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maralena's library [419 articles]

Recent papers added to maralena's library.
  • Identification of transcription factor contexts in literature using machine learning approaches.
    BMC bioinformatics, Vol. 9 Suppl 3 (2008)
    by H Yang, G Nenadic, JA Keane
    posted to tf text_mining machine_learning literature by maralena on 2008-05-12 13:09:29 as ** along with 1 person mariakmejia
  • Exploiting and integrating rich features for biological literature classification.
    BMC bioinformatics, Vol. 9 Suppl 3 (2008)
    by H Wang, M Huang, S Ding, X Zhu
    posted to text_mining literature classification by maralena on 2008-05-12 13:09:11 as ** along with 1 person mariakmejia
  • New challenges for text mining: mapping between text and manually curated pathways.
    BMC bioinformatics, Vol. 9 Suppl 3 (2008)
    by K Oda, JD Kim, T Ohta, D Okanohara, T Matsuzaki, Y Tateisi, J Tsujii
    posted to text_mining pathway by maralena on 2008-05-12 13:08:51 as ** along with 1 person mariakmejia
  • GraphFind: enhancing graph searching by low support data mining techniques.
    BMC bioinformatics, Vol. 9 Suppl 4 (2008)
    by A Ferro, R Giugno, M Mongiovì, A Pulvirenti, D Skripin, D Shasha
    posted to network graph data_mining by maralena on 2008-05-12 13:08:37 as **
  • RDFScape: Semantic Web meets systems biology.
    BMC bioinformatics, Vol. 9 Suppl 4 (2008)
    by A Splendiani
    posted to systems_biology semantic_web by maralena on 2008-05-12 13:07:09 as ** along with 1 person mariakmejia
  • Reconstructing networks of pathways via significance analysis of their intersections.
    BMC bioinformatics, Vol. 9 Suppl 4 (2008)
    by M Francesconi, D Remondini, N Neretti, JM Sedivy, LN Cooper, E Verondini, L Milanesi, G Castellani
    posted to significance pathway network by maralena on 2008-05-12 13:06:27 as **
  • Mapping proteins to disease terminologies: from UniProt to MeSH.
    BMC bioinformatics, Vol. 9 Suppl 5 (2008)
    by A Mottaz, YL Yip, P Ruch, AL Veuthey
    posted to mapping disease by maralena on 2008-05-12 13:05:43 as ** along with 1 person jyuh
  • Epigenetic regulation of protein-coding and microRNA genes by the Gfi1-interacting tumor suppressor PRDM5.
    Molecular and cellular biology, Vol. 27, No. 19. (October 2007), pp. 6889-6902.
    by Z Duan, RE Person, HH Lee, S Huang, J Donadieu, R Badolato, HL Grimes, T Papayannopoulou, MS Horwitz
    posted to prdm5 microrna gfi1 by maralena on 2008-05-09 16:25:27 as ** along with 1 person bootsy
  • MyoD inhibits Fstl1 and Utrn expression by inducing transcription of miR-206.
    J Cell Biol, Vol. 175, No. 1. (9 October 2006), pp. 77-85.
    by MI Rosenberg, SA Georges, A Asawachaicharn, E Analau, SJ Tapscott
    posted to utrn myod mir-206 microrna inhibition fstl1 by maralena on 2008-05-09 16:24:52 as ** along with 2 people bootsy mtagaya
  • Specific activation of microRNA-127 with downregulation of the proto-oncogene BCL6 by chromatin-modifying drugs in human cancer cells.
    Cancer Cell, Vol. 9, No. 6. (June 2006), pp. 435-443.
    by Y Saito, G Liang, G Egger, JM Friedman, JC Chuang, GA Coetzee, PA Jones
    posted to mir-127 microrna human cancer bcl6 by maralena on 2008-05-09 14:17:16 as ** along with 1 person mtagaya
  • MicroRNA-21 targets the tumor suppressor gene tropomyosin 1 (TPM1).
    J Biol Chem (15 March 2007)
    by Shuomin Zhu, Min-Liang L Si, Hailong Wu, Yin-Yuan Y Mo
    posted to tpm1 mir-21 microrna by maralena on 2008-05-09 13:33:58 as ** along with 1 person tardigrade
  • Involvement of Human Micro-RNA in Growth and Response to Chemotherapy in Human Cholangiocarcinoma Cell Lines.
    Gastroenterology, Vol. 130, No. 7. (June 2006), pp. 2113-2129.
    by F Meng, R Henson, M Lang, H Wehbe, S Maheshwari, JT Mendell, J Jiang, TD Schmittgen, T Patel
    posted to pten mir-21 microrna human cancer by maralena on 2008-05-09 13:32:04 as ** along with 3 people mtagaya mjbird jangmonim
  • Interleukin-6 dependent survival of multiple myeloma cells involves the Stat3-mediated induction of microRNA-21 through a highly conserved enhancer
    Blood, Vol. 110, No. 4. (15 August 2007), pp. 1330-1333.
    by Dennis Loffler, Katja Brocke-Heidrich, Gabriele Pfeifer, Claudia Stocsits, Jorg Hackermuller, Antje K Kretzschmar, Renate Burger, Martin Gramatzki, Conny Blumert, Kay Bauer, Helena Cvijic, Kerstin A Ullmann, Peter F Stadler, Friedemann Horn
    posted to stat3 mir-21 microrna il-6 enhancer cancer by maralena on 2008-05-09 09:39:52 as **
  • MicroRNA-21 targets tumor suppressor genes in invasion and metastasis.
    Cell Res (12 February 2008)
    by Shuomin Zhu, Hailong Wu, Fangting Wu, Daotai Nie, Shijie Sheng, Yin-Yuan Y Mo
    posted to tumor mir-21 microrna cancer by maralena on 2008-05-09 09:28:08 as ** along with 1 person eckart_bindewald
  • miR-21-mediated tumor growth
    Oncogene, Vol. aop, No. current.
    by ML Si, S Zhu, H Wu, Z Lu, F Wu, YY Mo,
    posted to tumor mir-21 microrna by maralena on 2008-05-09 09:26:32 as ** along with 1 person tardigrade
  • MicroRNA-21 (miR-21) post-transcriptionally downregulates tumor suppressor Pdcd4 and stimulates invasion, intravasation and metastasis in colorectal cancer
    Oncogene, Vol. aop, No. current.
    by IA Asangani, SAK Rasheed, DA Nikolova, JH Leupold, NH Colburn, S Post, H Allgayer
    posted to regulation pdcd4 mir-21 microrna cancer by maralena on 2008-05-09 09:22:32 as ** along with 2 people sandrapineau eckart_bindewald
  • miR-21 Gene Expression Triggered by AP-1 Is Sustained through a Double-Negative Feedback Mechanism
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by Shuji Fujita, Taiji Ito, Taketoshi Mizutani, Shigeru Minoguchi, Nobutake Yamamichi, Kouhei Sakurai, Hideo Iba
    posted to mir-21 microrna feedback ap-1 by maralena on 2008-05-09 09:19:18 as ** along with 1 person Alexander_Kanitz
  • Silencing of microRNAs in vivo with ‘antagomirs’
    Nature (30 October 2005)
    by Jan Krützfeldt, Nikolaus Rajewsky, Ravi Braich, Kallanthottathil G Rajeev, Thomas Tuschl, Muthiah Manoharan, Markus Stoffel
    posted to silencing microrna by maralena on 2008-05-09 09:01:04 as ** along with 3 people and 1 group jyuh andersbj heliopais microRNA
  • MicroRNA-21 is an antiapoptotic factor in human glioblastoma cells.
    Cancer Res, Vol. 65, No. 14. (15 July 2005), pp. 6029-6033.
    by JA Chan, AM Krichevsky, KS Kosik
    posted to mir-21 microrna apoptosis anti by maralena on 2008-05-09 08:52:29 as ** along with 2 people eckart_bindewald mtagaya
  • miR-15 and miR-16 induce apoptosis by targeting BCL2.
    Proc Natl Acad Sci U S A, Vol. 102, No. 39. (27 September 2005), pp. 13944-13949.
    by A Cimmino, GA Calin, M Fabbri, MV Iorio, M Ferracin, M Shimizu, SE Wojcik, RI Aqeilan, S Zupo, M Dono, L Rassenti, H Alder, S Volinia, CG Liu, TJ Kipps, M Negrini, CM Croce
    posted to mir-16 mir-15 microrna bcl2 apoptosis by maralena on 2008-05-09 08:48:14 as ** along with 2 people ea mtagaya
  • Inferring the role of transcription factors in regulatory networks
    BMC Bioinformatics, Vol. 9 (06 May 2008), 228.
    by Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel
    posted to tf regulatory network by maralena on 2008-05-09 07:52:22 as ** along with 3 people idonaldson heliopais renatomilani
  • GraphWeb: mining heterogeneous biological networks for gene modules with functional significance.
    Nucleic acids research (6 May 2008)
    by Jüri Reimand, Laur Tooming, Hedi Peterson, Priit Adler, Jaak Vilo
    posted to network module functional by maralena on 2008-05-09 07:52:09 as ** along with 3 people jyuh shigepong pinney
  • Comparative Sequence Analysis Reveals an Intricate Network Among REST, CREB and miRNA in Mediating Neuronal Gene Expression
    Genome Biology, Vol. 7 (26 September 2006), R85.
    by Jie Wu, Xiaohui Xie
    posted to rest mir-9 mir-132 mir-124a microrna creb by maralena on 2008-05-08 16:32:22 as ** along with 2 people and 1 group diancu heliopais microRNA
  • The microRNA miR-124 antagonizes the anti-neural REST/SCP1 pathway during embryonic CNS development
    Genes Dev., Vol. 21, No. 7. (1 April 2007), pp. 744-749.
    by Jaya Visvanathan, Seunghee Lee, Bora Lee, Jae W Lee, Soo-Kyung Lee
    posted to scp1 rest mir-124 microrna by maralena on 2008-05-08 14:36:50 as **
  • Combinatorial microRNA target predictions
    Nature Genetics, Vol. 37, No. 5. (03 April 2005), pp. 495-500.
    by Azra Krek, Dominic Grün, Matthew N Poy, Rachel Wolf, Lauren Rosenberg, Eric J Epstein, Philip Macmenamin, Isabelle d da Piedade, Kristin C Gunsalus, Markus Stoffel, Nikolaus Rajewsky
    posted to target prediction mir-124a microrna by maralena on 2008-05-08 14:32:36 as ** along with 9 people and 1 group tmmurali textoris jfr eckart_bindewald tardigrade mtagaya feipan lp2 heliopais microRNA
  • From The Cover: A cAMP-response element binding protein-induced microRNA regulates neuronal morphogenesis
    Proceedings of the National Academy of Sciences, Vol. 102, No. 45. (8 November 2005), pp. 16426-16431.
    by Ngan Vo, Matthew E Klein, Olga Varlamova, David M Keller, Tadashi Yamamoto, Richard H Goodman, Soren Impey
    posted to tf p250gap neurotrophins mir-132 microrna creb by maralena on 2008-05-08 14:04:23 as **
  • Differential isoform expression and interaction with the P32 regulatory protein controls the subcellular localization of the splicing factor U2AF26.
    The Journal of biological chemistry (6 May 2008)
    by Florian Heyd, Maria Carmo-Fonseca, Tarik Moroy
    posted to no-tag by maralena on 2008-05-08 13:51:59 as **
  • The role of microRNA in the delayed negative feedback regulation of gene expression.
    Biochem Biophys Res Commun, Vol. 358, No. 3. (6 July 2007), pp. 722-726.
    by ZR Xie, HT Yang, WC Liu, MJ Hwang
    posted to microrna by maralena on 2008-05-08 13:01:17 as ** along with 4 people jyuh tardigrade bootsy Hank
  • MicroRNA profiling of developing and regenerating pancreas reveal post-transcriptional regulation of neurogenin3
    Developmental Biology, Vol. 311, No. 2. (15 November 2007), pp. 603-612.
    by Mugdha V Joglekar, Vishal S Parekh, Sameet Mehta, Ramesh R Bhonde, Anandwardhan A Hardikar
    posted to pancreas ngn3 mir-195 mir-16 mir-15b mir-15a by maralena on 2008-05-08 12:59:38 as **
  • Co-regulation of Gremlin and Notch signalling in diabetic nephropathy.
    Biochim Biophys Acta (11 October 2007)
    by David W W Walsh, Sarah A A Roxburgh, Paul McGettigan, Celine C C Berthier, Desmond G G Higgins, Matthias Kretzler, Clemens D D Cohen, Sergio Mezzano, Derek P P Brazil, Finian Martin
    posted to signalling pathway notch microrna gremlin by maralena on 2008-05-08 12:56:39 as ** along with 1 person jyuh
  • The expression of microRNA (miRNA) mir-23a and 23b and their target gene, CYP19A1 (aromatase) in follicular cells obtained from women undergoing ART
    Fertility and Sterility, Vol. 88, No. Supplement 1. (September 2007), pp. S166-S167.
    by C Alford, T Toloubeydokhti, Y Al-Katanani, KC Drury, R Williams, N Chenini
    posted to mir-23b mir-23a microrna cyp19a1 by maralena on 2008-05-08 12:54:37 as **
  • The expression of microRNA (miRNA), mir-17, mir-211 and mir-542 and their target genes, StAR, IL-1b and Cox2 in follicular cells derived from women undergoing ART
    Fertility and Sterility, Vol. 88, No. Supplement 1. (September 2007), pp. S165-S166.
    by T Toloubeydokhti, C Alford, Y Al-Katanani, X Luo, RS Williams, C Nasser
    posted to star mir-542 mir-211 mir-17 microrna il-1b cox2 by maralena on 2008-05-08 12:54:00 as **
  • Post-transcriptional regulation of the Brn-3b transcription factor in differentiating neuroblastoma cells
    FEBS Letters, Vol. 581, No. 13. (29 May 2007), pp. 2490-2496.
    by Mattia Calissano, James K Diss, David S Latchman
    posted to tf mir-23 mir-214 microrna brn-3b by maralena on 2008-05-08 12:52:40 as **
  • MiR-150 Controls B Cell Differentiation by Targeting the Transcription Factor c-Myb
    Cell, Vol. 131, No. 1. (5 October 2007), pp. 146-159.
    by Changchun Xiao, Dinis P Calado, Gunther Galler, To-Ha Thai, Heide C Patterson, Jing Wang, Nikolaus Rajewsky, Timothy P Bender, Klaus Rajewsky
    posted to tf mir-150 lymphocyte c-myb by maralena on 2008-05-08 12:50:12 as **
  • microRNA-155 Regulates the Generation of Immunoglobulin Class-Switched Plasma Cells
    Immunity, Vol. In Press, Corrected Proof
    by Elena Vigorito, Kerry L Perks, Cei Abreu-Goodger, Sam Bunting, Zou Xiang, Susan Kohlhaas, Partha P Das, Eric A Miska, Antony Rodriguez, Allan Bradley, Kenneth G Smith, Cristina Rada, Anton J Enright, Kai-Michael Toellner, Ian C Maclennan, Martin Turner
    posted to pu1 mir-155 igg1 bic b_cell by maralena on 2008-05-08 12:48:49 as ** along with 2 people and 1 group heliopais Alexander_Kanitz microRNA
  • Tac1 regulation by RNA-binding protein and miRNA in bone marrow stroma: Implication for hematopoietic activity
    Brain, Behavior, and Immunity, Vol. 22, No. 4. (May 2008), pp. 442-450.
    by Raghav G Murthy, Steven J Greco, Marcelo Taborga, Nitixa Patel, Pranela Rameshwar
    posted to tac1 stemcell microrna hematopoiesis by maralena on 2008-05-08 12:44:45 as **
  • MicroRNAs and cancer
    Seminars in Cancer Biology, Vol. 13, No. 4. (August 2003), pp. 253-258.
    by Michael T Mcmanus
    posted to microrna cancer by maralena on 2008-05-08 12:40:42 as **
  • MicroRNA-155 function in B Cells.
    Immunity, Vol. 27, No. 6. (December 2007), pp. 825-827.
    by K Calame
    posted to mir-155 cell b by maralena on 2008-05-08 12:38:41 as ** along with 1 person sandrapineau
  • 507 ROLE OF MIR-21 IN REGENERATING RAT LIVER
    Journal of Hepatology, Vol. 48, No. Supplement 2. (2008), pp. S191-S192.
    by RE Castro, DM Santos, Y Zeng, CJ Steer, CM Rodrigues, BT Kren
    posted to rat mir-21 liver by maralena on 2008-05-08 12:37:08 as **
  • 105 THE MICRORNA MIR-122 IS SUPPRESSED IN NONALCOHOLIC STEATOHEPATITIS: IMPLICATIONS FOR PATHOGENESIS
    Journal of Hepatology, Vol. 48, No. Supplement 2. (2008), pp. S47-S47.
    by O Cheung, P Puri, C Eicken, MJ Contos, F Mirshahi, J Maher, J Kellum, VA Luketic, AJ Sanyal
    posted to mir-122 microrna by maralena on 2008-05-08 12:34:55 as **
  • Su.91. miR-155 is Upregulated by HMGB1 in MEF-Derived Damage Associated Molecular Pattern Molecules [DAMPs]
    Clinical Immunology, Vol. 127, No. Supplement 1. (2008), pp. S154-S154.
    by Sebnem Unlu, Herbert Zeh, Michael Lotze
    posted to su91 mir-155 microrna mef hmgb1 by maralena on 2008-05-08 12:34:30 as **
  • Members of the miRNA-200 family regulate olfactory neurogenesis.
    Neuron, Vol. 57, No. 1. (10 January 2008), pp. 41-55.
    by PS Choi, L Zakhary, WY Choi, S Caron, E Alvarez-Saavedra, EA Miska, M McManus, B Harfe, AJ Giraldez, RH Horvitz, AF Schier, C Dulac
    posted to olfactory neurogenesis mir-200 family by maralena on 2008-05-08 12:28:24 as ** along with 1 person eckart_bindewald
  • Coordinated expression of microRNA-155 and predicted target genes in diffuse large B-cell lymphoma.
    Cancer genetics and cytogenetics, Vol. 181, No. 1. (February 2008), pp. 8-15.
    by D Rai, S Karanti, I Jung, PL Dahia, RC Aguiar
    posted to nf_kappab mir-155 lymphoma by maralena on 2008-05-08 12:26:06 as ** along with 1 person sandrapineau
  • THE MIR-15A/MIR-16-1 CLUSTER CONTROLS PROSTATE CANCER PROGRESSION BY TARGETING MULTIPLE ONCOGENIC ACTIVITIES
    European Urology Supplements, Vol. 7, No. 3. (March 2008), pp. 271-271.
    by D Bonci, V Coppola, M Musumeci, A Addario, L D'Urso, D Collura, C Peschle, R De Maria, G Muto
    posted to mir-16-1 mir-15a cluster cancer by maralena on 2008-05-08 12:22:14 as **
  • MicroRNA-206: The skeletal muscle-specific myomiR
    Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Vol. In Press, Corrected Proof
    by John J Mccarthy
    posted to muscle-specific mir-206 by maralena on 2008-05-08 12:19:57 as **
  • MIR-125b INDUCES ANDROGEN-INDEPENDENT GROWTH OF PROSTATE CANCER CELLS
    The Journal of Urology, Vol. 179, No. 4, Supplement 1. (April 2008), pp. 186-187.
    by Xu-Bao Shi, Lingru Xue, Joy Yang, Christopher P Evans, Devere
    posted to mir-125b cancer by maralena on 2008-05-08 12:18:56 as **
  • A MUTANT ALLELE IN A miR-181 BINDING-SITE OF THE MEL-18 GENE IS ASSOCIATED WITH A POOR PROGNOSIS IN PROSTATE CANCER
    The Journal of Urology, Vol. 179, No. 4, Supplement 1. (April 2008), pp. 104-104.
    by Wang Wei, Takeshi Yuasa, Norihiko Tsuchiya, Teruaki Kumazawa, Takashi Obara, Hiroshi Tsuruta, Takamitsu Inoue, Zhiyong Ma, Shigeru Satroh, Tomonori Habuchi
    posted to mutation mir-181 mel-18 cancer by maralena on 2008-05-08 12:18:23 as **
  • The role MiR-328 in atrial fibrillation via repressing caveolin-3 expression
    Journal of Molecular and Cellular Cardiology, Vol. 44, No. 4. (April 2008), pp. 736-736.
    by YJ Lu, Y Zhang, N Wang, ZW Pan, BF Yang
    posted to mir-328 by maralena on 2008-05-08 12:17:52 as **
  • miR-125b inhibits osteoblastic differentiation by down-regulation of cell proliferation
    Biochemical and Biophysical Research Communications, Vol. In Press, Uncorrected Proof
    by Yosuke Mizuno, Ken Yagi, Yoshimi Tokuzawa, Yukiko Kanesaki-Yatsuka, Tatsuo Suda, Takenobu Katagiri, Toru Fukuda, Masayoshi Maruyama, Akihiko Okuda, Tomoyuki Amemiya, Yasumitsu Kondoh, Hideo Tashiro, Yasushi Okazaki
    posted to proliferation mir-125b cell by maralena on 2008-05-08 12:17:09 as ** along with 1 person and 1 group heliopais microRNA
  • MiR-221 regulates p27/kip1 in hepatocellular carcinoma
    Digestive and Liver Disease, Vol. 40, No. 5. (May 2008), pp. A11-A11.
    by F Fornari, L Gramantieri, M Ferracin, S Sabbioni, A Veronese, C Giovannini, M Galassi, GL Grazi, M Negrini, L Bolondi
    posted to p27 mir-221 kip1 cancer by maralena on 2008-05-08 12:15:28 as **
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