maralena's network [90 articles] Export

Recent papers added to maralena's library classified by the tag network. You can also see everyone's network.

	High-Quality Binary Protein Interaction Map of the Yeast Interactome Network [My Copy] Science, Vol. 322, No. 5898. (3 October 2008), pp. 104-110. by Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, et al.Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E. Hill, Marc Vidal posted to network ppi yeast by maralena on 2008-08-25 09:19:46 as along with 28 people and 1 group icecrown aceol mgomes nzm pauldobson cabbagezs mariap3636 semin roys phoenixzxl kintoki jbhiatt elenaz jfr ocs cerca ptrobajo carlk zwang gracio reyez mdperry dullhunk Petersarkies grahamc yeastyboy guhjy neils BenosLab
	Characterization of microRNA-regulated protein-protein interaction network. [My Copy] Proteomics, Vol. 8, No. 10. (19 May 2008), pp. 1975-1979. by Chun-Wei W. Hsu, Hsueh-Fen F. Juan, Hsuan-Cheng C. Huang posted to microrna network ppi by maralena on 2008-08-19 09:42:42 as along with 3 people jfr cabbagesofdoom daforerog
	Epigenetic Mechanisms and Gene Networks in the Nervous System [My Copy] J. Neurosci., Vol. 25, No. 45. (9 November 2005), pp. 10379-10389. by Christine M. Colvis, Jonathan D. Pollock, Richard H. Goodman, et al.Soren Impey, John Dunn, Gail Mandel, Frances A. Champagne, Mark Mayford, Edward Korzus, Arvind Kumar, William Renthal, David E. Theobald, Eric J. Nestler posted to epigenetic gene nervous network by maralena on 2008-08-19 09:36:59 as
	Mapping of genetic and epigenetic regulatory networks using microarrays. [My Copy] Nat Genet, Vol. 37 Suppl (June 2005) by B. van Steensel posted to epigenetic network regulatory by maralena on 2008-08-19 09:33:55 as along with 2 people suizifish textoris
	Survival of the sparsest: robust gene networks are parsimonious [My Copy] Mol Syst Biol, Vol. 4 (2008) by Robert D. Leclerc posted to gene network by maralena on 2008-08-18 08:42:19 as along with 8 people and 1 group mjoach josedavid sg45653 Borelli bootsy Retchless bpcusack reyez GEB
	SIRENE: supervised inference of regulatory networks. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by F. Mordelet, J. P. Vert posted to network regulatory by maralena on 2008-08-18 08:38:21 as along with 2 people Borelli behindtherabbit
	Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (1 August 2008), e1000140. by Elena Zotenko, Julian Mestre, Dianne P. O'Leary, Teresa M. Przytycka posted to network ppi yeast by maralena on 2008-08-04 08:53:23 as along with 12 people and 1 group lawraga marti chrisamiller kaarsinogen jfr aramata jmjimenez srp33 cabbagesofdoom shikin cerca tmmurali GeneGo
	Functional organisation of Escherichia coli transcriptional regulatory network [My Copy] Journal of Molecular Biology, Vol. 381, No. 1. (1 August 2008), pp. 238-247. by Agustino Martínez-Antonio, Sarath C. Janga, Denis Thieffry posted to ecoli network regulatory transcription by maralena on 2008-07-17 10:24:47 as along with 2 people balabu jjray
	Coherent Coupling of Feedback Loops: A Design Principle of Cell Signaling Networks. [My Copy] Bioinformatics (Oxford, England) (2 July 2008) by Yung-Keun K. Kwon, Kwang-Hyun H. Cho posted to feedback loop network principle signaling by maralena on 2008-07-09 08:04:36 as along with 4 people bootsy jjray lemke reyez
	Identifying gene-disease associations using centrality on a literature mined gene-interaction network [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i277-285. by Arzucan Ozgur, Thuy Vu, Gunes Erkan, Dragomir R. Radev posted to disease gene interaction literature network by maralena on 2008-07-02 09:06:36 as along with 5 people suzhan mitko saket yyby guhjy
	BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 6. (2008) by George Chin, Daniel Chavarria, Grant Nakamura, Heidi Sofia posted to graph network by maralena on 2008-06-28 13:39:49 as along with 1 person guhjy
	Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks. [My Copy] Nature genetics, Vol. 40, No. 7. (15 July 2008), pp. 854-861. by Jun Zhu, Bin Zhang, Erin N. Smith, et al.Becky Drees, Rachel B. Brem, Leonid Kruglyak, Roger E. Bumgarner, Eric E. Schadt posted to network regulatory yeast by maralena on 2008-06-18 07:59:09 as along with 19 people and 1 group JoeBanks arider1 megraw TRHvidsten siebert ggallone jo_davies suteedee burak realzhang kengg ptrobajo tmmurali guhjy roys marck caseybrown djkt srp33 Jarman Lab
	Discovering functional interaction patterns in protein-protein interaction networks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Mehmet Turanalp, Tolga Can posted to interaction network ppi by maralena on 2008-06-16 08:23:23 as along with 6 people and 1 group cerca carlk guhjy Tingting renatomilani aprildh31 Proteasome
	Comparative Pathway Analyzer--a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008) by Sebastian Oehm, David Gilbert, Andreas Tauch, Jens Stoye, Alexander Goesmann posted to analysis clustering network pathway by maralena on 2008-06-11 08:24:33 as along with 5 people irenas thomaskelder renatomilani guhjy beete
	MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control [My Copy] Trends in Genetics, Vol. 24, No. 7. (July 2008), pp. 323-327. by Y. Zhao, S. He, C. Liu, et al.S. Ru, H. Zhao, Z. Yang, P. Yang, X. Yuan, S. Sun, D. Bu posted to microrna network by maralena on 2008-06-04 15:15:26 as along with 8 people and 2 groups fishtank GustavoLacerda druvus biozy bertelsen imtechnology stajich heliopais microRNA Mycology
	VisANT: an integrative framework for networks in systems biology [My Copy] Brief Bioinform (7 May 2008), bbn020. by Zhenjun Hu, Evan S. Snitkin, Charles Delisi posted to network systems_biology tool by maralena on 2008-05-13 08:27:44 as along with 8 people and 1 group Scis0000002 druvus jfr sameetmehta bootsy guhjy maoxizeng srp33 Bioinformatics
	Network-based global inference of human disease genes. [My Copy] Molecular systems biology, Vol. 4 (6 May 2008) by X. Wu, R. Jiang, M. Q. Zhang, S. Li posted to disease human inference network by maralena on 2008-05-13 08:17:36 as along with 13 people carlk daforerog ilyashl saket tmmurali diamantis jfr bootsy biomcgary guhjy zwang ptrobajo Borelli
	GraphFind: enhancing graph searching by low support data mining techniques. [My Copy] BMC bioinformatics, Vol. 9 Suppl 4 (2008) by A. Ferro, R. Giugno, M. Mongiovì, A. Pulvirenti, D. Skripin, D. Shasha posted to data_mining graph network by maralena on 2008-05-12 13:08:37 as along with 2 people guhjy imrchen
	Reconstructing networks of pathways via significance analysis of their intersections [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 4. (2008), S9. by Mirko Francesconi, Daniel Remondini, Nicola Neretti, et al.John Sedivy, Leon Cooper, Ettore Verondini, Luciano Milanesi, Gastone Castellani posted to network pathway significance by maralena on 2008-05-12 13:06:27 as along with 2 people guhjy hryk
	Inferring the role of transcription factors in regulatory networks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (06 May 2008), 228. by Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel posted to network regulatory tf by maralena on 2008-05-09 07:52:22 as along with 6 people dolchan guhjy idonaldson renatomilani heliopais isimpson
	GraphWeb: mining heterogeneous biological networks for gene modules with functional significance. [My Copy] Nucleic acids research (6 May 2008) by Jüri Reimand, Laur Tooming, Hedi Peterson, Priit Adler, Jaak Vilo posted to functional module network by maralena on 2008-05-09 07:52:09 as along with 7 people gotgenes GustavoLacerda jfr guhjy pinney shigepong ptrobajo
	Posttranscriptional control of neuronal development by microRNA networks. [My Copy] Trends in neurosciences, Vol. 31, No. 1. (January 2008), pp. 20-26. by F. B. Gao posted to development lsy-6 microrna mir-124a mir-134 mir-273 mir-7 network by maralena on 2008-05-06 14:56:03 as along with 5 people and 1 group danaiancu daforerog valeriehilgers heliopais dchughes microRNA
	Surfing the p53 network [My Copy] Nature, Vol. 408, No. 6810. (16 November 2000), pp. 307-310. by Bert Vogelstein, David Lane, Arnold J. Levine posted to network p53 by maralena on 2008-05-05 16:19:28 as along with 8 people joannaperkins myzhang tries dylanwalker jstajic textoris bayesian Dualsystems
	microRNAs join the p53 network--another piece in the tumour-suppression puzzle. [My Copy] Nature reviews. Cancer, Vol. 7, No. 11. (November 2007), pp. 819-822. by Lin He, Xingyue He, Scott W. Lowe, Gregory J. Hannon posted to microrna network p53 tumor by maralena on 2008-05-05 15:12:20 as along with 7 people danaiancu myzhang valeriehilgers jfr guhjy dchughes dbae
	A microRNA component of the p53 tumour suppressor network. [My Copy] Nature, Vol. 447, No. 7148. (28 June 2007), pp. 1130-1134. by Lin He, Xingyue He, Lee P. Lim, et al.Elisa de Stanchina, Zhenyu Xuan, Yu Liang, Wen Xue, Lars Zender, Jill Magnus, Dana Ridzon, Aimee L. Jackson, Peter S. Linsley, Caifu Chen, Scott W. Lowe, Michele A. Cleary, Gregory J. Hannon posted to microrna network p53 tumor by maralena on 2008-05-05 12:25:43 as along with 10 people and 1 group myzhang snow_dragon giovenko guhjy jfr andersbj shigepong alejandroid delenca bertelsen microRNA
	Cytoscape ESP: simple search of complex biological networks. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 12. (15 June 2008), pp. 1465-1466. by Maital Ashkenazi, Gary D. Bader, Allan Kuchinsky, Menachem Moshelion, David J. States posted to complex network by maralena on 2008-05-04 13:06:38 as along with 4 people guhjy grahamc kengg renatomilani
	jSquid: a Java applet for graphical on-line network exploration. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 12. (15 June 2008), pp. 1467-1468. by Martin Klammer, Sanjit Roopra, Erik L. Sonnhammer posted to graph java network by maralena on 2008-05-04 13:06:16 as along with 2 people daforerog guhjy
	A methodology for the structural and functional analysis of signaling and regulatory networks. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (7 February 2006) by Steffen Klamt, Julio Saez-Rodriguez, Jonathan A. Lindquist, Luca Simeoni, Ernst D. Gilles posted to analysis network regulation signaling by maralena on 2008-04-28 09:24:36 as along with 5 people and 1 group schwartzjmc lflorez gokhan cdppublications hryk CDP
	A global pathway crosstalk network. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 12. (15 June 2008), pp. 1442-1447. by Y. Li, P. Agarwal, D. Rajagopalan posted to network pathway by maralena on 2008-04-28 08:30:00 as along with 8 people daforerog dragonrez thomaskelder bootsy renatomilani AlexanderPico guhjy balicea
	The MoVIN server for the analysis of protein interaction networks. [My Copy] BMC bioinformatics, Vol. 9 Suppl 2 (2008) by P. Marcatili, G. Bussotti, A. Tramontano posted to analysis network ppi by maralena on 2008-04-21 08:31:49 as along with 3 people kluck carlk guhjy
	Gene regulatory networks and embryonic specification. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (15 April 2008) by Leroy Hood posted to gene network regulation by maralena on 2008-04-21 08:28:03 as along with 2 people bootsy AlexanderPico
	The role of disorder in interaction networks: a structural analysis [My Copy] Molecular Systems Biology, Vol. 4 (25 March 2008) by Philip M. Kim, Andrea Sboner, Yu Xia, Mark Gerstein posted to interaction network by maralena on 2008-03-31 08:22:13 as along with 7 people mgomes pablocarb zwang bootsy biomcgary phoenixzxl chad_davis
	Using process diagrams for the graphical representation of biological networks [My Copy] Nat Biotech, Vol. 23, No. 8. (04 August 2005), pp. 961-966. by Hiroaki Kitano, Akira Funahashi, Yukiko Matsuoka, Kanae Oda posted to biological network sbgn sbml by maralena on 2008-03-28 11:35:16 as along with 8 people antonkratz lflorez dullhunk massivemayhem pmendes srp33 csanford lenov
	Probabilistic model of the human protein-protein interaction network [My Copy] Nature Biotechnology, Vol. 23, No. 8., pp. 951-959. by Daniel R. Rhodes, Scott A. Tomlins, Sooryanarayana Varambally, et al.Vasudeva Mahavisno, Terrence Barrette, Shanker Kalyana-Sundaram, Debashis Ghosh, Akhilesh Pandey, Arul M. Chinnaiyan posted to human network ppi probalistic by maralena on 2008-03-28 10:25:57 as along with 18 people and 2 groups snow_dragon Borelli tonamswish ilyashl aelef cswinburne kentsis lfriedl balajis opheliav wnpx nickluscombe eukfn iris_2001 antonkratz mingzhi phoenixzxl penpen926 kdl EBI-regulation
	IntNetDB v1.0: An integrated protein-protein interaction network database generated by a probabilistic model [My Copy] BMC Bioinformatics, Vol. 7 (18 November 2006), 508. by Kai Xia, Dong Dong, Jing-Dong J. Han posted to network ppi probalistic tool by maralena on 2008-03-28 10:23:06 as along with 3 people wnpx cdallett nedwards
	Reconstruction of cellular signalling networks and analysis of their properties [My Copy] Nature Reviews Molecular Cell Biology, Vol. 6, No. 2. (01 February 2005), pp. 99-111. by Jason A. Papin, Tony Hunter, Bernhard O. Palsson, Shankar Subramaniam posted to network signaling by maralena on 2008-03-28 10:20:07 as along with 10 people and 5 groups reyez lflorez camster rklancer snuppepuppan textoris rhem1224 rubendrr iris_2001 arne dbk-lab TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells dIEMoSIRIS
	Understanding biological functions through molecular networks [My Copy] Cell Research, Vol. 18, No. 2. (01 February 2008), pp. 224-237. by Jing-Dong J. Han posted to function network by maralena on 2008-03-28 08:10:36 as along with 11 people and 1 group Katieleonard rdiaz aviad_work cmmorel cabbagezs jo_davies shikin mingzhi giorgiofotia phoenixzxl guhjy GeneGo
	An Extended Transcriptional Network for Pluripotency of Embryonic Stem Cells [My Copy] Cell, Vol. 132, No. 6. (21 March 2008), pp. 1049-1061. by J. Kim posted to network stemcell transcription by maralena on 2008-03-26 07:12:41 as along with 7 people balabu tonamswish shikin tmmurali guhjy kengg inesdesantiago
	Fitting a Geometric Graph to a Protein-Protein Interaction Network. [My Copy] Bioinformatics (14 March 2008) by Desmond J J. Higham, Marija Rasajski, Natasa Przulj posted to graph network ppi by maralena on 2008-03-20 07:54:54 as along with 10 people and 1 group chad_davis tmmurali AbnerCYH grahamc bootsy scienbox lidaiqiang1981 paolomarcatili guhjy mariap3636 untranet
	Network properties of genes harboring inherited disease mutations [My Copy] Proc Natl Acad Sci U S A In Proceedings of the National Academy of Sciences, Vol. 105, No. 11. (18 March 2008), pp. 4323-4328. by Igor Feldman, Andrey Rzhetsky, Dennis Vitkup posted to disease network by maralena on 2008-03-12 07:45:03 as along with 12 people phoenixzxl ilyashl daforerog frohike carlk saket yyby jeremymiller nolodie guhjy roys ptrobajo
	Network motifs are enriched with transcription factors whose transcripts have short half-lives. [My Copy] Trends Genet, Vol. 21, No. 9. (September 2005), pp. 492-495. by E. Wang, E. Purisima posted to motif network transcription by maralena on 2008-03-10 08:33:27 as along with 1 person comb
	Inference of Biochemical Network Models in S-System Using Multi-Objective Optimization Approach. [My Copy] Bioinformatics (5 March 2008) by Pang-Kai K. Liu, Feng-Sheng S. Wang posted to biolog model network systems by maralena on 2008-03-08 09:14:18 as
	Systematic determination of genetic network architecture. [My Copy] Nature genetics, Vol. 22, No. 3. (July 1999), pp. 281-285. by S. Tavazoie, J. D. Hughes, M. J. Campbell, R. J. Cho, G. M. Church posted to architecture network by maralena on 2008-03-07 14:40:58 as along with 10 people and 2 groups matted biblio24 rsaito senseable-urb adepace nickluscombe karfunkel ellakat isimpson jo_davies EisenLab EBI-regulation
	Network motifs in the transcriptional regulation network of Escherichia coli. [My Copy] Nature genetics, Vol. 31, No. 1. (22 May 2002), pp. 64-68. by Shai S. Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon posted to motifs network transcription by maralena on 2008-03-07 14:15:47 as along with 19 people and 1 group antonkratz vtraag sergiun mtagaya kaarsinogen cswinburne jstajic jjray ssb nickluscombe gurkanbebek jtaylor jayster4 karfunkel blobbybirdman zibuyu hannahrajasingh Borelli ethkim EBI-regulation
	Architecture of a MicroRNA-controlled Gene Regulatory Network That Diversifies Neuronal Cell Fates. [My Copy] Cold Spring Harb Symp Quant Biol, Vol. 71 (2006), pp. 181-188. by O. Hobert posted to microrna network regulation by maralena on 2008-03-07 13:06:48 as along with 3 people and 1 group thegoose2 tharris tardigrade C. elegans / WormBase
	Recent advances in computational promoter analysis in understanding the transcriptional regulatory network [My Copy] Biochemical and Biophysical Research Communications, Vol. 309, No. 3. (26 September 2003), pp. 495-501. by Ping Qiu posted to network promoter transcription by maralena on 2008-03-07 12:55:14 as along with 1 person msuarezdiez
	DIA-MCIS: an importance sampling network randomizer for network motif discovery and other topological observables in transcription networks [My Copy] Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3388-3390. by D. Fusco, B. Bassetti, P. Jona, Cosentino posted to motif network random sampling transcription by maralena on 2008-03-06 09:00:49 as
	Network motifs in integrated cellular networks of transcriptionâregulation and proteinâprotein interaction [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 16. (20 April 2004), pp. 5934-5939. by Esti Yeger-Lotem, Shmuel Sattath, Nadav Kashtan, et al.Shalev Itzkovitz, Ron Milo, Ron Y. Pinter, Uri Alon, Hanah Margalit posted to motif network ppi transcription by maralena on 2008-03-05 08:02:29 as along with 12 people and 4 groups nurban sergiun cswinburne camster snuppepuppan dbk korakot LeightonP hununu jtextori koller carlk streptomyces Philosophy_of_Information dbk-lab Blog_and_Wiki_Research
	MicroRNA regulation of human protein–protein interaction network [My Copy] RNA, Vol. 13, No. 9. (24 September 2007), pp. 1402-1408. by Han Liang, Wen-Hsiung Li posted to human microrna network ppi regulation by maralena on 2008-03-05 07:54:40 as along with 7 people and 1 group tonamswish daforerog jfr andersbj fij cabbagezs heliopais microRNA
	An Experimental Study of the Coloring Problem on Human Subject Networks [My Copy] Science, Vol. 313, No. 5788. (11 August 2006), pp. 824-827. by Michael Kearns, Siddharth Suri, Nick Montfort posted to human network problem by maralena on 2008-03-02 10:43:37 as along with 2 people ssuri AbnerCYH

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microrna	291
network	90
cancer	46
regulation	43
target	42
human	29
ppi	27
transcription	24
cluster	24
pathway	21
signaling	20
notch	20
p53	19
gene	18
stemcell	17
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mir-155	17
expression	17
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cell	15
mir-17-92	15
tf	15
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graph	14
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motif	13
mir-21	12
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tool	11
drosophila	11
mir-1	10
promoter	10
mouse	9
rna	9
database	9
evolution	8
complex	8
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mir-20a	3
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structure	3
splicing	3
systems_biology	3
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pten	3
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mining	2
search	2
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mir-1-2	2
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go	2
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est	1
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b_cell	1
cox2	1
myoblast	1
yan	1
mir-211	1
polycistron	1
il-6	1
mir-92	1
gc	1
mir-9-1	1
mir-200	1
svm	1
web_service	1
mir-221	1
5utr	1
rb2	1
lymphoma	1
egf	1
organization	1
text	1
hand2	1
encode	1
site	1
oscilatting	1
trait	1
semantic	1
cyclin	1
molecular	1
mir-210	1
liver	1
interactome	1
association	1
tpm1	1
cytoplasma	1
anti	1
gpc5	1
nodal	1
scp1	1
lin-14	1
r	1
lymphocyte-specific	1
mir-214	1
flux	1
cylce	1
rgf-distance	1
e2f2	1
evl	1
hierarchical	1
edge-betweenness	1
nf_kappab	1
mel-18	1
lymphocyte	1
mir-103	1
dog	1
family	1
fold	1
c13orf25	1
mcm7	1
software	1
repository	1
ros	1
machine_learning	1
hsp60	1
mir-20	1
hox-a11	1
correlation	1
pancreas	1
ras	1
mir-23a	1
aib1	1
utr	1
gtl2	1
interference	1
inflammation	1
mir34	1
semantic_web	1
integration	1
pirna	1
hypothesis	1
mef	1
mechanism	1
bcl2	1
mir-373	1
co-regulation	1
chr21	1
project	1
mir-145	1
fstl1	1
m-csf	1
validation	1
problem	1
mir-328	1
p130	1
sampling	1
mrna	1
rat	1
community	1
degradation	1
bcl-2	1
mir-125b-2	1
p27	1
topology	1
zebrafish	1
hcn2	1
clique	1
data	1
hmga2	1
gfi1	1
metabolism	1
kip1	1
chimpanzee	1
pattern	1
mir-34a	1
mir-194	1
slug	1
mir-142	1
stem-loop	1
knockout	1
mir-134	1
biological	1
runx1	1
system	1
pdcd4	1
huntington	1
cog-1	1
sbgn	1
workflow	1

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