marcius's casp [35 articles] Export

Recent papers added to marcius's library classified by the tag casp. You can also see everyone's casp.

	Revisiting the prediction of protein function at CASP6 [My Copy] FEBS Journal, Vol. 273, No. 13. (July 2006), pp. 2977-2983. by Pellegrini-Calace, Marialuisa, Soro, Simonetta, Tramontano, Anna posted to casp protein_function by marcius on 2006-08-31 17:02:04 as along with 2 groups BioinfoCIPF SGU-CIPF
	All are not equal: A benchmark of different homology modeling programs [My Copy] Protein Sci, Vol. 14, No. 5. (1 May 2005), pp. 1315-1327. by Bjorn Wallner, Arne Elofsson posted to cafasp casp comparative_modeling by marcius on 2006-03-02 03:40:24 as along with 6 people and 2 groups cdeane karbak eweaver BioNica rsantana hmk BioinfoCIPF SGU-CIPF
	A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction. [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (3 June 2005), pp. 285-289. by John Moult posted to cafasp casp model_evaluation review by marcius on 2006-01-13 23:59:34 as along with 13 people and 2 groups krapnik timhubbard flbarroso mcbla ujh nigham thaliana warlock6x3 ffranca j3xucite dgront granujilla mingzhi BioinfoCIPF SGU-CIPF
	Practical lessons from protein structure prediction. [My Copy] Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1874-1891. by K. Ginalski, N. V. Grishin, A. Godzik, L. Rychlewski posted to cafasp casp comparative_modeling model_assessment structure_prediction by marcius on 2005-12-22 06:53:06 as along with 8 people and 4 groups mcbla ana aalibes thaliana okarsligil duartemolha dgront mirzazadeh structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	RNA 3D structure prediction: (1) assessing rna 3D structure similarity from 2D structure similarity. [My Copy] Genome Inform Ser Workshop Genome Inform, Vol. 15, No. 2. (2004), pp. 112-120. by J. E. Barreda D C, Y. Shigenobu, E. Ichiishi, C. A. Del Carpio M posted to casp comparative_modeling rna secondary_structure structure by marcius on 2005-12-20 06:19:07 as along with 1 person and 2 groups eckart_bindewald BioinfoCIPF SGU-CIPF
	Assessment of fold recognition predictions in CASP6. [My Copy] Proteins (26 September 2005) by Guoli Wang, Yumi Jin, Roland L L. Dunbrack posted to bioinformatics cafasp casp model_evaluation protein_threading by marcius on 2005-10-22 09:13:36 as along with 3 people and 2 groups nigham schuylrp janasont BioinfoCIPF SGU-CIPF
	Assessment of CASP6 predictions for new and nearly new fold targets. [My Copy] Proteins (26 September 2005) by James J J. Vincent, Chin-Hsien H. Tai, B K K. Sathyanarayana, Byungkook Lee posted to ab-initio cafasp casp model_evaluation structure_prediction by marcius on 2005-10-22 09:12:32 as along with 1 person and 2 groups nigham BioinfoCIPF SGU-CIPF
	Protein structure prediction in CASP6 using CHIMERA and FAMS. [My Copy] Proteins (26 September 2005) by Mayuko Takeda-Shitaka, Genki Terashi, Daisuke Takaya, Kazuhiko Kanou, Mitsuo Iwadate, Hideaki Umeyama posted to bioinformatics cafasp casp sequence_alignment structure_prediction by marcius on 2005-10-22 09:11:43 as along with 2 groups BioinfoCIPF SGU-CIPF
	Protein structure prediction using a variety of profile libraries and 3D verification. [My Copy] Proteins (26 September 2005) by Kentaro Tomii, Takatsugu Hirokawa, Chie Motono posted to bioinformatics cafasp casp model_assessment structure_prediction by marcius on 2005-10-22 09:11:09 as along with 2 groups BioinfoCIPF SGU-CIPF
	SAM-T04: what's new in protein-structure prediction for CASP6. [My Copy] Proteins (26 September 2005) by Kevin Karplus, Sol Katzman, George Shackleford, et al.Martina Koeva, Jenny Draper, Bret Barnes, Marcia Soriano, Richard Hughey posted to cafasp casp sequence_alignment structure_prediction by marcius on 2005-10-22 09:10:38 as along with 2 groups BioinfoCIPF SGU-CIPF
	Assessment of disorder predictions in CASP6. [My Copy] Proteins (26 September 2005) by Yumi Jin, Roland L L. Dunbrack posted to bioinformatics cafasp casp model_evaluation protein_disorder by marcius on 2005-10-22 09:09:32 as along with 1 person and 2 groups niallhaslam BioinfoCIPF SGU-CIPF
	Evaluation of domain prediction in CASP6. [My Copy] Proteins (26 September 2005) by Chin-Hsien H. Tai, Woei-Jyh J. Lee, James J J. Vincent, Byungkook Lee posted to cafasp casp model_evaluation protein_domains by marcius on 2005-10-22 09:08:12 as along with 1 person and 2 groups nigham BioinfoCIPF SGU-CIPF
	Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM. [My Copy] Proteins (26 September 2005) by David E E. Kim, Dylan Chivian, Lars Malmström, David Baker posted to cafasp casp protein_domains ab-initio by marcius on 2005-10-22 09:07:40 as along with 1 person and 2 groups jwm BioinfoCIPF SGU-CIPF
	Protein loop structure prediction with flexible stem geometries. [My Copy] Proteins (12 October 2005) by M Mönnigmann, C A A. Floudas posted to cafasp casp loop_modeling protein_structure structure_prediction by marcius on 2005-10-22 09:06:47 as along with 1 person and 2 groups vavi BioinfoCIPF SGU-CIPF
	Scoring docking models with evolutionary information. [My Copy] Proteins, Vol. 60, No. 2. (1 August 2005), pp. 275-280. by M. Tress, D. de Juan, O. Graña, et al.M. J. Gómez, P. Gómez-Puertas, J. M. González, G. López, A. Valencia posted to bioinformatics cafasp casp protein_interactions by marcius on 2005-10-22 09:02:06 as along with 3 people and 2 groups bicko ameetsoni cjeans BioinfoCIPF SGU-CIPF
	Domain definition and target classification for CASP6. [My Copy] Proteins (26 September 2005) by Michael Tress, Chin-Hsien H. Tai, Guoli Wang, et al.Iakes Ezkurdia, Gonzalo López, Alfonso Valencia, Byungkook Lee, Roland L L. Dunbrack posted to cafasp casp protein_domains by marcius on 2005-10-22 09:01:23 as along with 2 groups BioinfoCIPF SGU-CIPF
	CASP6 data processing and automatic evaluation at the protein structure prediction center [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. S7. (26 September 2005), pp. 19-23. by Andriy Kryshtafovych, Maciej Milostan, Lukasz Szajkowski, Pawel Daniluk, Krzysztof Fidelis posted to cafasp casp model_evaluation by marcius on 2005-10-22 08:59:49 as along with 1 person and 2 groups TRHvidsten BioinfoCIPF SGU-CIPF
	Assessment of predictions submitted for the CASP6 comparative modelling category. [My Copy] Proteins (26 September 2005) by Michael Tress, Iakes Ezkurdia, Osvaldo Graña, Gonzalo López, Alfonso Valencia posted to cafasp casp comparative_modeling protein_structure structure_prediction by marcius on 2005-10-22 08:59:31 as along with 3 people and 2 groups nigham ffranca magia215 BioinfoCIPF SGU-CIPF
	TASSER: An automated method for the prediction of protein tertiary structures in CASP6. [My Copy] Proteins (26 September 2005) by Yang Zhang, Adrian K K. Arakaki, Jeffrey Skolnick posted to cafasp casp model_assessment structure_alignment by marcius on 2005-10-22 08:58:50 as along with 4 people and 2 groups nigham dgront schuylrp mirzazadeh BioinfoCIPF SGU-CIPF
	Free modeling with Rosetta in CASP6. [My Copy] Proteins (26 September 2005) by Philip Bradley, Lars Malmström, Bin Qian, et al.Jack Schonbrun, Dylan Chivian, David E E. Kim, Jens Meiler, Kira M S M. Misura, David Baker posted to ab-initio cafasp casp structure_prediction by marcius on 2005-10-22 08:58:20 as along with 6 people and 2 groups krapnik saunders jwm dgront schuylrp mirzazadeh BioinfoCIPF SGU-CIPF
	Prediction of novel and analogous folds using fragment assembly and fold recognition. [My Copy] Proteins (26 September 2005) by D T T. Jones, K Bryson, A Coleman, et al.L J J. McGuffin, M I I. Sadowski, J S S. Sodhi, J J J. Ward posted to cafasp casp comparative_modeling model_assessment protein_fragments protein_structure structure_prediction by marcius on 2005-10-22 08:57:29 as along with 2 groups BioinfoCIPF SGU-CIPF
	SPARKS 2 and SP(3) servers in CASP 6. [My Copy] Proteins (26 September 2005) by Hongyi Zhou, Yaoqi Zhou posted to cafasp casp comparative_modeling model_assessment protein_structure structure_prediction by marcius on 2005-10-22 08:56:27 as along with 1 person and 2 groups j3xucite BioinfoCIPF SGU-CIPF
	The prediction of protein function at CASP6. [My Copy] Proteins (26 September 2005) by Simonetta Soro, Anna Tramontano posted to casp protein_function by marcius on 2005-10-22 08:55:56 as along with 2 groups BioinfoCIPF SGU-CIPF
	Progress over the first decade of CASP experiments. [My Copy] Proteins (26 September 2005) by Andriy Kryshtafovych, Ceslovas Venclovas, Krzysztof Fidelis, John Moult posted to casp review structure_prediction by marcius on 2005-10-22 08:55:22 as along with 5 people and 2 groups saunders bicko ffranca schuylrp granujilla BioinfoCIPF SGU-CIPF
	PROTEIN REFINEMENT: A NEW CHALLENGE FOR CASP IN ITS 10TH ANNIVERSARY [My Copy] Bioinformatics, Vol. 21, No. 3. (February 2005), 277. by Alfonso Valencia posted to casp protein_structure structure_prediction by marcius on 2005-10-22 03:09:41 as along with 2 groups BioinfoCIPF SGU-CIPF
	Empirical limits for template-based protein structure prediction: the CASP5 example. [My Copy] FEBS Lett, Vol. 579, No. 5. (February 2005), pp. 1203-1207. by Contreras B. Moreira, I. Ezkurdia, M. L. Tress, A. Valencia posted to casp protein_structure structure_prediction by marcius on 2005-10-22 03:09:41 as along with 2 groups BioinfoCIPF SGU-CIPF
	The protein structure prediction problem could be solved using the current PDB library. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 4. (January 2005), pp. 1029-1034. by Y. Zhang, J. Skolnick posted to casp pdb protein_fragments protein_structure structure_prediction by marcius on 2005-10-22 03:09:41 as along with 2 groups BioinfoCIPF SGU-CIPF
	LiveBench-8: the large-scale, continuous assessment of automated protein structure prediction. [My Copy] Protein Sci, Vol. 14, No. 1. (January 2005), pp. 240-245. by L. Rychlewski, D. Fischer posted to casp protein_structure structure_prediction by marcius on 2005-10-22 03:09:41 as along with 2 groups BioinfoCIPF SGU-CIPF
	Scoring function for automated assessment of protein structure template quality [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 57, No. 4., pp. 702-710. by Yang Zhang, Jeffrey Skolnick posted to algorithms casp protein_structure structure_prediction by marcius on 2005-10-22 03:09:41 as along with 2 groups BioinfoCIPF SGU-CIPF
	3D-Jury: a simple approach to improve protein structure predictions. [My Copy] Bioinformatics, Vol. 19, No. 8. (May 2003), pp. 1015-1018. by K. Ginalski, A. Elofsson, D. Fischer, L. Rychlewski posted to casp consensus protein_structure structure_prediction by marcius on 2005-10-22 03:09:40 as along with 2 groups BioinfoCIPF SGU-CIPF
	Empirical limits for template-based protein structure prediction: the CASP5 example. [My Copy] FEBS Lett, Vol. 579, No. 5. (14 February 2005), pp. 1203-1207. by B. Contreras-Moreira, I. Ezkurdia, M. L. Tress, A. Valencia posted to bioinformatics cafasp casp protein_structure by marcius on 2005-10-22 00:54:18 as along with 3 people and 2 groups karbak iakes magia215 BioinfoCIPF SGU-CIPF
	Can correct protein models be identified? [My Copy] Protein Sci, Vol. 12, No. 5. (May 2003), pp. 1073-1086. by B. Wallner, A. Elofsson posted to cafasp casp model_assessment by marcius on 2005-10-21 21:10:50 as along with 2 people and 2 groups pjcite j3xucite BioinfoCIPF SGU-CIPF
	MaxSub: an automated measure for the assessment of protein structure prediction quality. [My Copy] Bioinformatics, Vol. 16, No. 9. (September 2000), pp. 776-785. by N. Siew, A. Elofsson, L. Rychlewski, D. Fischer posted to bioinformatics cafasp casp model_evaluation by marcius on 2005-10-21 21:01:19 as along with 6 people and 2 groups sebk rabio granujilla BragilMassoud dgront biehl BioinfoCIPF SGU-CIPF
	The significance of performance ranking in CASP--response to Marti-Renom et al. [My Copy] Structure (Camb), Vol. 10, No. 3. (March 2002) by J. Moult, K. Fidelis, A. Zemla, T. Hubbard, A. Tramontano posted to cafasp casp by marcius on 2005-10-20 21:34:47 as along with 1 person and 2 groups timhubbard BioinfoCIPF SGU-CIPF
	Reliability of assessment of protein structure prediction methods. [My Copy] Structure (Camb), Vol. 10, No. 3. (March 2002), pp. 435-440. by M. A. Marti-Renom, M. S. Madhusudhan, A. Fiser, B. Rost, A. Sali posted to cafasp casp by marcius on 2005-10-20 21:34:30 as along with 1 person and 2 groups dgront BioinfoCIPF SGU-CIPF

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rna	213
bioinformatics	196
review	127
biophysics	90
protein_structure	86
structure	86
evolution	86
structure_prediction	64
algorithms	56
computational_biology	53
secondary_structure	53
protein	43
folding	41
classification	38
ncrna	35
casp	35
drug	32
docking	32
protein_interactions	31
genome	30
function	29
microrna	27
cafasp	26
sequence_alignment	25
protein_function	24
software	23
views	22
servers	22
comparative_modeling	19
model_assessment	19
statistical_potentials	19
biology	18
structural_genomics	18
databases	17
ribosome	16
nmr	16
disease	16
protein_domains	15
ligand	15
protein_folding	15
bioengineering	14
clustering	14
protein_fragments	14
ab-initio	12
structure_alignment	11
genes	11
prediction	11
dna	10
statistics	9
snp	9
alignment	9
model_evaluation	8
membrane_protein	7
experimental	7
gene_expression	6
systems_biology	6
microarray	6
phylogeny	6
virus	5
mechano_receptors	5
foce_field	5
sequence	5
protein_threading	5
motif	5
molecular_dynamics	5
text_mining	4
ribozyme	4
discovery	4
rotamers	4
sequence-structure	4
protein_complexes	3
cancer	3
comparative_docking	3
server	3
news	3
human	3
interaction	3
meeting	3
immunology	2
programming	2
hypotesis	2
allosteric	2
proteomics	2
editorial	2
pleiotropy	2
pdb	2
hts	2
trypsin	1
ontology	1
loop_modeling	1
proteases	1
metabolomics	1
opensourcebiology	1
nucleosome	1
side_chains	1
protein_disorder	1
protein_design	1
nanotechnology	1
membrane	1
stability	1
disulfide	1
position	1
web20	1
malaria	1
congress	1
synthetic_biology	1
fold	1
glyco	1
dynamics	1
machine_learning	1
mysql	1
aminoacid_alphabets	1
metagenomics	1
php	1
molecular_mimicry	1
stem_cells	1
consensus	1
plant	1

marcius's casp [35 articles] Export

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