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marcius's protein_function [24 articles]

Recent papers added to marcius's library classified by the tag protein_function. You can also see everyone's protein_function.
  • Bayesian search of functionally divergent protein subgroups and their function specific residues
    Bioinformatics, Vol. 22, No. 20. (15 October 2006), pp. 2466-2474.
    by Marttinen, Pekka, Corander, Jukka, Toronen, Petri, Holm, Liisa
    posted to algorithms bioinformatics protein_function by marcius on 2006-10-20 13:21:03 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Protein Molecular Function Prediction by Bayesian Phylogenomics.
    PLoS Comput Biol, Vol. 1, No. 5. (7 October 2005)
    by Barbara E E Engelhardt, Michael I I Jordan, Kathryn E E Muratore, Steven E E Brenner
    posted to bioinformatics prediction protein_function by marcius on 2006-09-07 17:43:33 as ** along with 7 people and 4 groups kentsis ana eoghanharr Einat dlr sriram_s bootsy structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Assigning new GO annotations to protein data bank sequences by combining structure and sequence homology.
    Proteins, Vol. 58, No. 4. (1 March 2005), pp. 855-865.
    by JV Ponomarenko, PE Bourne, IN Shindyalov
    posted to bioinformatics evolution protein_function protein_structure by marcius on 2006-09-07 17:24:49 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Introduction to informatics approaches in structural genomics: modeling and representation of function from macromolecular structure.
    Pac Symp Biocomput (2005), pp. 319-321.
    by PC Babbitt, PE Bourne, SD Mooney
    posted to protein_function structural_genomics by marcius on 2006-09-07 17:24:03 as ** along with 1 person and 2 groups penka BioinfoCIPF SGU-CIPF
  • Functional Coverage of the Human Genome by Existing Structures, Structural Genomics Targets, and Homology Models.
    PLoS Comput Biol, Vol. 1, No. 3. (19 August 2005)
    by Lei Xie, Philip E E Bourne
    posted to protein_function structural_genomics by marcius on 2006-09-07 17:23:24 as ** along with 2 people and 3 groups bicko caporaso biomedical-nlp BioinfoCIPF SGU-CIPF
  • Probabilistic annotation of protein sequences based on functional classifications.
    BMC Bioinformatics, Vol. 6 (2005)
    by ED Levy, CA Ouzounis, WR Gilks, B Audit
    posted to algorithms bioinformatics protein_function statistics by marcius on 2006-09-07 17:17:23 as ** along with 1 person and 2 groups sgoetz BioinfoCIPF SGU-CIPF
  • Revisiting the prediction of protein function at CASP6
    FEBS Journal, Vol. 273, No. 13. (July 2006), pp. 2977-2983.
    by Pellegrini-Calace, Marialuisa, Soro, Simonetta, Tramontano, Anna
    posted to casp protein_function by marcius on 2006-08-31 17:02:04 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • A comparative study of machine-learning methods to predict the effects of single nucleotide polymorphisms on protein function.
    Bioinformatics, Vol. 19, No. 17. (22 November 2003), pp. 2199-2209.
    by VG Krishnan, DR Westhead
    posted to bioinformatics protein_function snp by marcius on 2006-04-30 01:11:59 as ** along with 5 people and 3 groups chrn eweaver caporaso rlhsiao rsantana biomedical-nlp BioinfoCIPF SGU-CIPF
  • Designed divergent evolution of enzyme function
    Nature (22 February 2006)
    by Yasuo Yoshikuni, Thomas E Ferrin, Jay D Keasling
    posted to bioinformatics evolution protein_function by marcius on 2006-04-20 21:51:55 as ** along with 3 people and 2 groups lingchong tny dbikard BioinfoCIPF SGU-CIPF
  • Automated discovery of 3D motifs for protein function annotation
    Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 723-730.
    by Benjamin J Polacco, Patricia C Babbitt
    posted to bioinformatics protein_function by marcius on 2006-04-04 00:31:57 as ** along with 2 people and 2 groups eweaver rabio BioinfoCIPF SGU-CIPF
  • PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics.
    BMC Bioinformatics, Vol. 7, No. 1. (6 February 2006)
    by Marcin von Grotthuss, Dariusz Plewczynski, Krzysztof Ginalski, Leszek Rychlewski, Eugene I Shakhnovich
    posted to bioinformatics databases protein_function protein_structure by marcius on 2006-02-27 20:16:54 as ** along with 2 people and 3 groups sim82 caporaso biomedical-nlp BioinfoCIPF SGU-CIPF
  • Protein function prediction via graph kernels.
    Bioinformatics, Vol. 21, No. suppl_1. (1 June 2005)
    by Karsten MM Borgwardt, Cheng, Stefan Schönauer, Sv NV Vishwanathan, Alex JJ Smola, Hans-Peter P Kriegel
    posted to bioinformatics classification clustering protein_function by marcius on 2006-02-17 20:36:39 as ** along with 7 people and 4 groups tmmurali okarsligil vavi lfriedl eweaver kt wnpx kdl Bioinformatics BioinfoCIPF SGU-CIPF
  • PRODISTIN Web Site: a tool for the functional classification of proteins from interaction networks
    Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 248-250.
    by Anais Baudot, David Martin, Alain Guenoche, Bernard Jacq, Christine Brun
    posted to bioinformatics genome protein_function protein_interactions by marcius on 2006-02-02 05:50:04 as ** along with 2 people and 2 groups eweaver maralena BioinfoCIPF SGU-CIPF
  • Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information.
    Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 2988-2993.
    by F Al-Shahrour, R Díaz-Uriarte, J Dopazo
    posted to bioinformatics classification protein_function by marcius on 2006-01-17 19:11:48 as ** along with 4 people and 2 groups eweaver rdiaz ealloza Garamonfok BioinfoCIPF SGU-CIPF
  • Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery.
    Drug Discov Today, Vol. 10, No. 21. (1 November 2005), pp. 1475-1482.
    by Y Ofran, M Punta, R Schneider, B Rost
    posted to bioinformatics protein_function review by marcius on 2006-01-13 23:55:53 as ** along with 3 people and 2 groups jwortman kuhn cjeans BioinfoCIPF SGU-CIPF
  • Inferring functional information from domain co-evolution
    Bioinformatics, Vol. 22, No. 1. (1 January 2006), pp. 40-49.
    by Yohan Kim, Mehmet Koyuturk, Umut Topkara, Ananth Grama, Shankar Subramaniam
    posted to bioinformatics evolution protein_function by marcius on 2006-01-12 19:07:33 as ** along with 1 person and 2 groups eweaver BioinfoCIPF SGU-CIPF
  • Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design.
    Nucleic Acids Res, Vol. 33, No. 18. (2005), pp. 5861-5867.
    by Gong Cheng, Bin Qian, Ram Samudrala, David Baker
    posted to biophysics evolution protein_function protein_structure by marcius on 2005-11-02 09:14:59 as ** along with 6 people and 3 groups bicko Einat alexg nickolay sriram_s ladab structural_bioinformatics BioinfoCIPF SGU-CIPF
  • Probing the beta2 adrenoceptor binding site with catechol reveals differences in binding and activation by agonists and partial agonists.
    J Biol Chem, Vol. 280, No. 23. (10 June 2005), pp. 22165-22171.
    by G Swaminath, X Deupi, TW Lee, W Zhu, FS Thian, TS Kobilka, B Kobilka
    posted to biology biophysics protein_function by marcius on 2005-10-22 21:55:55 as * along with 1 person and 3 groups xdeupi BioinfoCIPF LabCompMed SGU-CIPF
  • Automatic annotation of protein function
    Current Opinion in Structural Biology, Vol. 15, No. 3. (June 2005), pp. 267-274.
    by Alfonso Valencia
    posted to bioinformatics protein_function review by marcius on 2005-10-22 09:02:45 as *** along with 5 people and 2 groups tjimenez dimka kuhn eweaver bootsy BioinfoCIPF SGU-CIPF
  • The prediction of protein function at CASP6.
    Proteins (26 September 2005)
    by Simonetta Soro, Anna Tramontano
    posted to casp protein_function by marcius on 2005-10-22 08:55:56 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Systemic determinants of gene evolution and function
    Molecular Systems Biology, Vol. 1, No. 1. (13 September 2005), pp. msb4100029-E1-msb4100029-E2.
    by Eugene V Koonin
    posted to evolution protein_function systems_biology by marcius on 2005-10-22 04:22:41 as **** along with 4 people and 3 groups ataheri Schmidtc bluto niallhaslam plant-development BioinfoCIPF SGU-CIPF
  • The C-type lectin fold as an evolutionary solution for massive sequence variation
    Nature Structural & Molecular Biology, Vol. 12, No. 10. (18 September 2005), pp. 886-892.
    by Stephen A Mcmahon, Jason L Miller, Jeffrey A Lawton, Donald E Kerkow, Asher Hodes, Marc A Marti-Renom, Sergei Doulatov, Eswar Narayanan, Andrej Sali, Jeff F Miller, Partho Ghosh
    posted to computational_biology evolution immunology protein_function protein_structure by marcius on 2005-10-21 09:26:57 as read along with 1 person and 4 groups ana structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Why highly expressed proteins evolve slowly.
    Proc Natl Acad Sci U S A (21 September 2005)
    by D Allan A Drummond, Jesse D D Bloom, Christoph Adami, Claus O O Wilke, Frances H H Arnold
    posted to evolution pleiotropy protein_function by marcius on 2005-10-21 02:44:11 as **** along with 14 people and 5 groups wilbur balicea RamuAnandakrishnan rklancer stevanspringer bjorns imouthesmp aprasad dayjm Einat xwbcn penka balabu malcook structural_bioinformatics Nie FAB-lab BioinfoCIPF SGU-CIPF
  • Moonlighting proteins
    Trends in Biochemical Sciences, Vol. 24, No. 1. (1 January 1999), pp. 8-11.
    by Constance J Jeffery
    posted to pleiotropy protein_function by marcius on 2005-10-21 02:42:03 as *** along with 3 people and 3 groups stevanspringer tny benlin FAB-lab BioinfoCIPF SGU-CIPF
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