marcius's folding [41 articles] Export

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	Recent advances in the development and application of implicit solvent models in biomolecule simulations [My Copy] Current Opinion in Structural Biology, Vol. 14, No. 2. (April 2004), pp. 217-224. by M. Feig posted to biophysics foce_field folding protein_structure review by marcius on 2006-10-02 10:50:01 as along with 6 people and 2 groups flbarroso LamBras apostola ttjoseph gane5h RamuAnandakrishnan BioinfoCIPF SGU-CIPF
	Effective energy functions for protein structure prediction. [My Copy] Curr Opin Struct Biol, Vol. 10, No. 2. (April 2000), pp. 139-145. by T. Lazaridis, M. Karplus posted to biophysics foce_field folding protein_structure review by marcius on 2006-10-02 10:49:24 as along with 2 people and 2 groups karbak nigham BioinfoCIPF SGU-CIPF
	Empirical force fields for biological macromolecules: overview and issues. [My Copy] Journal of computational chemistry, Vol. 25, No. 13. (1 October 2004), pp. 1584-1604. by A. D. Mackerell posted to biophysics foce_field folding protein_structure review by marcius on 2006-10-02 10:47:07 as along with 8 people and 3 groups krapnik flbarroso whitead BragilMassoud dgront loison mirzazadeh AndreaColetta Jiang Research Group BioinfoCIPF SGU-CIPF
	Force fields for protein simulations. [My Copy] Adv Protein Chem, Vol. 66 (2003), pp. 27-85. by J. W. Ponder, D. A. Case posted to biophysics foce_field folding protein_structure review by marcius on 2006-10-02 10:46:40 as along with 4 people and 2 groups pavanghatty karbak papatonyhill hmk BioinfoCIPF SGU-CIPF
	Thermodynamics of protein folding: a microscopic view. [My Copy] Biophys Chem, Vol. 100, No. 1-3. (2003), pp. 367-395. by T. Lazaridis, M. Karplus posted to biophysics foce_field folding protein_structure review by marcius on 2006-10-02 10:46:31 as along with 1 person and 2 groups karbak BioinfoCIPF SGU-CIPF
	How do RNA folding algorithms work? [My Copy] Nature biotechnology, Vol. 22, No. 11. (November 2004), pp. 1457-1458. by S. R. Eddy posted to algorithms bioinformatics biophysics folding review rna by marcius on 2006-09-08 11:14:16 as along with 14 people and 2 groups guhjy heliopais mjoach ellarond evaf tardigrade mtagaya 3times3 cthachuk magnolia maralena guxiyou cambray austin BioinfoCIPF SGU-CIPF
	Efficient computation of RNA folding dynamics [My Copy] Journal of Physics A: Mathematical and General, Vol. 37, No. 17. (2004), pp. 4731-4741. by Michael T. Wolfinger, Andreas, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler posted to biophysics folding rna by marcius on 2006-07-24 17:47:12 as along with 2 people and 2 groups ilh mtw BioinfoCIPF SGU-CIPF
	Structural biologyProteins downhill all the way [My Copy] Nature, Vol. 442, No. 7100. (19 July 2006), pp. 255-256. by Jeffery W. Kelly posted to biophysics folding news protein_structure views by marcius on 2006-07-20 10:06:15 as along with 2 groups BioinfoCIPF SGU-CIPF
	Atom-by-atom analysis of global downhill protein folding [My Copy] Nature, Vol. 442, No. 7100. (14 June 2006), pp. 317-321. by Mourad Sadqi, David Fushman, Victor Muñoz posted to biophysics folding protein_structure by marcius on 2006-07-20 10:05:38 as along with 4 people and 2 groups wouterboomsma choonpeng gisle huyun110 BioinfoCIPF SGU-CIPF
	Co-transcriptional folding is encoded within RNA genes. [My Copy] BMC molecular biology, Vol. 5, No. 1. (6 August 2004) by Irmtraud M. Meyer, István Miklós posted to biophysics folding rna by marcius on 2006-07-18 12:23:54 as along with 5 people and 3 groups bpcusack evaf condon Hosna raylim beta BioinfoCIPF SGU-CIPF
	Strategies for RNA folding and assembly. [My Copy] Nat Rev Mol Cell Biol, Vol. 5, No. 11. (November 2004), pp. 908-919. by R. Schroeder, A. Barta, K. Semrad posted to biophysics folding review rna by marcius on 2006-07-13 10:25:25 as along with 2 people and 3 groups svozil condon beta BioinfoCIPF SGU-CIPF
	Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics. [My Copy] BMC bioinformatics, Vol. 5 (4 August 2004) by Jens Reeder, Robert Giegerich posted to biophysics folding rna secondary_structure by marcius on 2006-05-18 09:02:38 as along with 8 people and 3 groups haarcuba rb_india gzm55 guxiyou eckart_bindewald arcticrasta condon Hosna beta BioinfoCIPF SGU-CIPF
	Tertiary Motifs in RNA Structure and Folding. [My Copy] Angew Chem Int Ed Engl, Vol. 38, No. 16. (August 1999), pp. 2326-2343. by R. T. Batey, R. P. Rambo, J. A. Doudna posted to folding rna structure by marcius on 2006-05-18 00:21:04 as along with 3 people and 3 groups condon jarasch physics beta BioinfoCIPF SGU-CIPF
	Counterion Charge Density Determines the Position and Plasticity of RNA Folding Transition States [My Copy] Journal of Molecular Biology, Vol. 359, No. 2. (2 June 2006), pp. 446-454. by Eda Koculi, D. Thirumalai, Sarah A. Woodson posted to biophysics folding rna by marcius on 2006-05-17 00:38:30 as along with 2 groups BioinfoCIPF SGU-CIPF
	A complex adaptive systems approach to the kinetic folding of RNA. [My Copy] Biosystems, Vol. 82, No. 3. (December 2005), pp. 257-265. by W. Ndifon posted to biophysics folding rna by marcius on 2006-05-11 07:36:14 as along with 1 person and 2 groups arcticrasta BioinfoCIPF SGU-CIPF
	RDfolder: a web server for prediction of RNA secondary structure. [My Copy] Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004) by X. Ying, H. Luo, J. Luo, W. Li posted to bioinformatics folding rna secondary_structure servers by marcius on 2006-05-09 19:20:02 as along with 1 person and 2 groups arcticrasta BioinfoCIPF SGU-CIPF
	Memory efficient folding algorithms for circular RNA secondary structures [My Copy] Bioinformatics, Vol. 22, No. 10. (15 May 2006), pp. 1172-1176. by Ivo L. Hofacker, Peter F. Stadler posted to algorithms bioinformatics folding programming rna secondary_structure by marcius on 2006-05-09 03:57:20 as along with 1 person and 2 groups ilh BioinfoCIPF SGU-CIPF
	Complete suboptimal folding of RNA and the stability of secondary structures. [My Copy] Biopolymers, Vol. 49, No. 2. (February 1999), pp. 145-165. by S. Wuchty, W. Fontana, I. L. Hofacker, P. Schuster posted to biophysics folding rna secondary_structure by marcius on 2006-04-30 01:11:30 as along with 6 people and 2 groups rb_india heliopais alessandroparini eckart_bindewald arcticrasta ilh BioinfoCIPF SGU-CIPF
	Beyond kinetic traps in RNA folding [My Copy] Current Opinion in Structural Biology, Vol. 11, No. 3. (1 June 2001), pp. 309-314. by Daniel K. Treiber, James R. Williamson posted to biophysics folding rna by marcius on 2006-04-30 01:10:59 as along with 1 person and 3 groups condon beta BioinfoCIPF SGU-CIPF
	Stitching together RNA tertiary architectures [My Copy] Journal of Molecular Biology, Vol. 294, No. 4. (10 December 1999), pp. 829-849. by Thomas Hermann, Dinshaw J. Patel posted to biophysics folding rna structure by marcius on 2006-04-24 07:42:53 as along with 3 people and 3 groups ttjoseph condon jarasch beta BioinfoCIPF SGU-CIPF
	Predicting free energy landscapes for complexes of double-stranded chain molecules [My Copy] The Journal of Chemical Physics, Vol. 114, No. 9. (2001), pp. 4253-4266. by Wenbing Zhang, Shi J. Chen posted to biophysics computational_biology dna folding rna by marcius on 2006-04-21 22:11:14 as along with 1 person and 3 groups condon beta BioinfoCIPF SGU-CIPF
	Theory for the conformational changes of double-stranded chain molecules [My Copy] The Journal of Chemical Physics, Vol. 109, No. 11. (1998), pp. 4602-4616. by Shi J. Chen, Ken A. Dill posted to biophysics computational_biology dna folding rna by marcius on 2006-04-21 22:11:01 as along with 1 person and 3 groups condon beta BioinfoCIPF SGU-CIPF
	Statistical thermodynamics of double-stranded polymer molecules [My Copy] The Journal of Chemical Physics, Vol. 103, No. 13. (1995), pp. 5802-5813. by Shi J. Chen, Ken A. Dill posted to biophysics computational_biology dna folding rna by marcius on 2006-04-21 22:10:14 as along with 1 person and 3 groups condon beta BioinfoCIPF SGU-CIPF
	RNA folding energy landscapes [My Copy] PNAS, Vol. 97, No. 2. (18 January 2000), pp. 646-651. by Shi-Jie Chen, Ken A. Dill posted to biophysics folding rna by marcius on 2006-04-21 22:09:25 as along with 4 people and 3 groups ellarond condon mtw ARobson beta BioinfoCIPF SGU-CIPF
	A comparison of RNA folding measures [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (3 October 2005), 241. by Eva Freyhult, Paul Gardner, Vincent Moulton posted to biophysics folding rna by marcius on 2006-04-18 19:11:54 as along with 7 people and 4 groups homonecloco druvus imouthesmp eckart_bindewald mtagaya bsmagic Kiarostami Bioinformatics BioinfoCIPF bioinplant SGU-CIPF
	One Sequence, Two Ribozymes: Implications for the Emergence of New Ribozyme Folds [My Copy] Science, Vol. 289, No. 5478. (21 July 2000), pp. 448-452. by Erik A. Schultes, David P. Bartel posted to folding ribozyme by marcius on 2006-04-18 19:11:35 as along with 3 people and 3 groups condon Hosna austin beta BioinfoCIPF SGU-CIPF
	Topology of pseudoknotted homopolymers. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 73, No. 3 Pt 1. (March 2006) by G. Vernizzi, P. Ribeca, H. Orland, A. Zee posted to folding ncrna rna by marcius on 2006-04-18 00:18:42 as along with 2 groups BioinfoCIPF SGU-CIPF
	STRATEGIES FOR RNA FOLDING AND ASSEMBLY [My Copy] Nat Rev Mol Cell Biol, Vol. 5, No. 11. (November 2004), pp. 908-919. by Renee Schroeder, Andrea Barta, Katharina Semrad posted to folding review rna by marcius on 2006-04-17 04:34:02 as along with 3 people and 3 groups cactus condon kieran101 beta BioinfoCIPF SGU-CIPF
	Capturing expert knowledge with argumentation: a case study in bioinformatics [My Copy] Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 924-933. by Benjamin R. Jefferys, Lawrence A. Kelley, Marek J. Sergot, John Fox, Michael J. Sternberg posted to bioinformatics folding servers by marcius on 2006-04-08 00:06:27 as along with 3 people and 2 groups mdimmic vavi eweaver BioinfoCIPF SGU-CIPF
	Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. [My Copy] Nucleic acids research, Vol. 9, No. 1. (10 January 1981), pp. 133-148. by M. Zuker, P. Stiegler posted to ab-initio biophysics folding rna by marcius on 2006-03-18 20:59:28 as along with 11 people and 2 groups rb_india NicholasErho saunders agrobledo gzm55 heliopais evaf arcticrasta mtagaya Hosna guxiyou BioinfoCIPF SGU-CIPF
	Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency [My Copy] RNA, Vol. 11, No. 5. (1 May 2005), pp. 578-591. by Peter Clote, Fabrizio Ferre, Evangelos Kranakis, Danny Krizanc posted to computational_biology folding rna by marcius on 2006-03-17 07:35:58 as along with 3 people and 2 groups NicholasErho arcticrasta elfar BioinfoCIPF SGU-CIPF
	Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function. [My Copy] J Mol Biol, Vol. 291, No. 1. (6 August 1999), pp. 177-196. by L. A. Mirny, E. I. Shakhnovich posted to biophysics evolution folding by marcius on 2006-03-14 17:21:55 as along with 4 people and 4 groups dfdong ana barry Einat structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	How RNA folds. [My Copy] J Mol Biol, Vol. 293, No. 2. (22 October 1999), pp. 271-281. by I. Tinoco, C. Bustamante posted to biophysics evolution folding rna by marcius on 2006-03-06 23:02:38 as along with 10 people and 3 groups rb_india eskay dayjm eckart_bindewald perrywoo arcticrasta condon Hosna apop physics beta BioinfoCIPF SGU-CIPF
	On the Evolution of Protein Folds: Are Similar Motifs in Different Protein Folds the Result of Convergence, Insertion, or Relics of an Ancient Peptide World? [My Copy] Journal of Structural Biology, Vol. 134, No. 2-3. (May 2001), pp. 191-203. by A. Lupas posted to bioinformatics evolution folding protein_domains protein_fragments by marcius on 2006-02-24 06:52:09 as along with 2 people and 2 groups yylin chad_davis BioinfoCIPF SGU-CIPF
	The relationship between domain duplication and recombination. [My Copy] Journal of molecular biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365. by Christine Vogel, Sarah A. Teichmann, Jose Pereira-Leal posted to bioinformatics classification folding protein_domains by marcius on 2006-01-27 01:16:19 as along with 5 people and 4 groups ana tny cjeans martainn mdimon structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Creation of GPCR-based chemical sensors by directed evolution in yeast [My Copy] Protein Engineering, Design and Selection, Vol. 19, No. 1. (January 2006), pp. 1-8. by Addison D. Ault, James R. Broach posted to biophysics evolution folding by marcius on 2005-12-28 09:10:05 as along with 2 groups BioinfoCIPF SGU-CIPF
	Are proteins made from a limited parts list? [My Copy] Trends Biochem Sci, Vol. 30, No. 2. (February 2005), pp. 73-80. by N. C. Fitzkee, P. J. Fleming, H. Gong, N. Panasik, T. O. Street, G. D. Rose posted to folding protein_fragments by marcius on 2005-12-22 20:38:35 as along with 2 people and 2 groups kentsis owarburg BioinfoCIPF SGU-CIPF
	Protein Structure Prediction: Inroads to Biology [My Copy] Molecular Cell, Vol. 20, No. 6. (22 December 2005), pp. 811-819. by Donald Petrey, Barry Honig posted to bioinformatics folding protein_structure review structure_prediction by marcius on 2005-12-22 00:53:03 as along with 4 people and 2 groups pansapiens vavi penka Haggan BioinfoCIPF SGU-CIPF
	RNA folding: models and perspectives. [My Copy] Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 309-316. by T. R. Sosnick, T. Pan posted to biophysics computational_biology folding rna structure by marcius on 2005-12-20 01:07:48 as along with 3 people and 2 groups evaf Hosna austin BioinfoCIPF SGU-CIPF
	Reduced contact order and RNA folding rates. [My Copy] J Mol Biol, Vol. 342, No. 5. (1 October 2004), pp. 1359-1365. by T. R. Sosnick, T. Pan posted to folding rna structure by marcius on 2005-12-20 01:06:56 as along with 2 people and 2 groups evaf emidio_capriotti BioinfoCIPF SGU-CIPF
	RNA folding and unfolding. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 374-379. by B. Onoa, I. Tinoco posted to biophysics folding rna structure by marcius on 2005-12-20 01:06:32 as along with 7 people and 3 groups rb_india evaf arcticrasta condon Hosna emidio_capriotti apop beta BioinfoCIPF SGU-CIPF

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review	127
biophysics	90
protein_structure	86
structure	86
evolution	86
structure_prediction	64
algorithms	56
computational_biology	53
secondary_structure	53
protein	43
folding	41
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ncrna	35
casp	35
drug	32
docking	32
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genome	30
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microrna	27
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sequence_alignment	25
protein_function	24
software	23
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comparative_modeling	19
model_assessment	19
statistical_potentials	19
biology	18
structural_genomics	18
databases	17
ribosome	16
nmr	16
disease	16
protein_domains	15
ligand	15
protein_folding	15
bioengineering	14
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protein_fragments	14
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structure_alignment	11
genes	11
prediction	11
dna	10
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model_evaluation	8
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experimental	7
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fold	1
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marcius's folding [41 articles] Export

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