marcius's sequence_alignment [25 articles] Export

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	The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. [My Copy] Nucleic Acids Res (25 May 2007) by Sebastien Moretti, Fabrice Armougom, Iain M M. Wallace, Desmond G G. Higgins, Cornelius V V. Jongeneel, Cedric Notredame posted to algorithms alignment sequence sequence_alignment by marcius on 2007-06-04 10:12:59 as along with 2 people and 2 groups sebastien_vigneau marti BioinfoCIPF SGU-CIPF
	Sequence comparison by sequence harmony identifies subtype-specific functional sites. [My Copy] Nucleic acids research, Vol. 34, No. 22. (December 2006), pp. 6540-6548. by W. Pirovano, K. A. Feenstra, J. Heringa posted to bioinformatics classification function protein sequence_alignment by marcius on 2007-01-03 13:02:03 as along with 4 people and 2 groups mgomes jameswasmuth sriram_s marti BioinfoCIPF SGU-CIPF
	Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection [My Copy] Nucleic Acids Research, Vol. 34, No. 17. (October 2006), pp. e112-e112. by D. Chivian, D. Baker posted to algorithms bioinformatics comparative_modeling sequence_alignment by marcius on 2006-10-25 21:43:08 as along with 1 person and 2 groups j3xucite BioinfoCIPF SGU-CIPF
	CMfinder--a covariance model based RNA motif finding algorithm [My Copy] Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 445-452. by Zizhen Yao, Zasha Weinberg, Walter L. Ruzzo posted to bioinformatics rna sequence_alignment by marcius on 2006-02-15 23:57:52 as along with 4 people and 2 groups mpizbioinfo timhubbard wowalz ilh BioinfoCIPF SGU-CIPF
	Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions [My Copy] Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 413-422. by Yao-Ming Huang, Christopher Bystroff posted to bioinformatics protein_fragments sequence_alignment by marcius on 2006-02-15 23:55:45 as along with 1 person and 2 groups newton1234 BioinfoCIPF SGU-CIPF
	Combining evolutionary and structural information for local protein structure prediction. [My Copy] Proteins, Vol. 56, No. 4. (1 September 2004), pp. 782-794. by J. Pei, N. V. Grishin posted to bioinformatics biophysics sequence_alignment statistical_potentials structure_prediction by marcius on 2006-01-20 23:19:35 as along with 2 groups BioinfoCIPF SGU-CIPF
	Five hierarchical levels of sequence-structure correlation in proteins. [My Copy] Applied bioinformatics. , Vol. 3, No. 2-3. (2004), pp. 97-104. by C. Bystroff, Y. Shao, X. Yuan posted to bioinformatics biophysics sequence-structure sequence_alignment statistical_potentials structure_prediction by marcius on 2006-01-20 23:13:49 as along with 3 people and 2 groups flbarroso eweaver rabio BioinfoCIPF SGU-CIPF
	Evolutionarily Conserved Pathways of Energetic Connectivity in Protein Families [My Copy] Science, Vol. 286, No. 5438. (8 October 1999), pp. 295-299. by Steve W. Lockless, Rama Ranganathan posted to bioinformatics biophysics sequence_alignment statistical_potentials structure_prediction by marcius on 2006-01-20 23:11:47 as along with 18 people and 6 groups krapnik mgomes qluo stevanspringer Einat eckart_bindewald analogAI dgront caporaso sriram_s choonpeng Haggan rabio mottonen zambujo mingzhi bethbromley ca3295 Marcotte_Lab structural_bioinformatics FAB-lab biomedical-nlp BioinfoCIPF SGU-CIPF
	Evolutionarily conserved networks of residues mediate allosteric communication in proteins [My Copy] Nature Structural & Molecular Biology, Vol. 10, No. 1. (16 December 2002), pp. 59-69. by Gurol M. Suel, Steve W. Lockless, Mark A. Wall, Rama Ranganathan posted to bioinformatics biophysics sequence_alignment statistical_potentials structure_prediction by marcius on 2006-01-20 23:09:56 as along with 20 people and 3 groups mgomes qluo arjun_citeulike RebeccaHamer ynaito lna dimka eckart_bindewald gbart analogAI nirfriedman dgront caporaso choonpeng efge carlescorbi mingzhi yalexeev weisblum ca3295 biomedical-nlp BioinfoCIPF SGU-CIPF
	Local complexity of amino acid interactions in a protein core. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 1. (6 January 2004), pp. 111-116. by R. K. Jain, R. Ranganathan posted to bioinformatics biophysics sequence_alignment statistical_potentials structure_prediction by marcius on 2006-01-20 23:08:01 as along with 5 people and 4 groups ana barry lna gbart choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Natural-like function in artificial WW domains [My Copy] Nature, Vol. 437, No. 7058., pp. 579-583. by William P. Russ, Drew M. Lowery, Prashant Mishra, Michael B. Yaffe, Rama Ranganathan posted to bioinformatics biophysics sequence_alignment statistical_potentials structure_prediction by marcius on 2006-01-20 23:06:18 as along with 6 people and 5 groups ana barry balajis caporaso bethbromley ca3295 structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
	An information theoretic approach to macromolecular modeling: I. Sequence alignments. [My Copy] Biophys J, Vol. 89, No. 5. (November 2005), pp. 2998-3007. by T. Aynechi, I. D. Kuntz posted to bioinformatics biophysics model_assessment sequence_alignment by marcius on 2006-01-20 22:56:59 as along with 1 person and 2 groups nickolay BioinfoCIPF SGU-CIPF
	Automatic assessment of alignment quality [My Copy] Nucleic Acids Research, Vol. 33, No. 22. (2005), pp. 7120-7128. by Timo Lassmann, Erik L. Sonnhammer posted to bioinformatics model_assessment sequence_alignment by marcius on 2006-01-12 19:11:40 as along with 2 people and 2 groups BioNica treangen BioinfoCIPF SGU-CIPF
	RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space [My Copy] Nucl. Acids Res., Vol. 31, No. 16. (15 August 2003), pp. 4755-4761. by Carlos M. Duarte, Leven M. Wadley, Anna M. Pyle posted to rna secondary_structure sequence_alignment by marcius on 2005-12-28 11:43:12 as along with 4 people and 3 groups jwm j3xucite condon emidio_capriotti beta BioinfoCIPF SGU-CIPF
	Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments. [My Copy] Nucleic Acids Res, Vol. 33, No. 8. (2005), pp. 2395-2409. by A. Lescoute, N. B. Leontis, C. Massire, E. Westhof posted to rna secondary_structure sequence_alignment structure by marcius on 2005-12-22 22:54:59 as along with 3 people and 2 groups jarasch debatebob reyez BioinfoCIPF SGU-CIPF
	Cofolga: a genetic algorithm for finding the common folding of two RNAs [My Copy] Comput. Biol. Chem., Vol. 29, No. 2. (April 2005), pp. 111-119. by Akito Taneda posted to algorithms bioinformatics rna sequence_alignment by marcius on 2005-10-23 19:17:01 as along with 2 people and 2 groups parnell eckart_bindewald BioinfoCIPF SGU-CIPF
	Predicting RNA structure using mutual information. [My Copy] Appl Bioinformatics, Vol. 4, No. 1. (2005), pp. 53-59. by E. Freyhult, V. Moulton, P. Gardner posted to algorithms bioinformatics rna sequence_alignment by marcius on 2005-10-23 19:15:56 as along with 4 people and 2 groups evaf eckart_bindewald eweaver arcticrasta BioinfoCIPF SGU-CIPF
	MicroRNA identification based on sequence and structure alignment. [My Copy] Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3610-3614. by X. Wang, J. Zhang, F. Li, et al.J. Gu, T. He, X. Zhang, Y. Li posted to algorithms bioinformatics rna sequence_alignment structure_alignment by marcius on 2005-10-23 03:17:36 as along with 2 people and 2 groups eckart_bindewald bioinfo BioinfoCIPF SGU-CIPF
	MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3352-3359. by S. Siebert, R. Backofen posted to algorithms bioinformatics rna sequence_alignment by marcius on 2005-10-23 03:10:32 as along with 2 people and 2 groups arcticrasta ilh BioinfoCIPF SGU-CIPF
	A benchmark of multiple sequence alignment programs upon structural RNAs. [My Copy] Nucleic Acids Res, Vol. 33, No. 8. (2005), pp. 2433-2439. by P. P. Gardner, A. Wilm, S. Washietl posted to bioinformatics rna sequence_alignment by marcius on 2005-10-23 03:09:57 as along with 2 groups BioinfoCIPF SGU-CIPF
	Evolutionary plasticity of protein families: Coupling between sequence and structure variation [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 3. (23 September 2005), pp. 535-544. by Anna R. Panchenko, Yuri I. Wolf, Larisa A. Panchenko, Thomas Madej posted to bioinformatics biophysics evolution sequence_alignment by marcius on 2005-10-23 02:58:31 as along with 4 people and 3 groups alexg gbart sobolevnrm insectopalo BioinfoCIPF SGU-CIPF baker-group
	Grouping of amino acid types and extraction of amino acid properties from multiple sequence alignments using variance maximization [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 3. (23 September 2005), pp. 523-534. by James O. Wrabl, Nick V. Grishin posted to aminoacid_alphabets bioinformatics sequence_alignment by marcius on 2005-10-23 02:54:50 as along with 2 people and 2 groups Haggan mloewer BioinfoCIPF SGU-CIPF
	Protein structure prediction in CASP6 using CHIMERA and FAMS. [My Copy] Proteins (26 September 2005) by Mayuko Takeda-Shitaka, Genki Terashi, Daisuke Takaya, Kazuhiko Kanou, Mitsuo Iwadate, Hideaki Umeyama posted to bioinformatics cafasp casp sequence_alignment structure_prediction by marcius on 2005-10-22 09:11:43 as along with 2 groups BioinfoCIPF SGU-CIPF
	SAM-T04: what's new in protein-structure prediction for CASP6. [My Copy] Proteins (26 September 2005) by Kevin Karplus, Sol Katzman, George Shackleford, et al.Martina Koeva, Jenny Draper, Bret Barnes, Marcia Soriano, Richard Hughey posted to cafasp casp sequence_alignment structure_prediction by marcius on 2005-10-22 09:10:38 as along with 2 groups BioinfoCIPF SGU-CIPF
	Protein structure comparison by alignment of distance matrices [My Copy] Journal of Molecular Biology, No. 223. (1993), pp. 123-128. by L. Holm, C. Sander posted to comparative_modeling protein_structure sequence_alignment by marcius on 2005-10-22 03:09:40 as along with 2 groups BioinfoCIPF SGU-CIPF

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rna	213
bioinformatics	196
review	127
biophysics	90
protein_structure	86
structure	86
evolution	86
structure_prediction	64
algorithms	56
computational_biology	53
secondary_structure	53
protein	43
folding	41
classification	38
ncrna	35
casp	35
drug	32
docking	32
protein_interactions	31
genome	30
function	29
microrna	27
cafasp	26
sequence_alignment	25
protein_function	24
software	23
views	22
servers	22
comparative_modeling	19
model_assessment	19
statistical_potentials	19
biology	18
structural_genomics	18
databases	17
ribosome	16
nmr	16
disease	16
protein_domains	15
ligand	15
protein_folding	15
bioengineering	14
clustering	14
protein_fragments	14
ab-initio	12
structure_alignment	11
genes	11
prediction	11
dna	10
statistics	9
snp	9
alignment	9
model_evaluation	8
membrane_protein	7
experimental	7
gene_expression	6
systems_biology	6
microarray	6
phylogeny	6
virus	5
mechano_receptors	5
foce_field	5
sequence	5
protein_threading	5
motif	5
molecular_dynamics	5
text_mining	4
ribozyme	4
discovery	4
rotamers	4
sequence-structure	4
protein_complexes	3
cancer	3
comparative_docking	3
server	3
news	3
human	3
interaction	3
meeting	3
immunology	2
programming	2
hypotesis	2
allosteric	2
proteomics	2
editorial	2
pleiotropy	2
pdb	2
hts	2
trypsin	1
ontology	1
loop_modeling	1
proteases	1
metabolomics	1
opensourcebiology	1
nucleosome	1
side_chains	1
protein_disorder	1
protein_design	1
nanotechnology	1
membrane	1
stability	1
disulfide	1
position	1
web20	1
malaria	1
congress	1
synthetic_biology	1
fold	1
glyco	1
dynamics	1
machine_learning	1
mysql	1
aminoacid_alphabets	1
metagenomics	1
php	1
molecular_mimicry	1
stem_cells	1
consensus	1
plant	1

marcius's sequence_alignment [25 articles] Export

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