marcius's comparative_modeling [19 articles] Export

Recent papers added to marcius's library classified by the tag comparative_modeling. You can also see everyone's comparative_modeling.

Hide details

	Three-dimensional comparative modeling of RNA. [My Copy] Nucleic Acids Symp Ser, No. 36. (1997), pp. 69-71. by C. Zwieb, F. Müller posted to algorithms bioinformatics comparative_modeling rna by marcius on 2006-10-27 21:31:25 as along with 2 groups BioinfoCIPF SGU-CIPF
	Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection [My Copy] Nucleic Acids Research, Vol. 34, No. 17. (October 2006), pp. e112-e112. by D. Chivian, D. Baker posted to algorithms bioinformatics comparative_modeling sequence_alignment by marcius on 2006-10-25 21:43:08 as along with 1 person and 2 groups j3xucite BioinfoCIPF SGU-CIPF
	Structural Modeling of Protein Interactions by Analogy: Application to PSD-95 [My Copy] PLoS Computational Biology, Vol. preprint, No. 2006. (1 October 2006) by Dmitry Korkin, Fred P. Davis, Frank Alber, et al.Tinh Luong, Min-Yi Shen, Vladan Lucic, Mary B. Kennedy, Andrej Sali posted to algorithms comparative_docking comparative_modeling protein_domains protein_interactions by marcius on 2006-10-22 12:12:40 as along with 2 groups BioinfoCIPF SGU-CIPF
	How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins [My Copy] Journal of Molecular Biology, Vol. 136, No. 3. (25 January 1980), pp. 225-230. by Arthur M. Lesk, Cyrus Chothia posted to biophysics comparative_modeling evolution protein_structure by marcius on 2006-04-30 01:12:36 as along with 2 people and 4 groups ana barry structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Derivation of rules for comparative protein modeling from a database of protein structure alignments. [My Copy] Protein Sci, Vol. 3, No. 9. (September 1994), pp. 1582-1596. by A. Sali, J. P. Overington posted to bioinformatics biophysics comparative_modeling structure_prediction by marcius on 2006-04-08 07:26:12 as along with 2 people and 4 groups ana bicko structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	All are not equal: A benchmark of different homology modeling programs [My Copy] Protein Sci, Vol. 14, No. 5. (1 May 2005), pp. 1315-1327. by Bjorn Wallner, Arne Elofsson posted to cafasp casp comparative_modeling by marcius on 2006-03-02 03:40:24 as along with 6 people and 2 groups cdeane karbak eweaver BioNica rsantana hmk BioinfoCIPF SGU-CIPF
	Correlation between evolutionary structural development and protein folding. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 52. (27 December 2005), pp. 18950-18955. by C. Nagao, T. P. Terada, T. Yomo, M. Sasai posted to biophysics comparative_modeling evolution protein_folding structure by marcius on 2006-02-09 01:09:32 as along with 2 people and 2 groups apaydin shuns BioinfoCIPF SGU-CIPF
	Practical lessons from protein structure prediction. [My Copy] Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1874-1891. by K. Ginalski, N. V. Grishin, A. Godzik, L. Rychlewski posted to cafasp casp comparative_modeling model_assessment structure_prediction by marcius on 2005-12-22 06:53:06 as along with 8 people and 4 groups mcbla ana aalibes thaliana okarsligil duartemolha dgront mirzazadeh structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	RNA 3D structure prediction: (1) assessing rna 3D structure similarity from 2D structure similarity. [My Copy] Genome Inform Ser Workshop Genome Inform, Vol. 15, No. 2. (2004), pp. 112-120. by J. E. Barreda D C, Y. Shigenobu, E. Ichiishi, C. A. Del Carpio M posted to casp comparative_modeling rna secondary_structure structure by marcius on 2005-12-20 06:19:07 as along with 1 person and 2 groups eckart_bindewald BioinfoCIPF SGU-CIPF
	Progress in Modeling of Protein Structures and Interactions [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642. by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker posted to ab-initio bioinformatics biophysics cafasp comparative_modeling review structure_prediction by marcius on 2005-10-28 00:14:41 as along with 18 people and 3 groups krapnik rabio ucbcjbm paddydu flbarroso thaliana jwm vavi bicko KyuhoLee eweaver tny nickolay dgront rsantana mirzazadeh insectopalo barry BioinfoCIPF SGU-CIPF structural_bioinformatics
	Convergent evolution as a mechanism for pathogenic adaptation. [My Copy] Trends Microbiol (7 September 2005) by Sergey Sikora, Alex Strongin, Adam Godzik posted to comparative_modeling computational_biology evolution molecular_mimicry by marcius on 2005-10-26 04:17:30 as along with 1 person and 4 groups ana structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models. [My Copy] Proteins (26 September 2005) by Andrzej Koliński, Janusz M M. Bujnicki posted to ab-initio bioinformatics comparative_modeling model_assessment structure_prediction by marcius on 2005-10-22 09:12:12 as along with 4 people and 2 groups mijam mcbla nigham dgront BioinfoCIPF SGU-CIPF
	Assessment of predictions submitted for the CASP6 comparative modelling category. [My Copy] Proteins (26 September 2005) by Michael Tress, Iakes Ezkurdia, Osvaldo Graña, Gonzalo López, Alfonso Valencia posted to cafasp casp comparative_modeling protein_structure structure_prediction by marcius on 2005-10-22 08:59:31 as along with 3 people and 2 groups nigham ffranca magia215 BioinfoCIPF SGU-CIPF
	Prediction of novel and analogous folds using fragment assembly and fold recognition. [My Copy] Proteins (26 September 2005) by D T T. Jones, K Bryson, A Coleman, et al.L J J. McGuffin, M I I. Sadowski, J S S. Sodhi, J J J. Ward posted to cafasp casp comparative_modeling model_assessment protein_fragments protein_structure structure_prediction by marcius on 2005-10-22 08:57:29 as along with 2 groups BioinfoCIPF SGU-CIPF
	SPARKS 2 and SP(3) servers in CASP 6. [My Copy] Proteins (26 September 2005) by Hongyi Zhou, Yaoqi Zhou posted to cafasp casp comparative_modeling model_assessment protein_structure structure_prediction by marcius on 2005-10-22 08:56:27 as along with 1 person and 2 groups j3xucite BioinfoCIPF SGU-CIPF
	Evaluating the usefulness of protein structure models for molecular replacement. [My Copy] Bioinformatics, Vol. 21, No. suppl_2. (1 September 2005) by Alejandro Giorgetti, Domenico Raimondo, Adriana Erica E. Miele, Anna Tramontano posted to comparative_modeling protein_structure by marcius on 2005-10-22 08:54:54 as along with 1 person and 2 groups ffranca BioinfoCIPF SGU-CIPF
	Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 43. (26 October 2004), pp. 15346-15351. by B. Qian, A. R. Ortiz, D. Baker posted to biophysics clustering comparative_modeling protein_structure structure_prediction by marcius on 2005-10-22 05:00:32 as along with 6 people and 4 groups krapnik aqeel ana barry lna dgront structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Protein structure comparison by alignment of distance matrices [My Copy] Journal of Molecular Biology, No. 223. (1993), pp. 123-128. by L. Holm, C. Sander posted to comparative_modeling protein_structure sequence_alignment by marcius on 2005-10-22 03:09:40 as along with 2 groups BioinfoCIPF SGU-CIPF
	Comparative protein modelling by satisfaction of spatial restraints. [My Copy] J Mol Biol, Vol. 234, No. 3. (December 1993), pp. 779-815. by A. Sali, T. L. Blundell posted to comparative_modeling by marcius on 2005-10-22 02:57:26 as along with 2 groups BioinfoCIPF SGU-CIPF

Note: You may cite this page as: http://www.citeulike.org/user/marcius/tag/comparative_modeling

rna	213
bioinformatics	196
review	127
biophysics	90
protein_structure	86
structure	86
evolution	86
structure_prediction	64
algorithms	56
computational_biology	53
secondary_structure	53
protein	43
folding	41
classification	38
ncrna	35
casp	35
drug	32
docking	32
protein_interactions	31
genome	30
function	29
microrna	27
cafasp	26
sequence_alignment	25
protein_function	24
software	23
views	22
servers	22
comparative_modeling	19
model_assessment	19
statistical_potentials	19
biology	18
structural_genomics	18
databases	17
ribosome	16
nmr	16
disease	16
protein_domains	15
ligand	15
protein_folding	15
bioengineering	14
clustering	14
protein_fragments	14
ab-initio	12
structure_alignment	11
genes	11
prediction	11
dna	10
statistics	9
snp	9
alignment	9
model_evaluation	8
membrane_protein	7
experimental	7
gene_expression	6
systems_biology	6
microarray	6
phylogeny	6
virus	5
mechano_receptors	5
foce_field	5
sequence	5
protein_threading	5
motif	5
molecular_dynamics	5
text_mining	4
ribozyme	4
discovery	4
rotamers	4
sequence-structure	4
protein_complexes	3
cancer	3
comparative_docking	3
server	3
news	3
human	3
interaction	3
meeting	3
immunology	2
programming	2
hypotesis	2
allosteric	2
proteomics	2
editorial	2
pleiotropy	2
pdb	2
hts	2
trypsin	1
ontology	1
loop_modeling	1
proteases	1
metabolomics	1
opensourcebiology	1
nucleosome	1
side_chains	1
protein_disorder	1
protein_design	1
nanotechnology	1
membrane	1
stability	1
disulfide	1
position	1
web20	1
malaria	1
congress	1
synthetic_biology	1
fold	1
glyco	1
dynamics	1
machine_learning	1
mysql	1
aminoacid_alphabets	1
metagenomics	1
php	1
molecular_mimicry	1
stem_cells	1
consensus	1
plant	1

marcius's comparative_modeling [19 articles] Export

marcius's tags