
population-genetics	7
hmm	5
interaction	5
alignment	3
coalescence-theory	3
data-mining	3
phylogenetics	3
software	3
systems-biology	3
algorithms	2
coalhmm	2
imputation	2
petri-nets	2
phasing	2
r	2
sequence-analysis	2
statistical-alignment	2
virus	2
arg	1
case-study	1
importance-sampling	1
somatic-evolution	1

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