marcius's library 621 articles Export

	Automated de novo prediction of native-like RNA tertiary structures [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 37. (11 September 2007), pp. 14664-14669. by Rhiju Das, David Baker posted to ab-initio rna structure_prediction by marcius on 2007-09-01 10:46:02 as along with 8 people and 2 groups fisherp rsaito jwm eckart_bindewald zwang physics Ema reyez BioinfoCIPF SGU-CIPF
	RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription [My Copy] Science, Vol. 316, No. 5830. (8 June 2007), pp. 1484-1488. by Philipp Kapranov, Jill Cheng, Sujit Dike, et al.David A. Nix, Radharani Duttagupta, Aarron T. Willingham, Peter F. Stadler, Jana Hertel, Jorg Hackermuller, Ivo L. Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R. Gingeras posted to classification genome ncrna by marcius on 2007-06-15 11:16:53 as along with 14 people and 4 groups gdb maximilianh GustavoLacerda alexg dpollard xico mtagaya rdiaz djkt stajich mathijsv asddd elfar xingxu EisenLab WetBiology BioinfoCIPF SGU-CIPF
	RNA structure: experimental analysis. [My Copy] Curr Opin Microbiol (24 May 2007) by Brice Felden posted to experimental review rna structure by marcius on 2007-06-12 12:56:46 as along with 4 people and 2 groups svozil penka emidio_capriotti debatebob BioinfoCIPF SGU-CIPF
	RNA conformational classes. [My Copy] Nucleic Acids Res, Vol. 32, No. 5. (2004), pp. 1666-1677. by B. Schneider, Z. Morávek, H. M. Berman posted to biophysics classification rna rotamers by marcius on 2007-06-12 12:55:21 as along with 2 people and 2 groups svozil emidio_capriotti BioinfoCIPF SGU-CIPF
	Evolutionary rates vary among rRNA structural elements [My Copy] Nucl. Acids Res., Vol. 35, No. 10. (11 May 2007), pp. 3339-3354. by S. Smit, J. Widmann, R. Knight posted to evolution rna by marcius on 2007-06-12 12:54:21 as along with 6 people and 2 groups mhamada eckart_bindewald balicea penka i000 cjeans BioinfoCIPF SGU-CIPF
	RNAbor: a web server for RNA structural neighbors. [My Copy] Nucleic Acids Res (25 May 2007) by Eva Freyhult, Vincent Moulton, Peter Clote posted to rna secondary_structure sequence-structure server by marcius on 2007-06-04 10:14:23 as along with 2 people and 2 groups sebastien_vigneau evaf BioinfoCIPF SGU-CIPF
	The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. [My Copy] Nucleic Acids Res (25 May 2007) by Sebastien Moretti, Fabrice Armougom, Iain M M. Wallace, Desmond G G. Higgins, Cornelius V V. Jongeneel, Cedric Notredame posted to algorithms alignment sequence sequence_alignment by marcius on 2007-06-04 10:12:59 as along with 2 people and 2 groups sebastien_vigneau marti BioinfoCIPF SGU-CIPF
	RNA Sampler: A new sampling based algorithm for common RNA secondary structure prediction and structural alignment. [My Copy] Bioinformatics (30 May 2007) by Xing Xu, Yongmei Ji, Gary D D. Stormo posted to rna structure_alignment by marcius on 2007-06-04 10:11:38 as along with 2 people and 3 groups zanexu cjeans Bioinformatics BioinfoCIPF SGU-CIPF
	On the relationship between sequence and structure similarities in proteomics [My Copy] Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 717-723. by K. Evgeny posted to bioinformatics classification sequence-structure by marcius on 2007-04-12 10:48:28 as along with 2 people and 2 groups phoenixzxl penka BioinfoCIPF SGU-CIPF
	Deleterious SNP prediction: be mindful of your training data! [My Copy] Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 664-672. by Matthew A. Care, Chris J. Needham, Andrew J. Bulpitt, David R. Westhead posted to bioinformatics snp by marcius on 2007-04-12 10:45:50 as along with 4 people and 2 groups danatcaret penka Yumyai happy_manatee BioinfoCIPF SGU-CIPF
	Multiple structural alignment and clustering of RNA sequences [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 926-932. by Elfar Torarinsson, Jakob H. Havgaard, Jan Gorodkin posted to clustering rna secondary_structure structure_alignment by marcius on 2007-03-01 12:29:48 as along with 11 people and 2 groups parnell rb_india zanexu Md_2007 eckart_bindewald eweaver ppgardne ilh zwang dunnp zhouyu BioinfoCIPF SGU-CIPF
	Key biology databases go wiki [My Copy] Nature, Vol. 445, No. 7129. (14 February 2007), pp. 691-691. by Jim Giles posted to opensourcebiology web20 by marcius on 2007-02-15 17:39:08 as along with 10 people and 6 groups druvus guhjy eweaver kehan raiyar grahamc leechuck PunkRock barriot mircea biodiversity_conservation Bioinformatics BioinfoCIPF SGU-CIPF steinmetzlab GrassBase
	Modeling the evolution of protein domain architectures using maximum parsimony. [My Copy] Journal of molecular biology, Vol. 366, No. 1. (9 February 2007), pp. 307-315. by Jessica H. Fong, Lewis Y. Geer, Anna R. Panchenko, Stephen H. Bryant posted to protein_domains evolution bioinformatics algorithms by marcius on 2007-01-25 08:31:09 as along with 9 people and 3 groups martainn calderonv wiedenhoeft jameswasmuth icases tny choonpeng redelings zwang BioinfoCIPF SGU-CIPF TNT
	Structural proteomics: from the molecule to the system [My Copy] Nature Structural & Molecular Biology, Vol. 14, No. 1., pp. 3-4. by Lucia Banci, Wolfgang Baumeister, Josefina Enfedaque, et al.Udo Heinemann, Gunter Schneider, Israel Silman, Joel L. Sussman posted to meeting proteomics review structural_genomics structure views by marcius on 2007-01-09 09:39:59 as along with 1 person and 2 groups gerry BioinfoCIPF SGU-CIPF
	A combinatorial approach to create artificial homing endonucleases cleaving chosen sequences [My Copy] Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. e149-e149. by J. Smith, S. Grizot, S. Arnould, et al.A. Duclert, J. Epinat, P. Chames, J. Prieto, P. Redondo, F. Blanco, J. Bravo, G. Montoya, F. Paques, P. Duchateau posted to bioengineering protein_design by marcius on 2007-01-03 13:03:20 as along with 2 groups BioinfoCIPF SGU-CIPF
	Sequence comparison by sequence harmony identifies subtype-specific functional sites. [My Copy] Nucleic acids research, Vol. 34, No. 22. (December 2006), pp. 6540-6548. by W. Pirovano, K. A. Feenstra, J. Heringa posted to bioinformatics classification function protein sequence_alignment by marcius on 2007-01-03 13:02:03 as along with 4 people and 2 groups mgomes jameswasmuth sriram_s marti BioinfoCIPF SGU-CIPF
	The interaction networks of structured RNAs [My Copy] Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. 6587-6604. by A. Lescoute, E. Westhof posted to interaction rna secondary_structure by marcius on 2007-01-03 13:00:44 as along with 7 people and 2 groups jec105 jarasch debatebob ankur_iitg jennifermbui reyez austin BioinfoCIPF SGU-CIPF
	RNAs everywhere: genome-wide annotation of structured RNAs. [My Copy] J Exp Zoolog B Mol Dev Evol (14 December 2006) by Rolf Backofen, Stephan H H. Bernhart, Christoph Flamm, et al.Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L L. Hofacker, Kristin Missal, Axel Mosig, Sonja J J. Prohaska, Dominic Rose, Peter F F. Stadler, Andrea Tanzer, Stefan Washietl, Sebastian Will posted to classification review rna by marcius on 2007-01-03 12:59:57 as along with 12 people and 5 groups NicholasErho jfr bala eckart_bindewald tardigrade andersbj penka cdawson ilh raylim jayster4 maralena microRNA BioinfoCIPF SGU-CIPF DictyosteliumGroup GIG
	Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 1. (1 January 2007), pp. 127-128. by Letunic, P. Bork posted to phylogeny server software by marcius on 2007-01-03 12:55:33 as along with 6 people and 2 groups pablocarb aramata guhjy skhadar hpaces gjuggler BioinfoCIPF SGU-CIPF
	SCOR: a Structural Classification of RNA database. [My Copy] Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 392-394. by P. S. Klosterman, M. Tamura, S. R. Holbrook, S. E. Brenner posted to databases rna structure by marcius on 2006-12-21 14:21:00 as along with 2 people and 2 groups dgront debatebob BioinfoCIPF SGU-CIPF
	RNA structure: the long and the short of it. [My Copy] Curr Opin Struct Biol, Vol. 15, No. 3. (June 2005), pp. 302-308. by S. R. Holbrook posted to review rna structure by marcius on 2006-11-29 12:55:28 as along with 3 people and 2 groups jec105 eckart_bindewald debatebob BioinfoCIPF SGU-CIPF
	Discovering disease-genes by topological features in human protein-protein interaction network [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2800-2805. by J. Xu, Y. Li posted to bioinformatics disease protein_interactions by marcius on 2006-11-24 08:57:33 as along with 4 people and 2 groups saket diamantis skhadar ealloza BioinfoCIPF SGU-CIPF
	Synthetic biology--putting engineering into biology [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2790-2799. by Matthias Heinemann, Sven Panke posted to biology review synthetic_biology by marcius on 2006-11-24 08:21:40 as along with 9 people and 3 groups druvus tomhebbron Synthetic_Biology_Literature dbikard aalibes jtaylor Freecat fishtank karfunkel SynBioSys BioinfoCIPF SGU-CIPF
	TimeTree: a public knowledge-base of divergence times among organisms [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2971-2972. by Hedges, S. Blair, Dudley, Joel, Kumar, Sudhir posted to phylogeny by marcius on 2006-11-23 14:51:07 as along with 2 groups BioinfoCIPF SGU-CIPF
	A protein interaction network for pluripotency of embryonic stem cells [My Copy] Nature by Jianlong Wang, Sridhar Rao, Jianlin Chu, et al.Xiaohua Shen, Dana N. Levasseur, Thorold W. Theunissen, Stuart H. Orkin posted to protein_interactions stem_cells systems_biology by marcius on 2006-11-23 11:04:53 as along with 7 people and 2 groups tonamswish kentsis wnpx yeastyboy Ao_Li2007 iris_2001 tdmckee BioinfoCIPF SGU-CIPF
	Variability and memory of protein levels in human cells [My Copy] Nature (19 November 2006) by Alex Sigal, Ron Milo, Ariel Cohen, et al.Naama Geva-Zatorsky, Yael Klein, Yuvalal Liron, Nitzan Rosenfeld, Tamar Danon, Natalie Perzov, Uri Alon posted to classification protein systems_biology by marcius on 2006-11-23 11:02:59 as along with 4 people and 3 groups icases jjray margaritis cjeans BioinfoCIPF SGU-CIPF TNT
	An RNA folding algorithm including pseudoknots based on dynamic weighted matching. [My Copy] Comput Biol Chem, Vol. 30, No. 1. (February 2006), pp. 72-76. by H. Liu, D. Xu, J. Shao, Y. Wang posted to algorithms rna secondary_structure by marcius on 2006-11-16 17:44:25 as along with 1 person and 2 groups eckart_bindewald BioinfoCIPF SGU-CIPF
	ProteinRNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2746-2752. by N. Morozova, J. Allers, Y. Shamoo posted to bioinformatics protein_interactions rna algorithms by marcius on 2006-11-16 09:29:09 as along with 2 groups BioinfoCIPF SGU-CIPF
	Mining frequent stem patterns from unaligned RNA sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 20. (15 October 2006), pp. 2480-2487. by M. Hamada, K. Tsuda, T. Kudo, T. Kin, K. Asai posted to bioinformatics rna secondary_structure by marcius on 2006-11-01 14:13:15 as along with 6 people and 3 groups timhubbard tardigrade andersbj samal dquest plofje microRNA BioinfoCIPF SGU-CIPF
	Spatial localization of ligand binding sites from electron current density surfaces calculated from NMR chemical shift perturbations. [My Copy] J Am Chem Soc, Vol. 124, No. 39. (2 October 2002), pp. 11758-11763. by M. A. McCoy, D. F. Wyss posted to experimental nmr protein_complexes protein_interactions by marcius on 2006-10-30 10:40:13 as along with 2 groups BioinfoCIPF SGU-CIPF
	Three-dimensional comparative modeling of RNA. [My Copy] Nucleic Acids Symp Ser, No. 36. (1997), pp. 69-71. by C. Zwieb, F. Müller posted to algorithms bioinformatics comparative_modeling rna by marcius on 2006-10-27 21:31:25 as along with 2 groups BioinfoCIPF SGU-CIPF
	From The Cover: Global mapping of the protein structure space and application in structure-based inference of protein function [My Copy] PNAS, Vol. 102, No. 10. (8 March 2005), pp. 3651-3656. by Jingtong Hou, Se-Ran Jun, Chao Zhang, Sung-Hou Kim posted to algorithms bioinformatics clustering protein_structure by marcius on 2006-10-26 08:42:48 as along with 1 person and 2 groups tny BioinfoCIPF SGU-CIPF
	Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection [My Copy] Nucleic Acids Research, Vol. 34, No. 17. (October 2006), pp. e112-e112. by D. Chivian, D. Baker posted to algorithms bioinformatics comparative_modeling sequence_alignment by marcius on 2006-10-25 21:43:08 as along with 1 person and 2 groups j3xucite BioinfoCIPF SGU-CIPF
	RNA structures and folding: from conventional to new issues in structure predictions. [My Copy] Curr Opin Struct Biol, Vol. 7, No. 2. (April 1997), pp. 229-235. by P. Schuster, P. F. Stadler, A. Renner posted to prediction review rna structure by marcius on 2006-10-23 17:16:19 as along with 1 person and 2 groups emidio_capriotti BioinfoCIPF SGU-CIPF
	Protein–Protein Interactions More Conserved within Species than across Species [My Copy] PLoS Comput Biol, Vol. 2, No. 7. (21 July 2006), e79. by Sven Mika, Burkhard Rost posted to algorithms evolution protein_domains protein_interactions by marcius on 2006-10-22 12:13:05 as along with 8 people and 2 groups karthikraman chica RebeccaHamer robfsouza jeremymiller chad_davis skhadar dquest BioinfoCIPF SGU-CIPF
	Structural Modeling of Protein Interactions by Analogy: Application to PSD-95 [My Copy] PLoS Computational Biology, Vol. preprint, No. 2006. (1 October 2006) by Dmitry Korkin, Fred P. Davis, Frank Alber, et al.Tinh Luong, Min-Yi Shen, Vladan Lucic, Mary B. Kennedy, Andrej Sali posted to algorithms comparative_docking comparative_modeling protein_domains protein_interactions by marcius on 2006-10-22 12:12:40 as along with 2 groups BioinfoCIPF SGU-CIPF
	The many faces of protein-protein interactions: A compendium of interface geometry. [My Copy] PLoS computational biology, Vol. 2, No. 9. (29 September 2006), e124. by Wan Kyu K. Kim, Andreas Henschel, Christof Winter, Michael Schroeder posted to algorithms databases protein_domains protein_interactions by marcius on 2006-10-22 12:12:00 as along with 10 people and 2 groups winterschlaefer zdai raik bicko chad_davis choonpeng Evangelia wilbur allmensch marck BioinfoCIPF SGU-CIPF
	Localization of protein-binding sites within families of proteins. [My Copy] Protein Sci, Vol. 14, No. 9. (September 2005), pp. 2350-2360. by D. Korkin, F. P. Davis, A. Sali posted to bioinformatics comparative_docking protein_interactions by marcius on 2006-10-22 12:11:09 as along with 4 people and 4 groups barry tjimenez bicko wilbur structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	NMR spectroscopy of RNA. [My Copy] Chembiochem, Vol. 4, No. 10. (6 October 2003), pp. 936-962. by B. Fürtig, C. Richter, J. Wöhnert, H. Schwalbe posted to nmr review rna by marcius on 2006-10-22 12:10:22 as along with 1 person and 2 groups bmduggan BioinfoCIPF SGU-CIPF
	Mapping protein-protein interactions in solution by NMR spectroscopy. [My Copy] Biochemistry, Vol. 41, No. 1. (8 January 2002), pp. 1-7. by E. R. Zuiderweg posted to nmr protein_interactions review by marcius on 2006-10-22 12:09:51 as along with 1 person and 2 groups dgruiz BioinfoCIPF SGU-CIPF
	Use of 19F NMR spectroscopy to screen chemical libraries for ligands that bind to proteins. [My Copy] Org Biomol Chem, Vol. 2, No. 5. (7 March 2004), pp. 725-731. by T. Tengel, T. Fex, H. Emtenas, F. Almqvist, I. Sethson, J. Kihlberg posted to ligand nmr protein_interactions by marcius on 2006-10-22 12:09:26 as along with 2 groups BioinfoCIPF SGU-CIPF
	A multi-model approach to nucleic acid-based drug development. [My Copy] BioDrugs, Vol. 18, No. 1. (2004), pp. 37-50. by I. Gautherot, R. Sodoyer posted to discovery drug nmr rna by marcius on 2006-10-22 12:09:02 as along with 2 groups BioinfoCIPF SGU-CIPF
	Studies of protein-ligand interactions by NMR. [My Copy] Biochem Soc Trans, Vol. 31, No. Pt 5. (October 2003), pp. 1006-1009. by J. Clarkson, I. D. Campbell posted to nmr protein_interactions by marcius on 2006-10-22 12:08:27 as along with 2 groups BioinfoCIPF SGU-CIPF
	Protein-protein interaction analysis by nuclear magnetic resonance spectroscopy. [My Copy] Methods Mol Biol, Vol. 261 (2004), pp. 79-92. by G. Gao, J. G. Williams, S. L. Campbell posted to nmr protein_interactions by marcius on 2006-10-22 12:08:07 as along with 2 groups BioinfoCIPF SGU-CIPF
	1H MR spectroscopy of the brain: absolute quantification of metabolites. [My Copy] Radiology, Vol. 240, No. 2. (August 2006), pp. 318-332. by J. F. Jansen, W. H. Backes, K. Nicolay, M. E. Kooi posted to metabolomics nmr by marcius on 2006-10-22 12:07:24 as along with 1 person and 2 groups YvesDeDeene BioinfoCIPF SGU-CIPF
	Virtual drug discovery and development for neglected diseases through public-private partnerships. [My Copy] Nat Rev Drug Discov, Vol. 2, No. 11. (November 2003), pp. 919-928. by S. Nwaka, R. G. Ridley posted to discovery disease drug review views by marcius on 2006-10-21 15:23:40 as along with 2 people and 2 groups cchand yaredo BioinfoCIPF SGU-CIPF
	Antimalarial drug discovery: efficacy models for compound screening. [My Copy] Nat Rev Drug Discov, Vol. 3, No. 6. (June 2004), pp. 509-520. by D. A. Fidock, P. J. Rosenthal, S. L. Croft, R. Brun, S. Nwaka posted to discovery disease drug review views by marcius on 2006-10-21 15:22:59 as along with 1 person and 2 groups cchand BioinfoCIPF SGU-CIPF
	Drug discovery and beyond: the role of public-private partnerships in improving access to new malaria medicines [My Copy] Transactions of the Royal Society of Tropical Medicine and Hygiene, Vol. 99, No. Supplement 1. (2005), pp. 20-29. by Solomon Nwaka posted to discovery disease drug review views by marcius on 2006-10-21 15:22:06 as along with 1 person and 2 groups cmmorel BioinfoCIPF SGU-CIPF
	Evaluation of library ranking efficacy in virtual screening. [My Copy] J Comput Chem, Vol. 26, No. 1. (15 January 2005), pp. 11-22. by M. Kontoyianni, G. S. Sokol, L. M. McClellan posted to algorithms docking drug ligand protein by marcius on 2006-10-21 14:25:23 as along with 3 people and 2 groups BragilMassoud nachtalp schuwi BioinfoCIPF SGU-CIPF
	Protemot: prediction of protein binding sites with automatically extracted geometrical templates. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by D. T. Chang, Y. Z. Weng, J. H. Lin, M. J. Hwang, Y. J. Oyang posted to bioinformatics drug ligand protein by marcius on 2006-10-21 14:24:50 as along with 2 groups BioinfoCIPF SGU-CIPF

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rna	213
bioinformatics	196
review	127
biophysics	90
evolution	86
protein_structure	86
structure	86
structure_prediction	64
algorithms	56
computational_biology	53
secondary_structure	53
protein	43
folding	41
classification	38
casp	35
ncrna	35
docking	32
drug	32
protein_interactions	31
genome	30
function	29
microrna	27
cafasp	26
sequence_alignment	25
protein_function	24
software	23
servers	22
views	22
comparative_modeling	19
model_assessment	19
statistical_potentials	19
biology	18
structural_genomics	18
databases	17
disease	16
nmr	16
ribosome	16
ligand	15
protein_domains	15
protein_folding	15
bioengineering	14
clustering	14
protein_fragments	14
ab-initio	12
genes	11
prediction	11
structure_alignment	11
dna	10
alignment	9
snp	9
statistics	9
model_evaluation	8
experimental	7
membrane_protein	7
gene_expression	6
microarray	6
phylogeny	6
systems_biology	6
foce_field	5
mechano_receptors	5
molecular_dynamics	5
motif	5
protein_threading	5
sequence	5
virus	5
discovery	4
ribozyme	4
rotamers	4
sequence-structure	4
text_mining	4
cancer	3
comparative_docking	3
human	3
interaction	3
meeting	3
news	3
protein_complexes	3
server	3
allosteric	2
editorial	2
hts	2
hypotesis	2
immunology	2
pdb	2
pleiotropy	2
programming	2
proteomics	2
aminoacid_alphabets	1
congress	1
consensus	1
disulfide	1
dynamics	1
fold	1
glyco	1
loop_modeling	1
machine_learning	1
malaria	1
membrane	1
metabolomics	1
metagenomics	1
molecular_mimicry	1
mysql	1
nanotechnology	1
nucleosome	1
ontology	1
opensourcebiology	1
php	1
plant	1
position	1
proteases	1
protein_design	1
protein_disorder	1
side_chains	1
stability	1
stem_cells	1
synthetic_biology	1
trypsin	1
web20	1

marcius's library 621 articles Export

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