marcius's classification [38 articles] Export

Recent papers added to marcius's library classified by the tag classification. You can also see everyone's classification.

Hide details

	RNA maps reveal new RNA classes and a possible function for pervasive transcription. [My Copy] Science (New York, N.Y.), Vol. 316, No. 5830. (8 June 2007), pp. 1484-1488. by Philipp Kapranov, Jill Cheng, Sujit Dike, et al.David A. Nix, Radharani Duttagupta, Aarron T. Willingham, Peter F. Stadler, Jana Hertel, Jörg Hackermüller, Ivo L. Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R. Gingeras posted to classification genome ncrna by marcius on 2007-06-15 11:16:53 as along with 15 people and 4 groups rsaito gdb maximilianh GustavoLacerda alexg dpollard xico mtagaya rdiaz djkt stajich mathijsv asddd elfar xingxu EisenLab WetBiology BioinfoCIPF SGU-CIPF
	RNA conformational classes. [My Copy] Nucleic Acids Res, Vol. 32, No. 5. (2004), pp. 1666-1677. by B. Schneider, Z. Morávek, H. M. Berman posted to biophysics classification rna rotamers by marcius on 2007-06-12 12:55:21 as along with 2 people and 2 groups svozil emidio_capriotti BioinfoCIPF SGU-CIPF
	On the relationship between sequence and structure similarities in proteomics [My Copy] Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 717-723. by K. Evgeny posted to bioinformatics classification sequence-structure by marcius on 2007-04-12 10:48:28 as along with 2 people and 2 groups phoenixzxl penka BioinfoCIPF SGU-CIPF
	Sequence comparison by sequence harmony identifies subtype-specific functional sites. [My Copy] Nucleic acids research, Vol. 34, No. 22. (December 2006), pp. 6540-6548. by W. Pirovano, K. A. Feenstra, J. Heringa posted to bioinformatics classification function protein sequence_alignment by marcius on 2007-01-03 13:02:03 as along with 4 people and 2 groups mgomes jameswasmuth sriram_s marti BioinfoCIPF SGU-CIPF
	RNAs everywhere: genome-wide annotation of structured RNAs. [My Copy] J Exp Zoolog B Mol Dev Evol (14 December 2006) by Rolf Backofen, Stephan H H. Bernhart, Christoph Flamm, et al.Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L L. Hofacker, Kristin Missal, Axel Mosig, Sonja J J. Prohaska, Dominic Rose, Peter F F. Stadler, Andrea Tanzer, Stefan Washietl, Sebastian Will posted to classification review rna by marcius on 2007-01-03 12:59:57 as along with 12 people and 5 groups NicholasErho jfr bala eckart_bindewald tardigrade andersbj penka cdawson ilh raylim jayster4 maralena microRNA BioinfoCIPF SGU-CIPF DictyosteliumGroup GIG
	Variability and memory of protein levels in human cells [My Copy] Nature (19 November 2006) by Alex Sigal, Ron Milo, Ariel Cohen, et al.Naama Geva-Zatorsky, Yael Klein, Yuvalal Liron, Nitzan Rosenfeld, Tamar Danon, Natalie Perzov, Uri Alon posted to classification protein systems_biology by marcius on 2006-11-23 11:02:59 as along with 4 people and 3 groups icases jjray margaritis cjeans BioinfoCIPF SGU-CIPF TNT
	Sequence and structural differences between enzyme and nonenzyme homologs. [My Copy] Structure (Camb), Vol. 10, No. 10. (October 2002), pp. 1435-1451. by A. E. Todd, C. A. Orengo, J. M. Thornton posted to bioinformatics classification function protein by marcius on 2006-09-13 15:36:46 as along with 1 person and 2 groups matzke BioinfoCIPF SGU-CIPF
	Application of the RNA structure classification system, CSNA, to NMR structure determination. [My Copy] Nucleic Acids Res Suppl, No. 3. (2003), pp. 127-128. by S. Baba, A. Takasu, K. Watanabe, G. Kawai posted to classification ontology rna structure by marcius on 2006-09-13 15:19:00 as along with 1 person and 2 groups eckart_bindewald BioinfoCIPF SGU-CIPF
	Structural diversity of domain superfamilies in the CATH database. [My Copy] Journal of molecular biology, Vol. 360, No. 3. (14 July 2006), pp. 725-741. by Gabrielle A. Reeves, Timothy J. Dallman, Oliver C. Redfern, Adrian Akpor, Christine A. Orengo posted to classification databases structure by marcius on 2006-09-08 12:25:48 as along with 4 people and 5 groups martainn yuslinaz barry sobolevnrm structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF baker-group
	The RNA Ontology Consortium: an open invitation to the RNA community. [My Copy] RNA, Vol. 12, No. 4. (April 2006), pp. 533-541. by N. B. Leontis, R. B. Altman, H. M. Berman, et al.S. E. Brenner, J. W. Brown, D. R. Engelke, S. C. Harvey, S. R. Holbrook, F. Jossinet, S. E. Lewis, F. Major, D. H. Mathews, J. S. Richardson, J. R. Williamson, E. Westhof posted to bioinformatics classification clustering rna sequence structure by marcius on 2006-09-07 17:37:08 as along with 4 people and 2 groups toerst dullhunk debatebob reyez BioinfoCIPF SGU-CIPF
	A top-level ontology of functions and its application in the Open Biomedical Ontologies [My Copy] Bioinformatics, Vol. 22, No. 14. (July 2006), pp. e66-e73. by P. Burek, R. Hoehndorf, F. Loebe, J. Visagie, H. Herre, J. Kelso posted to classification function protein by marcius on 2006-08-01 11:49:45 as along with 1 person and 2 groups ealloza BioinfoCIPF SGU-CIPF
	miRBase: microRNA sequences, targets and gene nomenclature. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006), pp. D140-144. by Sam Griffiths-Jones, Russell J. Grocock, Stijn van Dongen, Alex Bateman, Anton J. Enright posted to classification databases microrna servers by marcius on 2006-07-26 14:39:01 as along with 13 people and 3 groups shazo fishtank homonecloco antonkratz giovenko eckart_bindewald tardigrade cdawson ealloza Garamonfok natstreet maralena elfar BioinfoCIPF SGU-CIPF GIG
	PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by L. Conde, J. M. Vaquerizas, H. Dopazo, et al.L. Arbiza, J. Reumers, F. Rousseau, J. Schymkowitz, J. Dopazo posted to bioinformatics classification servers snp by marcius on 2006-07-20 12:29:31 as along with 2 people and 2 groups hdopazo AlexanderPico BioinfoCIPF SGU-CIPF
	Emergence of protein fold families through rational design. [My Copy] PLoS Comput Biol, Vol. 2, No. 7. (7 July 2006) by F. Ding, N. V. Dokholyan, E. Shakhnovich posted to biophysics classification protein_domains by marcius on 2006-07-19 10:40:04 as along with 2 people and 2 groups insectopalo kgutwin BioinfoCIPF SGU-CIPF
	Functional Classification Using Phylogenomic Inference [My Copy] PLoS Comput Biol, Vol. 2, No. 6. (30 June 2006), e77. by Duncan Brown, Kimmen Sjölander posted to bioinformatics classification evolution phylogeny by marcius on 2006-07-19 10:36:11 as along with 5 people and 2 groups sharpton sgoetz druvus giovenko jhc BioinfoCIPF SGU-CIPF
	microRNA target predictions in animals [My Copy] Nature Genetics, Vol. 38 Suppl 1, No. 6s. (30 May 2006), pp. S8-S13. by Nikolaus Rajewsky posted to bioinformatics classification microrna review by marcius on 2006-07-18 17:10:55 as along with 12 people and 5 groups danaiancu thegoose Stew jfr balicea andersbj mtagaya chenlc03 Garamonfok physics heliopais maralena Bioinformatics - CRUK Bioinformatics microRNA BioinfoCIPF SGU-CIPF
	Conservation and divergence of plant microRNA genes [My Copy] The Plant Journal, Vol. 46, No. 2. (April 2006), pp. 243-259. by Baohong Zhang, Xiaoping Pan, Charles H. Cannon, George P. Cobb, Todd A. Anderson posted to classification evolution microrna plant by marcius on 2006-07-13 14:04:46 as along with 6 people and 4 groups megraw dandaman natstreet mortenlindow andersbj cdawson microRNA BioinfoCIPF SGU-CIPF GIG
	MicroRNA enrichment among short ultraconserved sequences in insects [My Copy] Nucleic Acids Research, Vol. 34, No. 9. (2006), pp. e65-e65. by Tran, T., Havlak, P., Miller, J. posted to bioinformatics classification microrna by marcius on 2006-07-13 10:31:29 as along with 2 groups BioinfoCIPF SGU-CIPF
	Candidates for Novel RNA Topologies [My Copy] Journal of Molecular Biology, Vol. 341, No. 5. (27 August 2004), pp. 1129-1144. by Namhee Kim, Nahum Shiffeldrim, Hin H. Gan, Tamar Schlick posted to bioinformatics classification clustering rna structure by marcius on 2006-05-19 22:17:31 as along with 2 people and 3 groups eckart_bindewald condon beta BioinfoCIPF SGU-CIPF
	Fast protein classification with multiple networks. [My Copy] Bioinformatics, Vol. 21 Suppl 2 (1 September 2005) by K. Tsuda, H. Shin, B. Schölkopf posted to bioinformatics classification protein by marcius on 2006-05-15 22:41:32 as along with 3 people and 2 groups ajbattle dwf bootsy BioinfoCIPF SGU-CIPF
	BicAT: a biclustering analysis toolbox [My Copy] Bioinformatics, Vol. 22, No. 10. (15 May 2006), pp. 1282-1283. by Simon Barkow, Stefan Bleuler, Amela Prelic, Philip Zimmermann, Eckart Zitzler posted to classification clustering software by marcius on 2006-05-12 22:11:58 as along with 5 people and 2 groups meanerelk tmmurali ilyashl robert85 tvdbulck BioinfoCIPF SGU-CIPF
	Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by C. Xue, F. Li, T. He, G. P. Liu, Y. Li, X. Zhang posted to bioinformatics classification microrna ncrna rna sequence-structure by marcius on 2006-03-02 00:37:24 as along with 1 person and 2 groups mtagaya BioinfoCIPF SGU-CIPF
	New screening tools for lead compound identification [My Copy] Nat Chem Biol, Vol. 1, No. 3. (2005), pp. 125-125. by Tomi K. Sawyer posted to classification docking drug review by marcius on 2006-02-24 00:19:11 as along with 2 groups BioinfoCIPF SGU-CIPF
	A new progressive-iterative algorithm for multiple structure alignment. [My Copy] Bioinformatics (7 June 2005) by Dmitry Lupyan, Alejandra Leo-Macias, Angel R R. Ortiz posted to bioinformatics classification clustering structure_alignment by marcius on 2006-02-23 19:53:53 as along with 5 people and 4 groups tomjad sebk ana dimka tjimenez structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Protein function prediction via graph kernels. [My Copy] Bioinformatics, Vol. 21, No. suppl_1. (1 June 2005) by Karsten M. M. Borgwardt, Cheng, Stefan Schönauer, Sv N. V. Vishwanathan, Alex J. J. Smola, Hans-Peter P. Kriegel posted to bioinformatics classification clustering protein_function by marcius on 2006-02-17 20:36:39 as along with 9 people and 4 groups ajbattle MarcoAlvarez tmmurali okarsligil vavi lfriedl eweaver kt wnpx kdl Bioinformatics BioinfoCIPF SGU-CIPF
	The relationship between domain duplication and recombination. [My Copy] Journal of molecular biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365. by Christine Vogel, Sarah A. Teichmann, Jose Pereira-Leal posted to bioinformatics classification folding protein_domains by marcius on 2006-01-27 01:16:19 as along with 5 people and 4 groups ana tny cjeans martainn mdimon structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Characterization of disease-associated single amino acid polymorphisms in terms of sequence and structure properties. [My Copy] Journal of molecular biology, Vol. 315, No. 4. (25 January 2002), pp. 771-786. by Carles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz posted to bioinformatics classification protein protein_structure snp by marcius on 2006-01-17 19:13:45 as along with 1 person and 4 groups caporaso References for 3DSim paper biomedical-nlp BioinfoCIPF SGU-CIPF
	Sequence-based prediction of pathological mutations. [My Copy] Proteins, Vol. 57, No. 4. (1 December 2004), pp. 811-819. by C. Ferrer-Costa, M. Orozco, X. de la Cruz posted to bioinformatics classification protein snp by marcius on 2006-01-17 19:13:07 as along with 1 person and 3 groups chrn References for 3DSim paper BioinfoCIPF SGU-CIPF
	Use of bioinformatics tools for the annotation of disease-associated mutations in animal models. [My Copy] Proteins (5 October 2005) by Carles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz posted to bioinformatics classification snp by marcius on 2006-01-17 19:12:42 as along with 1 person and 2 groups chrn BioinfoCIPF SGU-CIPF
	Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information. [My Copy] Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 2988-2993. by F. Al-Shahrour, R. Díaz-Uriarte, J. Dopazo posted to bioinformatics classification protein_function by marcius on 2006-01-17 19:11:48 as along with 4 people and 2 groups eweaver rdiaz ealloza Garamonfok BioinfoCIPF SGU-CIPF
	Sequence-based heuristics for faster annotation of non-coding RNA families [My Copy] Bioinformatics, Vol. 22, No. 1. (1 January 2006), pp. 35-39. by Zasha Weinberg, Walter L. Ruzzo posted to bioinformatics classification clustering ncrna by marcius on 2006-01-12 19:05:33 as along with 2 groups BioinfoCIPF SGU-CIPF
	The evolution of protein structures. [My Copy] Cold Spring Harb Symp Quant Biol, Vol. 52 (1987), pp. 399-405. by C. Chothia, A. M. Lesk posted to classification evolution protein_structure by marcius on 2005-12-28 11:49:42 as along with 1 person and 2 groups penka BioinfoCIPF SGU-CIPF
	A complete conformational map for RNA. [My Copy] J Mol Biol, Vol. 291, No. 2. (13 August 1999), pp. 313-327. by V. L. Murthy, R. Srinivasan, D. E. Draper, G. D. Rose posted to biophysics classification rna rotamers structure by marcius on 2005-12-28 11:35:09 as along with 2 groups BioinfoCIPF SGU-CIPF
	Structural similarity to bridge sequence space: finding new families on the bridges. [My Copy] Protein science : a publication of the Protein Society, Vol. 14, No. 5. (May 2005), pp. 1305-1314. by Parantu K. Shah, Patrick Aloy, Peer Bork, Robert B. Russell posted to bioinformatics classification clustering protein_structure structural_genomics by marcius on 2005-10-28 19:11:21 as along with 3 people and 2 groups yuslinaz eweaver drastic BioinfoCIPF SGU-CIPF
	Fragnostic: walking through protein structure space. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by I. Friedberg, A. Godzik posted to bioinformatics classification clustering protein_fragments protein_structure by marcius on 2005-10-23 09:49:10 as along with 8 people and 4 groups dfdong ana barry pansapiens aalibes Einat alexg eweaver structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	How do side chains orient globally in protein structures? [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 3. (8 September 2005), pp. 513-522. by Aimin Yan, Robert L. Jernigan posted to classification computational_biology protein_structure side_chains by marcius on 2005-10-23 02:54:16 as along with 2 people and 2 groups aqeel blackbart BioinfoCIPF SGU-CIPF
	Data clustering: a review [My Copy] ACM Comput. Surv., Vol. 31, No. 3. (September 1999), pp. 264-323. by A. K. Jain, M. N. Murty, P. J. Flynn posted to classification clustering machine_learning review by marcius on 2005-10-22 00:57:45 as along with 64 people and 15 groups krapnik ulmer emailhy erikv thegoose urvoy stharward thefillm operon avoregnitiv fer votis pick600 pbk nhoussos qwermish svozil takeha-e eabait mthomure mercutio egh ericyu karbak dgruiz pdlug thsant mapio mhay davidbrooks imouthesmp dfrankow rahul stagediver sterovetta sangeetha chadhogg sdvillal dgront styliani alexhofmann gane5h ianturton bigbossman perceptron allmensch aviad_work julianpan atbrew sugarexpletive KillianKay mkolar sajan dvisoin theodora jcsilva furykerry koles paulovn AbnerCYH tnhh flaviovdf dragonrez iraklis elan video_retrieval kdl GroupLens Bioinformatics SRL insilicodrug BioinfoCIPF SGU-CIPF MScResearchRessources NDSiTransitRessources NDS106ProjectRessources NDSIntraVehicularResearch ahat Community_SSTZ
	ROCR: visualizing classifier performance in R. [My Copy] Bioinformatics (11 August 2005) by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer posted to classification servers software by marcius on 2005-10-21 08:28:13 as along with 12 people and 4 groups dfdong natstreet druvus BragilMassoud ana barry Ayest lyongu schlauchi gokhan za bertelsen structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF

Note: You may cite this page as: http://www.citeulike.org/user/marcius/tag/classification

rna	213
bioinformatics	196
review	127
biophysics	90
protein_structure	86
structure	86
evolution	86
structure_prediction	64
algorithms	56
computational_biology	53
secondary_structure	53
protein	43
folding	41
classification	38
ncrna	35
casp	35
drug	32
docking	32
protein_interactions	31
genome	30
function	29
microrna	27
cafasp	26
sequence_alignment	25
protein_function	24
software	23
views	22
servers	22
comparative_modeling	19
model_assessment	19
statistical_potentials	19
biology	18
structural_genomics	18
databases	17
ribosome	16
nmr	16
disease	16
protein_domains	15
ligand	15
protein_folding	15
bioengineering	14
clustering	14
protein_fragments	14
ab-initio	12
structure_alignment	11
genes	11
prediction	11
dna	10
statistics	9
snp	9
alignment	9
model_evaluation	8
membrane_protein	7
experimental	7
gene_expression	6
systems_biology	6
microarray	6
phylogeny	6
virus	5
mechano_receptors	5
foce_field	5
sequence	5
protein_threading	5
motif	5
molecular_dynamics	5
text_mining	4
ribozyme	4
discovery	4
rotamers	4
sequence-structure	4
protein_complexes	3
cancer	3
comparative_docking	3
server	3
news	3
human	3
interaction	3
meeting	3
immunology	2
programming	2
hypotesis	2
allosteric	2
proteomics	2
editorial	2
pleiotropy	2
pdb	2
hts	2
trypsin	1
ontology	1
loop_modeling	1
proteases	1
metabolomics	1
opensourcebiology	1
nucleosome	1
side_chains	1
protein_disorder	1
protein_design	1
nanotechnology	1
membrane	1
stability	1
disulfide	1
position	1
web20	1
malaria	1
congress	1
synthetic_biology	1
fold	1
glyco	1
dynamics	1
machine_learning	1
mysql	1
aminoacid_alphabets	1
metagenomics	1
php	1
molecular_mimicry	1
stem_cells	1
consensus	1
plant	1

marcius's classification [38 articles] Export

marcius's tags