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marcius's classification [38 articles]

Recent papers added to marcius's library classified by the tag classification. You can also see everyone's classification.
  • RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
    Science (17 May 2007), 1138341.
    by Philipp Kapranov, Jill Cheng, Sujit Dike, David A Nix, Radharani Duttagupta, Aarron T Willingham, Peter F Stadler, Jana Hertel, Joerg Hackermueller, Ivo L Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R Gingeras
    posted to classification genome ncrna by marcius on 2007-06-15 11:16:53 as ** along with 11 people and 4 groups xingxu alexg dpollard xico mtagaya rdiaz djkt stajich mathijsv asddd elfar EisenLab WetBiology BioinfoCIPF SGU-CIPF
  • RNA conformational classes.
    Nucleic Acids Res, Vol. 32, No. 5. (2004), pp. 1666-1677.
    by B Schneider, Z Morávek, HM Berman
    posted to biophysics classification rna rotamers by marcius on 2007-06-12 12:55:21 as ** along with 1 person and 2 groups emidio_capriotti BioinfoCIPF SGU-CIPF
  • On the relationship between sequence and structure similarities in proteomics
    Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 717-723.
    by K Evgeny
    posted to bioinformatics classification sequence-structure by marcius on 2007-04-12 10:48:28 as ** along with 1 person and 2 groups penka BioinfoCIPF SGU-CIPF
  • Sequence comparison by sequence harmony identifies subtype-specific functional sites
    Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. 6540-6548.
    by W Pirovano, KA Feenstra, J Heringa
    posted to bioinformatics classification function protein sequence_alignment by marcius on 2007-01-03 13:02:03 as ** along with 2 people and 2 groups sriram_s marti BioinfoCIPF SGU-CIPF
  • RNAs everywhere: genome-wide annotation of structured RNAs.
    J Exp Zoolog B Mol Dev Evol (14 December 2006)
    by Rolf Backofen, Stephan H H Bernhart, Christoph Flamm, Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L L Hofacker, Kristin Missal, Axel Mosig, Sonja J J Prohaska, Dominic Rose, Peter F F Stadler, Andrea Tanzer, Stefan Washietl, Sebastian Will
    posted to classification review rna by marcius on 2007-01-03 12:59:57 as ** along with 11 people and 5 groups jfr bala eckart_bindewald tardigrade andersbj penka cdawson ilh raylim jayster4 maralena microRNA BioinfoCIPF SGU-CIPF DictyosteliumGroup GIG
  • Variability and memory of protein levels in human cells
    Nature (19 November 2006)
    by Alex Sigal, Ron Milo, Ariel Cohen, Naama Geva-Zatorsky, Yael Klein, Yuvalal Liron, Nitzan Rosenfeld, Tamar Danon, Natalie Perzov, Uri Alon
    posted to classification protein systems_biology by marcius on 2006-11-23 11:02:59 as ** along with 4 people and 3 groups icases jjray margaritis cjeans BioinfoCIPF SGU-CIPF TNT
  • Sequence and structural differences between enzyme and nonenzyme homologs.
    Structure (Camb), Vol. 10, No. 10. (October 2002), pp. 1435-1451.
    by AE Todd, CA Orengo, JM Thornton
    posted to bioinformatics classification function protein by marcius on 2006-09-13 15:36:46 as ** along with 1 person and 2 groups matzke BioinfoCIPF SGU-CIPF
  • Application of the RNA structure classification system, CSNA, to NMR structure determination.
    Nucleic Acids Res Suppl, No. 3. (2003), pp. 127-128.
    by S Baba, A Takasu, K Watanabe, G Kawai
    posted to classification ontology rna structure by marcius on 2006-09-13 15:19:00 as ** along with 1 person and 2 groups eckart_bindewald BioinfoCIPF SGU-CIPF
  • Structural Diversity of Domain Superfamilies in the CATH Database.
    J Mol Biol (2 June 2006)
    by Gabrielle A A Reeves, Timothy J J Dallman, Oliver C C Redfern, Adrian Akpor, Christine A A Orengo
    posted to classification databases structure by marcius on 2006-09-08 12:25:48 as ** along with 2 people and 5 groups barry sobolevnrm structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF baker-group
  • The RNA Ontology Consortium: an open invitation to the RNA community.
    RNA, Vol. 12, No. 4. (April 2006), pp. 533-541.
    by NB Leontis, RB Altman, HM Berman, SE Brenner, JW Brown, DR Engelke, SC Harvey, SR Holbrook, F Jossinet, SE Lewis, F Major, DH Mathews, JS Richardson, JR Williamson, E Westhof
    posted to bioinformatics classification clustering rna sequence structure by marcius on 2006-09-07 17:37:08 as ** along with 2 people and 2 groups reyez debatebob BioinfoCIPF SGU-CIPF
  • A top-level ontology of functions and its application in the Open Biomedical Ontologies
    Bioinformatics, Vol. 22, No. 14. (July 2006), pp. e66-e73.
    by P Burek, R Hoehndorf, F Loebe, J Visagie, H Herre, J Kelso
    posted to classification function protein by marcius on 2006-08-01 11:49:45 as ** along with 1 person and 2 groups ealloza BioinfoCIPF SGU-CIPF
  • miRBase: microRNA sequences, targets and gene nomenclature.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by S Griffiths-Jones, RJ Grocock, S van Dongen, A Bateman, AJ Enright
    posted to classification databases microrna servers by marcius on 2006-07-26 14:39:01 as ** along with 8 people and 3 groups eckart_bindewald tardigrade cdawson ealloza Garamonfok natstreet maralena elfar BioinfoCIPF SGU-CIPF GIG
  • PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by L Conde, JM Vaquerizas, H Dopazo, L Arbiza, J Reumers, F Rousseau, J Schymkowitz, J Dopazo
    posted to bioinformatics classification servers snp by marcius on 2006-07-20 12:29:31 as ** along with 2 people and 2 groups AlexanderPico hdopazo BioinfoCIPF SGU-CIPF
  • Emergence of protein fold families through rational design.
    PLoS Comput Biol, Vol. 2, No. 7. (7 July 2006)
    by F Ding, NV Dokholyan, E Shakhnovich
    posted to biophysics classification protein_domains by marcius on 2006-07-19 10:40:04 as ** along with 1 person and 2 groups insectopalo BioinfoCIPF SGU-CIPF
  • Functional classification using phylogenomic inference.
    PLoS Comput Biol, Vol. 2, No. 6. (30 June 2006)
    by D Brown, K Sjölander
    posted to bioinformatics classification evolution phylogeny by marcius on 2006-07-19 10:36:11 as ** along with 1 person and 2 groups jhc BioinfoCIPF SGU-CIPF
  • microRNA target predictions in animals.
    Nat Genet, Vol. 38 Suppl 1, No. 6s. (June 2006)
    by Nikolaus Rajewsky
    posted to bioinformatics classification microrna review by marcius on 2006-07-18 17:10:55 as ** along with 8 people and 4 groups balicea andersbj mtagaya chenlc03 Garamonfok physics heliopais maralena Bioinformatics microRNA BioinfoCIPF SGU-CIPF
  • Conservation and divergence of plant microRNA genes
    The Plant Journal, Vol. 46, No. 2. (April 2006), pp. 243-259.
    by Baohong Zhang, Xiaoping Pan, Charles H Cannon, George P Cobb, Todd A Anderson
    posted to classification evolution microrna plant by marcius on 2006-07-13 14:04:46 as ** along with 3 people and 4 groups mortenlindow andersbj cdawson microRNA BioinfoCIPF SGU-CIPF GIG
  • MicroRNA enrichment among short ultraconserved sequences in insects
    Nucleic Acids Research, Vol. 34, No. 9. (2006), pp. e65-e65.
    by Tran, , Havlak, , Miller,
    posted to bioinformatics classification microrna by marcius on 2006-07-13 10:31:29 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Candidates for Novel RNA Topologies
    Journal of Molecular Biology, Vol. 341, No. 5. (27 August 2004), pp. 1129-1144.
    by Namhee Kim, Nahum Shiffeldrim, Hin H Gan, Tamar Schlick
    posted to bioinformatics classification clustering rna structure by marcius on 2006-05-19 22:17:31 as ** along with 2 people and 3 groups eckart_bindewald condon beta BioinfoCIPF SGU-CIPF
  • Fast protein classification with multiple networks.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by K Tsuda, H Shin, B Schölkopf
    posted to bioinformatics classification protein by marcius on 2006-05-15 22:41:32 as ** along with 2 people and 2 groups dwf bootsy BioinfoCIPF SGU-CIPF
  • BicAT: a biclustering analysis toolbox
    Bioinformatics, Vol. 22, No. 10. (15 May 2006), pp. 1282-1283.
    by Simon Barkow, Stefan Bleuler, Amela Prelic, Philip Zimmermann, Eckart Zitzler
    posted to classification clustering software by marcius on 2006-05-12 22:11:58 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine.
    BMC Bioinformatics, Vol. 6 (2005)
    by C Xue, F Li, T He, GP Liu, Y Li, X Zhang
    posted to bioinformatics classification microrna ncrna rna sequence-structure by marcius on 2006-03-02 00:37:24 as ** along with 1 person and 2 groups mtagaya BioinfoCIPF SGU-CIPF
  • New screening tools for lead compound identification
    Nat Chem Biol, Vol. 1, No. 3. (2005), pp. 125-125.
    by Tomi K Sawyer
    posted to classification docking drug review by marcius on 2006-02-24 00:19:11 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • A new progressive-iterative algorithm for multiple structure alignment.
    Bioinformatics (7 June 2005)
    by Dmitry Lupyan, Alejandra Leo-Macias, Angel R R Ortiz
    posted to bioinformatics classification clustering structure_alignment by marcius on 2006-02-23 19:53:53 as ** along with 2 people and 4 groups ana dimka structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Protein function prediction via graph kernels.
    Bioinformatics, Vol. 21, No. suppl_1. (1 June 2005)
    by Karsten MM Borgwardt, Cheng, Stefan Schönauer, Sv NV Vishwanathan, Alex JJ Smola, Hans-Peter P Kriegel
    posted to bioinformatics classification clustering protein_function by marcius on 2006-02-17 20:36:39 as ** along with 7 people and 4 groups tmmurali okarsligil vavi lfriedl eweaver kt wnpx kdl Bioinformatics BioinfoCIPF SGU-CIPF
  • The Relationship Between Domain Duplication and Recombination
    Journal of Molecular Biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365.
    by Christine Vogel, Sarah A Teichmann, Jose Pereira-Leal
    posted to bioinformatics classification folding protein_domains by marcius on 2006-01-27 01:16:19 as ** along with 5 people and 4 groups ana tny cjeans martainn mdimon structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Characterization of disease-associated single amino acid polymorphisms in terms of sequence and structure properties.
    J Mol Biol, Vol. 315, No. 4. (25 January 2002), pp. 771-786.
    by C Ferrer-Costa, M Orozco, X de la Cruz
    posted to bioinformatics classification protein protein_structure snp by marcius on 2006-01-17 19:13:45 as ** along with 1 person and 3 groups caporaso biomedical-nlp BioinfoCIPF SGU-CIPF
  • Sequence-based prediction of pathological mutations.
    Proteins, Vol. 57, No. 4. (1 December 2004), pp. 811-819.
    by C Ferrer-Costa, M Orozco, X de la Cruz
    posted to bioinformatics classification protein snp by marcius on 2006-01-17 19:13:07 as ** along with 1 person and 2 groups chrn BioinfoCIPF SGU-CIPF
  • Use of bioinformatics tools for the annotation of disease-associated mutations in animal models.
    Proteins (5 October 2005)
    by Carles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz
    posted to bioinformatics classification snp by marcius on 2006-01-17 19:12:42 as ** along with 1 person and 2 groups chrn BioinfoCIPF SGU-CIPF
  • Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information.
    Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 2988-2993.
    by F Al-Shahrour, R Díaz-Uriarte, J Dopazo
    posted to bioinformatics classification protein_function by marcius on 2006-01-17 19:11:48 as ** along with 4 people and 2 groups eweaver rdiaz ealloza Garamonfok BioinfoCIPF SGU-CIPF
  • Sequence-based heuristics for faster annotation of non-coding RNA families
    Bioinformatics, Vol. 22, No. 1. (1 January 2006), pp. 35-39.
    by Zasha Weinberg, Walter L Ruzzo
    posted to bioinformatics classification clustering ncrna by marcius on 2006-01-12 19:05:33 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • The evolution of protein structures.
    Cold Spring Harb Symp Quant Biol, Vol. 52 (1987), pp. 399-405.
    by C Chothia, AM Lesk
    posted to classification evolution protein_structure by marcius on 2005-12-28 11:49:42 as ** along with 1 person and 2 groups penka BioinfoCIPF SGU-CIPF
  • A complete conformational map for RNA.
    J Mol Biol, Vol. 291, No. 2. (13 August 1999), pp. 313-327.
    by VL Murthy, R Srinivasan, DE Draper, GD Rose
    posted to biophysics classification rna rotamers structure by marcius on 2005-12-28 11:35:09 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Structural similarity to bridge sequence space: finding new families on the bridges.
    Protein Sci, Vol. 14, No. 5. (May 2005), pp. 1305-1314.
    by PK Shah, P Aloy, P Bork, RB Russell
    posted to bioinformatics classification clustering protein_structure structural_genomics by marcius on 2005-10-28 19:11:21 as *** along with 2 people and 2 groups eweaver drastic BioinfoCIPF SGU-CIPF
  • Fragnostic: walking through protein structure space.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by I Friedberg, A Godzik
    posted to bioinformatics classification clustering protein_fragments protein_structure by marcius on 2005-10-23 09:49:10 as read along with 7 people and 4 groups ana barry pansapiens aalibes Einat alexg eweaver structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • How do side chains orient globally in protein structures?
    Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 3. (8 September 2005), pp. 513-522.
    by Aimin Yan, Robert L Jernigan
    posted to classification computational_biology protein_structure side_chains by marcius on 2005-10-23 02:54:16 as ** along with 2 people and 2 groups aqeel blackbart BioinfoCIPF SGU-CIPF
  • Data clustering: a review
    ACM Comput. Surv., Vol. 31, No. 3. (September 1999), pp. 264-323.
    by AK Jain, MN Murty, PJ Flynn
    posted to classification clustering machine_learning review by marcius on 2005-10-22 00:57:45 as ** along with 44 people and 14 groups iraklis tnhh flaviovdf dragonrez AbnerCYH mercutio egh ericyu karbak dgruiz pdlug thsant mapio mhay davidbrooks imouthesmp dfrankow rahul stagediver sterovetta sangeetha chadhogg sdvillal dgront styliani alexhofmann gane5h ianturton bigbossman perceptron allmensch aviad_work julianpan atbrew sugarexpletive KillianKay mkolar sajan dvisoin theodora jcsilva furykerry koles paulovn video_retrieval kdl GroupLens Bioinformatics SRL insilicodrug BioinfoCIPF SGU-CIPF MScResearchRessources NDSiTransitRessources NDS106ProjectRessources NDSIntraVehicularResearch ahat Community_SSTZ
  • ROCR: visualizing classifier performance in R.
    Bioinformatics (11 August 2005)
    by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer
    posted to classification servers software by marcius on 2005-10-21 08:28:13 as **** along with 9 people and 4 groups bertelsen BragilMassoud ana barry Ayest lyongu schlauchi gokhan za structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
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